SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921001 8y15:B (2.17) BS02 CHL N/A GO:0009765 ... P12333 39346626
    921002 8y15:B (2.17) BS03 CLA N/A GO:0009765 ... P12333 39346626
    921003 8y15:B (2.17) BS04 CLA N/A GO:0009765 ... P12333 39346626
    921004 8y15:B (2.17) BS05 CLA N/A GO:0009765 ... P12333 39346626
    921005 8y15:B (2.17) BS06 CHL N/A GO:0009765 ... P12333 39346626
    921006 8y15:B (2.17) BS07 CHL N/A GO:0009765 ... P12333 39346626
    921007 8y15:B (2.17) BS08 CHL N/A GO:0009765 ... P12333 39346626
    921008 8y15:B (2.17) BS09 CHL N/A GO:0009765 ... P12333 39346626
    921009 8y15:B (2.17) BS10 CHL N/A GO:0009765 ... P12333 39346626
    921010 8y15:B (2.17) BS11 CLA N/A GO:0009765 ... P12333 39346626
    921011 8y15:B (2.17) BS12 CLA N/A GO:0009765 ... P12333 39346626
    921012 8y15:B (2.17) BS13 CLA N/A GO:0009765 ... P12333 39346626
    921013 8y15:B (2.17) BS14 CLA N/A GO:0009765 ... P12333 39346626
    921014 8y15:B (2.17) BS15 CLA N/A GO:0009765 ... P12333 39346626
    921015 8y15:B (2.17) BS16 A1LXP N/A GO:0009765 ... P12333 39346626
    921016 8y15:B (2.17) BS17 A1LXP N/A GO:0009765 ... P12333 39346626
    921017 8y15:C (2.17) BS01 CHL N/A GO:0009765 ... P12333 39346626
    921018 8y15:C (2.17) BS02 CHL N/A GO:0009765 ... P12333 39346626
    921019 8y15:C (2.17) BS03 CLA N/A GO:0009765 ... P12333 39346626
    921020 8y15:C (2.17) BS04 CLA N/A GO:0009765 ... P12333 39346626
    921021 8y15:C (2.17) BS05 CLA N/A GO:0009765 ... P12333 39346626
    921022 8y15:C (2.17) BS06 CHL N/A GO:0009765 ... P12333 39346626
    921023 8y15:C (2.17) BS07 CHL N/A GO:0009765 ... P12333 39346626
    921024 8y15:C (2.17) BS08 CHL N/A GO:0009765 ... P12333 39346626
    921025 8y15:C (2.17) BS09 CHL N/A GO:0009765 ... P12333 39346626
    921026 8y15:C (2.17) BS10 CHL N/A GO:0009765 ... P12333 39346626
    921027 8y15:C (2.17) BS11 CLA N/A GO:0009765 ... P12333 39346626
    921028 8y15:C (2.17) BS12 CLA N/A GO:0009765 ... P12333 39346626
    921029 8y15:C (2.17) BS13 CLA N/A GO:0009765 ... P12333 39346626
    921030 8y15:C (2.17) BS14 CLA N/A GO:0009765 ... P12333 39346626
    921031 8y15:C (2.17) BS15 CLA N/A GO:0009765 ... P12333 39346626
    921032 8y15:C (2.17) BS16 A1LXP N/A GO:0009765 ... P12333 39346626
    921033 8y15:C (2.17) BS17 A1LXP N/A GO:0009765 ... P12333 39346626
    921034 8y16:A (2.98) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    921035 8y16:E (2.98) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    921036 8y16:F (2.98) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    921037 8y17:A (2.8) BS01 MN N/A GO:0004784 ... P0A0J3 N/A
    921038 8y17:B (2.8) BS01 MN N/A GO:0004784 ... P0A0J3 N/A
    921039 8y17:C (2.8) BS01 MN N/A GO:0004784 ... P0A0J3 N/A
    921040 8y17:D (2.8) BS01 MN N/A GO:0004784 ... P0A0J3 N/A
    921041 8y18:A (3.04) BS01 ZN N/A GO:0006508 ... Q9BYF1 39013463
    921042 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0004794 ... Q9I6G0 38417345
    921043 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0004794 ... Q9I6G0 38417345
    921044 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0004794 ... Q9I6G0 38417345
    921045 8y1k:A (3.1) BS01 dna N/A N/A A0A1J0LSN9 39820821
    921046 8y1k:A (3.1) BS02 ANP N/A N/A A0A1J0LSN9 39820821
    921047 8y1k:B (3.1) BS01 dna N/A N/A A0A1J0LSN9 39820821
    921048 8y1k:B (3.1) BS02 ANP N/A N/A A0A1J0LSN9 39820821
