SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921001 9b17:D (2.65) BS04 ZIQ N/A GO:0004833 ... P48775 39106326
    921002 9b1d:A (3.3) BS01 dna N/A GO:0000725 ... Q05471 39357520
    921003 9b1d:A (3.3) BS02 dna N/A GO:0000725 ... Q05471 39357520
    921004 9b1d:A (3.3) BS03 AGS N/A GO:0000725 ... Q05471 39357520
    921005 9b1d:C (3.3) BS01 AGS N/A GO:0000785 ... Q12509 39357520
    921006 9b1d:D (3.3) BS01 ZN N/A GO:0000785 ... Q03433 39357520
    921007 9b1d:D (3.3) BS02 ZN N/A GO:0000785 ... Q03433 39357520
    921008 9b1d:E (3.3) BS01 AGS N/A GO:0000492 ... Q03940 39357520
    921009 9b1d:E (3.3) BS02 MG N/A GO:0000492 ... Q03940 39357520
    921010 9b1d:F (3.3) BS01 ADP N/A GO:0000492 ... Q12464 39357520
    921011 9b1d:G (3.3) BS01 MG N/A GO:0000492 ... Q03940 39357520
    921012 9b1d:G (3.3) BS02 AGS N/A GO:0000492 ... Q03940 39357520
    921013 9b1d:H (3.3) BS01 ADP N/A GO:0000492 ... Q12464 39357520
    921014 9b1d:I (3.3) BS01 ADP N/A GO:0000492 ... Q03940 39357520
    921015 9b1d:J (3.3) BS01 ADP N/A GO:0000492 ... Q12464 39357520
    921016 9b1e:A (4.4) BS01 dna N/A GO:0000725 ... Q05471 39357520
    921017 9b1e:A (4.4) BS02 dna N/A GO:0000725 ... Q05471 39357520
    921018 9b1e:A (4.4) BS03 ADP N/A GO:0000725 ... Q05471 39357520
    921019 9b1e:A (4.4) BS04 BEF N/A GO:0000725 ... Q05471 39357520
    921020 9b1e:B (4.4) BS01 dna N/A GO:0000785 ... Q03388 39357520
    921021 9b1e:B (4.4) BS02 dna N/A GO:0000785 ... Q03388 39357520
    921022 9b1e:C (4.4) BS01 ADP N/A GO:0000785 ... Q12509 39357520
    921023 9b1e:C (4.4) BS02 BEF N/A GO:0000785 ... Q12509 39357520
    921024 9b1e:D (4.4) BS01 ZN N/A GO:0000785 ... Q03433 39357520
    921025 9b1e:D (4.4) BS02 ZN N/A GO:0000785 ... Q03433 39357520
    921026 9b1e:E (4.4) BS01 ADP N/A GO:0000492 ... Q03940 39357520
    921027 9b1e:F (4.4) BS01 ADP N/A GO:0000492 ... Q12464 39357520
    921028 9b1e:G (4.4) BS01 ADP N/A GO:0000492 ... Q03940 39357520
    921029 9b1e:H (4.4) BS01 ADP N/A GO:0000492 ... Q12464 39357520
    921030 9b1e:I (4.4) BS01 ADP N/A GO:0000492 ... Q03940 39357520
    921031 9b1e:J (4.4) BS01 ADP N/A GO:0000492 ... Q12464 39357520
    921032 9b1e:K (4.4) BS01 dna N/A GO:0000785 ... P31376 39357520
    921033 9b1e:K (4.4) BS02 dna N/A GO:0000785 ... P31376 39357520
    921034 9b1e:Q (4.4) BS01 dna N/A GO:0000122 ... P04911 39357520
    921035 9b1e:Q (4.4) BS02 dna N/A GO:0000122 ... P04911 39357520
    921036 9b1e:R (4.4) BS01 dna N/A GO:0000122 ... P02293 39357520
    921037 9b1e:R (4.4) BS02 dna N/A GO:0000122 ... P02293 39357520
    921038 9b1e:S (4.4) BS01 dna N/A GO:0000122 ... P04911 39357520
    921039 9b1e:S (4.4) BS02 dna N/A GO:0000122 ... P04911 39357520
    921040 9b1e:T (4.4) BS01 dna N/A GO:0000122 ... P02293 39357520
    921041 9b1e:T (4.4) BS02 dna N/A GO:0000122 ... P02293 39357520
    921042 9b1e:U (4.4) BS01 dna N/A GO:0000785 ... P02299 39357520