    921049 8y1k:E (3.1) BS01 dna N/A N/A A0A1J0LSN9 39820821
    921050 8y1k:F (3.1) BS01 dna N/A N/A A0A1J0LSN9 39820821
    921051 8y1k:F (3.1) BS02 ANP N/A N/A A0A1J0LSN9 39820821
    921052 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921053 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921054 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921055 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921056 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921057 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921058 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921059 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921060 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921061 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921062 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921063 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921064 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0004553 ... P07528 38565938
    921065 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921066 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921067 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921068 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921069 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0004553 ... P07528 38565938
    921070 8y1p:A (3.45) BS01 17F N/A GO:0000139 ... Q8IZY2 N/A
    921071 8y1p:A (3.45) BS02 17F N/A GO:0000139 ... Q8IZY2 N/A
    921072 8y1q:A (2.42) BS01 DU N/A GO:0000287 ... O66592 39440877
    921073 8y1q:B (2.42) BS01 DU N/A GO:0000287 ... O66592 39440877
    921074 8y1q:C (2.42) BS01 DU N/A GO:0000287 ... O66592 39440877
    921075 8y1t:A (2.4) BS01 G3P N/A GO:0004370 ... Q9NJP9 N/A
    921076 8y1t:A (2.4) BS02 ADP N/A GO:0004370 ... Q9NJP9 N/A
    921077 8y1t:B (2.4) BS01 ADP N/A GO:0004370 ... Q9NJP9 N/A
    921078 8y1u:A (2.41) BS01 peptide N/A GO:0000792 ... Q9H672 39039081
    921079 8y1w:A (1.36) BS01 UMP N/A GO:0006226 ... K7PBY4 39440877
    921080 8y1x:A (3.68) BS01 ASP N/A GO:0005886 ... Q8L3K8 N/A
    921081 8y1x:B (3.68) BS01 ASP N/A GO:0005886 ... Q8L3K8 N/A
    921082 8y1y:A (2.01) BS01 peptide N/A GO:0042981 ... Q07820 39901037
    921083 8y1z:A (1.914) BS01 peptide N/A GO:0042981 ... Q07820 39901037
    921084 8y20:A (2.23) BS01 GLC N/A GO:0008643 ... Q07820 39901037
    921085 8y20:A (2.23) BS02 GLC N/A GO:0008643 ... Q07820 39901037
    921086 8y20:A (2.23) BS03 A1LXV N/A GO:0008643 ... Q07820 39901037
    921087 8y21:D (1.691) BS01 COA N/A GO:0005515 ... P9WFK1 N/A
    921088 8y21:F (1.691) BS01 COA N/A N/A I6WYY7 N/A
    921089 8y22:A (2.792) BS01 A1LW9 N/A GO:0004672 ... P11362 38870833
    921090 8y22:B (2.792) BS01 A1LW9 N/A GO:0004672 ... P11362 38870833
    921091 8y23:A (1.48) BS01 6FX N/A GO:0009374 ... P22629 N/A
    921092 8y23:B (1.48) BS01 6FX N/A GO:0009374 ... P22629 N/A
    921093 8y23:C (1.48) BS01 6FX N/A GO:0009374 ... P22629 N/A
    921094 8y23:D (1.48) BS01 6FX N/A GO:0009374 ... P22629 N/A
    921095 8y26:B (1.23) BS01 A1LXQ N/A GO:0009374 ... P22629 N/A
    921096 8y26:D (1.23) BS01 A1LXQ N/A GO:0009374 ... P22629 N/A
    921097 8y27:B (1.45) BS01 A1LXQ N/A GO:0009374 ... P22629 N/A
    921098 8y27:C (1.45) BS01 A1LXQ N/A GO:0009374 ... P22629 N/A
    921099 8y27:D (1.45) BS01 A1LXQ N/A GO:0009374 ... P22629 N/A