    921043 9b1e:U (4.4) BS02 dna N/A GO:0000785 ... P02299 39357520
    921044 9b1e:V (4.4) BS01 dna N/A GO:0000786 ... A0A0B4KFZ9 39357520
    921045 9b1e:V (4.4) BS02 dna N/A GO:0000786 ... A0A0B4KFZ9 39357520
    921046 9b1e:W (4.4) BS01 dna N/A GO:0000785 ... P02299 39357520
    921047 9b1e:W (4.4) BS02 dna N/A GO:0000785 ... P02299 39357520
    921048 9b1e:X (4.4) BS01 dna N/A GO:0000786 ... A0A0B4KFZ9 39357520
    921049 9b1e:X (4.4) BS02 dna N/A GO:0000786 ... A0A0B4KFZ9 39357520
    921050 9b1g:A (2.7) BS01 A1AIK N/A GO:0005886 ... Q96S37 39245778
    921051 9b1h:A (2.9) BS01 A1AIL N/A GO:0005886 ... Q96S37 39245778
    921052 9b1i:A (3.7) BS01 A1AIJ N/A GO:0005886 ... Q96S37 39245778
    921053 9b1j:A (3.0) BS01 URC N/A GO:0005886 ... Q96S37 39245778
    921054 9b1k:A (3.3) BS01 URC N/A GO:0005886 ... Q96S37 39245778
    921055 9b1l:A (3.1) BS01 URC N/A GO:0005886 ... Q96S37 39245778
    921056 9b1m:A (3.0) BS01 VGL N/A GO:0005886 ... Q96S37 39245778
    921057 9b1n:A (3.1) BS01 VGL N/A GO:0005886 ... Q96S37 39245778
    921058 9b1o:A (3.1) BS01 VGL N/A GO:0005886 ... Q96S37 39245778
    921059 9b1p:A (1.75) BS01 peptide N/A N/A P9WPC1 39626090
    921060 9b1p:A (1.75) BS02 MG N/A N/A P9WPC1 39626090
    921061 9b1p:B (1.75) BS01 peptide N/A N/A P9WPC1 39626090
    921062 9b1p:B (1.75) BS02 MG N/A N/A P9WPC1 39626090
    921063 9b1q:A (2.624) BS01 HEM N/A GO:0004833 ... P48775 39106326
    921064 9b1q:A (2.624) BS02 A1AH8 N/A GO:0004833 ... P48775 39106326
    921065 9b1q:A (2.624) BS03 ZIQ N/A GO:0004833 ... P48775 39106326
    921066 9b1q:A (2.624) BS04 A1AH8 N/A GO:0004833 ... P48775 39106326
    921067 9b1q:B (2.624) BS01 A1AH8 N/A GO:0004833 ... P48775 39106326
    921068 9b1q:B (2.624) BS02 HEM N/A GO:0004833 ... P48775 39106326
    921069 9b1q:B (2.624) BS03 A1AH8 N/A GO:0004833 ... P48775 39106326
    921070 9b1q:B (2.624) BS04 ZIQ N/A GO:0004833 ... P48775 39106326
    921071 9b1q:C (2.624) BS01 HEM N/A GO:0004833 ... P48775 39106326
    921072 9b1q:C (2.624) BS02 A1AH8 N/A GO:0004833 ... P48775 39106326
    921073 9b1q:C (2.624) BS03 ZIQ N/A GO:0004833 ... P48775 39106326
    921074 9b1q:C (2.624) BS04 A1AH8 N/A GO:0004833 ... P48775 39106326
    921075 9b1q:D (2.624) BS01 A1AH8 N/A GO:0004833 ... P48775 39106326
    921076 9b1q:D (2.624) BS02 HEM N/A GO:0004833 ... P48775 39106326
    921077 9b1q:D (2.624) BS03 A1AH8 N/A GO:0004833 ... P48775 39106326
    921078 9b1q:D (2.624) BS04 ZIQ N/A GO:0004833 ... P48775 39106326
    921079 9b1u:A (1.46) BS01 PQQ N/A N/A B7KXB5 39116128
    921080 9b1v:A (1.55) BS01 PQQ N/A N/A B7KXB5 39116128
    921081 9b20:A (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921082 9b20:A (1.55) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921083 9b20:A (1.55) BS03 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921084 9b20:B (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921085 9b20:B (1.55) BS02 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921086 9b20:B (1.55) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921087 9b20:B (1.55) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921088 9b21:A (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921089 9b21:A (1.6) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921090 9b21:A (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921091 9b21:A (1.6) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921092 9b21:B (1.6) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921093 9b21:B (1.6) BS02 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921094 9b21:B (1.6) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921095 9b21:B (1.6) BS04 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921096 9b22:A (1.3) BS01 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921097 9b22:A (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921098 9b22:A (1.3) BS03 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921099 9b22:A (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921100 9b22:A (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921101 9b22:B (1.3) BS01 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921102 9b22:B (1.3) BS02 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921103 9b22:B (1.3) BS03 MG 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921104 9b22:B (1.3) BS04 AR6 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921105 9b22:B (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    921106 9b27:A (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921107 9b27:B (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921108 9b27:C (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921109 9b27:C (3.51) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    921110 9b27:D (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921111 9b27:E (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921112 9b27:F (3.51) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921113 9b28:A (3.24) BS01 Y01 N/A N/A J9SQF3 39809942
    921114 9b28:A (3.24) BS02 6OU N/A N/A J9SQF3 39809942
    921115 9b28:A (3.24) BS03 A1AIA N/A N/A J9SQF3 39809942
    921116 9b28:A (3.24) BS04 Y01 N/A N/A J9SQF3 39809942
    921117 9b28:A (3.24) BS05 Y01 N/A N/A J9SQF3 39809942
    921118 9b28:B (3.24) BS01 Y01 N/A N/A J9SQF3 39809942
    921119 9b28:B (3.24) BS02 Y01 N/A N/A J9SQF3 39809942
    921120 9b28:B (3.24) BS03 6OU N/A N/A J9SQF3 39809942
    921121 9b28:B (3.24) BS04 A1AIA N/A N/A J9SQF3 39809942
    921122 9b28:B (3.24) BS05 Y01 N/A N/A J9SQF3 39809942
    921123 9b28:C (3.24) BS01 Y01 N/A N/A J9SQF3 39809942
    921124 9b28:C (3.24) BS02 6OU N/A N/A J9SQF3 39809942
    921125 9b28:C (3.24) BS03 A1AIA N/A N/A J9SQF3 39809942
    921126 9b28:C (3.24) BS04 Y01 N/A N/A J9SQF3 39809942
    921127 9b28:C (3.24) BS05 Y01 N/A N/A J9SQF3 39809942
    921128 9b28:D (3.24) BS01 Y01 N/A N/A J9SQF3 39809942