    921100 8y29:A (1.42) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921101 8y29:B (1.42) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921102 8y29:C (1.42) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921103 8y29:D (1.42) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921104 8y2a:A (1.34) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921105 8y2a:B (1.34) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921106 8y2a:C (1.34) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921107 8y2a:D (1.34) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921108 8y2b:A (1.5) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921109 8y2b:C (1.5) BS01 MT6 N/A GO:0009374 ... P22629 N/A
    921110 8y2d:A (2.8) BS01 LDP N/A GO:0016020 ... Q01959 39112701
    921111 8y2e:A (3.03) BS01 CXQ N/A GO:0001504 ... Q01959 39112701
    921112 8y2f:A (2.97) BS01 A1D5S N/A GO:0001504 ... Q01959 39112701
    921113 8y2g:A (2.83) BS01 A1D5U N/A GO:0001504 ... Q01959 39112701
    921114 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921115 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921116 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921117 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921118 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921119 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921120 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921121 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921122 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921123 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921124 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921125 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11
    GO:0003824 ... P54887 38740943
    921126 8y2i:A (2.92) BS01 dna N/A N/A N/A 39737904
    921127 8y2i:A (2.92) BS02 dna N/A N/A N/A 39737904
    921128 8y2i:A (2.92) BS03 rna N/A N/A N/A 39737904
    921129 8y2l:A (3.95) BS01 MN N/A GO:0016757 ... P18177 N/A
    921130 8y2l:A (3.95) BS02 UDP N/A GO:0016757 ... P18177 N/A
    921131 8y2l:B (3.95) BS01 MN N/A GO:0016757 ... P18177 N/A
    921132 8y2l:B (3.95) BS02 UDP N/A GO:0016757 ... P18177 N/A
    921133 8y2l:C (3.95) BS01 MN N/A GO:0016757 ... P18177 N/A
    921134 8y2l:C (3.95) BS02 UDP N/A GO:0016757 ... P18177 N/A
    921135 8y2m:A (3.07) BS01 A1D5V N/A GO:0005515 ... P28496 38964337
    921136 8y2m:A (3.07) BS02 7PO N/A GO:0005515 ... P28496 38964337
    921137 8y2m:C (3.07) BS01 A1D5V N/A GO:0005515 ... P28496 38964337
    921138 8y2m:C (3.07) BS02 7PO N/A GO:0005515 ... P28496 38964337
    921139 8y2o:A (2.66) BS01 rna N/A GO:0002128 ... Q6YHU6 40483304
    921140 8y2o:B (2.66) BS01 rna N/A GO:0001510 ... Q9UET6 40483304
    921141 8y2o:B (2.66) BS02 SAH N/A GO:0001510 ... Q9UET6 40483304
    921142 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0016491 ... P20586 N/A
    921143 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0016491 ... P20586 N/A
    921144 8y30:A (2.8) BS01 MG N/A GO:0003676 ... Q2FXT9 N/A
    921145 8y30:A (2.8) BS02 MG N/A GO:0003676 ... Q2FXT9 N/A
    921146 8y30:B (2.8) BS01 MG N/A GO:0003676 ... Q2FXT9 N/A
    921147 8y30:B (2.8) BS02 MG N/A GO:0003676 ... Q2FXT9 N/A
    921148 8y30:C (2.8) BS01 MG N/A GO:0003676 ... Q2FXT9 N/A
    921149 8y30:C (2.8) BS02 MG N/A GO:0003676 ... Q2FXT9 N/A
    921150 8y33:A (2.9) BS01 V8U N/A GO:0015979 ... N/A 38552148
    921151 8y36:1 (2.65) BS01 rna N/A GO:0003735 ... Q2FYU6 38992047
    921152 8y36:2 (2.65) BS01 rna N/A GO:0003735 ... Q2FUQ0 38992047
    921153 8y36:3 (2.65) BS01 rna N/A GO:0003735 ... Q2FXQ0 38992047
    921154 8y36:4 (2.65) BS01 rna N/A GO:0003735 ... Q2FW29 38992047
    921155 8y36:C (2.65) BS01 rna N/A GO:0002181 ... P60433 38992047
    921156 8y36:D (2.65) BS01 rna N/A GO:0003735 ... Q2FW06 38992047
    921157 8y36:E (2.65) BS01 rna N/A GO:0003735 ... Q2FW07 38992047
    921158 8y36:F (2.65) BS01 rna N/A GO:0000049 ... Q2FW18 38992047
    921159 8y36:F (2.65) BS02 rna N/A GO:0000049 ... Q2FW18 38992047
    921160 8y36:G (2.65) BS01 rna N/A GO:0002181 ... Q2FW21 38992047
    921161 8y36:H (2.65) BS01 rna N/A GO:0003729 ... Q2FW38 38992047
    921162 8y36:I (2.65) BS01 rna N/A GO:0003735 ... Q2FW16 38992047
    921163 8y36:J (2.65) BS01 rna N/A GO:0003735 ... P0A0F8 38992047
    921164 8y36:K (2.65) BS01 rna N/A GO:0003735 ... Q2FW13 38992047
    921165 8y36:K (2.65) BS02 rna N/A GO:0003735 ... Q2FW13 38992047
    921166 8y36:L (2.65) BS01 rna N/A GO:0003735 ... Q2FW33 38992047
    921167 8y36:M (2.65) BS01 rna N/A GO:0003735 ... Q2FW22 38992047
    921168 8y36:M (2.65) BS02 rna N/A GO:0003735 ... Q2FW22 38992047
    921169 8y36:N (2.65) BS01 rna N/A GO:0003735 ... Q2FZ42 38992047
    921170 8y36:O (2.65) BS01 rna N/A GO:0000027 ... Q2FXQ1 38992047
    921171 8y36:P (2.65) BS01 rna N/A GO:0003723 ... Q2FXS8 38992047
    921172 8y36:Q (2.65) BS01 rna N/A GO:0003735 ... Q2FW11 38992047
    921173 8y36:R (2.65) BS01 rna N/A GO:0003735 ... Q2FW08 38992047
    921174 8y36:S (2.65) BS01 rna N/A GO:0003723 ... Q2FW17 38992047
    921175 8y36:T (2.65) BS01 rna N/A GO:0003735 ... Q7A1S4 38992047
    921176 8y36:U (2.65) BS01 rna N/A GO:0003735 ... Q2FXT0 38992047
    921177 8y36:U (2.65) BS02 rna N/A GO:0003735 ... Q2FXT0 38992047
    921178 8y36:V (2.65) BS01 rna N/A GO:0003735 ... Q2FZ60 38992047
    921179 8y36:W (2.65) BS01 rna N/A GO:0003735 ... Q2FW14 38992047
    921180 8y36:X (2.65) BS01 rna N/A GO:0003735 ... P0A0G2 38992047
    921181 8y36:X (2.65) BS02 rna N/A GO:0003735 ... P0A0G2 38992047
    921182 8y36:Y (2.65) BS01 rna N/A GO:0003735 ... Q2FWD8 38992047
    921183 8y36:Z (2.65) BS01 rna N/A GO:0003735 ... P66211 38992047
    921184 8y37:1 (2.53) BS01 rna N/A GO:0003735 ... Q2FYU6 38992047
    921185 8y37:2 (2.53) BS01 rna N/A GO:0003735 ... Q2FUQ0 38992047
    921186 8y37:3 (2.53) BS01 rna N/A GO:0003735 ... Q2FXQ0 38992047
    921187 8y37:4 (2.53) BS01 rna N/A GO:0003735 ... Q2FW29 38992047
    921188 8y37:C (2.53) BS01 rna N/A GO:0002181 ... P60430 38992047
    921189 8y37:D (2.53) BS01 rna N/A GO:0003735 ... Q2FW06 38992047
    921190 8y37:E (2.53) BS01 rna N/A GO:0003735 ... Q2FW07 38992047
    921191 8y37:F (2.53) BS01 rna N/A GO:0000049 ... Q2FW18 38992047
    921192 8y37:F (2.53) BS02 rna N/A GO:0000049 ... Q2FW18 38992047
    921193 8y37:G (2.53) BS01 rna N/A GO:0002181 ... Q2FW21 38992047
    921194 8y37:H (2.53) BS01 rna N/A GO:0003729 ... Q2FW38 38992047
    921195 8y37:I (2.53) BS01 rna N/A GO:0003735 ... Q2FW16 38992047
    921196 8y37:J (2.53) BS01 rna N/A GO:0003735 ... P0A0F8 38992047
    921197 8y37:K (2.53) BS01 rna N/A GO:0003735 ... Q2FW13 38992047
    921198 8y37:K (2.53) BS02 rna N/A GO:0003735 ... Q2FW13 38992047
    921199 8y37:L (2.53) BS01 rna N/A GO:0003735 ... Q2FW33 38992047
    921200 8y37:M (2.53) BS01 rna N/A GO:0003735 ... Q2FW22 38992047

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).