    921129 9b28:D (3.24) BS02 Y01 N/A N/A J9SQF3 39809942
    921130 9b28:D (3.24) BS03 6OU N/A N/A J9SQF3 39809942
    921131 9b28:D (3.24) BS04 A1AIA N/A N/A J9SQF3 39809942
    921132 9b28:D (3.24) BS05 Y01 N/A N/A J9SQF3 39809942
    921133 9b29:A (3.13) BS01 Y01 N/A N/A J9SQF3 39809942
    921134 9b29:A (3.13) BS02 LBN N/A N/A J9SQF3 39809942
    921135 9b29:B (3.13) BS01 LBN N/A N/A J9SQF3 39809942
    921136 9b29:B (3.13) BS02 Y01 N/A N/A J9SQF3 39809942
    921137 9b29:C (3.13) BS01 LBN N/A N/A J9SQF3 39809942
    921138 9b29:C (3.13) BS02 Y01 N/A N/A J9SQF3 39809942
    921139 9b29:D (3.13) BS01 Y01 N/A N/A J9SQF3 39809942
    921140 9b29:D (3.13) BS02 LBN N/A N/A J9SQF3 39809942
    921141 9b2a:A (3.82) BS01 A1AIB N/A N/A J9SQF3 39809942
    921142 9b2a:A (3.82) BS02 A8W N/A N/A J9SQF3 39809942
    921143 9b2a:B (3.82) BS01 A1AIB N/A N/A J9SQF3 39809942
    921144 9b2a:B (3.82) BS02 A8W N/A N/A J9SQF3 39809942
    921145 9b2a:C (3.82) BS01 A1AIB N/A N/A J9SQF3 39809942
    921146 9b2a:C (3.82) BS02 A8W N/A N/A J9SQF3 39809942
    921147 9b2a:D (3.82) BS01 A8W N/A N/A J9SQF3 39809942
    921148 9b2a:D (3.82) BS02 A1AIB N/A N/A J9SQF3 39809942
    921149 9b2d:A (2.4) BS01 dna N/A N/A P25454 N/A
    921150 9b2d:A (2.4) BS02 ADP N/A N/A P25454 N/A
    921151 9b2d:A (2.4) BS03 AF3 N/A N/A P25454 N/A
    921152 9b2d:B (2.4) BS01 dna N/A N/A P25454 N/A
    921153 9b2d:B (2.4) BS02 ADP N/A N/A P25454 N/A
    921154 9b2d:B (2.4) BS03 ADP N/A N/A P25454 N/A
    921155 9b2d:B (2.4) BS04 AF3 N/A N/A P25454 N/A
    921156 9b2d:C (2.4) BS01 dna N/A N/A P25454 N/A
    921157 9b2d:C (2.4) BS02 ADP N/A N/A P25454 N/A
    921158 9b2d:C (2.4) BS03 AF3 N/A N/A P25454 N/A
    921159 9b2d:C (2.4) BS04 ADP N/A N/A P25454 N/A
    921160 9b2d:D (2.4) BS01 dna N/A N/A P25454 N/A
    921161 9b2d:D (2.4) BS02 ADP N/A N/A P25454 N/A
    921162 9b2d:D (2.4) BS03 ADP N/A N/A P25454 N/A
    921163 9b2d:D (2.4) BS04 AF3 N/A N/A P25454 N/A
    921164 9b2d:E (2.4) BS01 dna N/A N/A P25454 N/A
    921165 9b2d:E (2.4) BS02 ADP N/A N/A P25454 N/A
    921166 9b2d:E (2.4) BS03 ADP N/A N/A P25454 N/A
    921167 9b2d:E (2.4) BS04 AF3 N/A N/A P25454 N/A
    921168 9b2d:F (2.4) BS01 dna N/A N/A P25454 N/A
    921169 9b2d:F (2.4) BS02 ADP N/A N/A P25454 N/A
    921170 9b2d:F (2.4) BS03 ADP N/A N/A P25454 N/A
    921171 9b2d:F (2.4) BS04 AF3 N/A N/A P25454 N/A
    921172 9b2e:A (1.95) BS01 B55 N/A N/A A0A045KE67 39140692
    921173 9b2e:B (1.95) BS01 B55 N/A N/A A0A045KE67 39140692
    921174 9b2h:A (1.32) BS01 A1AIH N/A GO:0004190 ... Q7SSI0 38973505
    921175 9b2h:B (1.32) BS01 A1AIH N/A GO:0004190 ... Q7SSI0 38973505
    921176 9b2i:A (2.35) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921177 9b2i:A (2.35) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921178 9b2i:B (2.35) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921179 9b2i:B (2.35) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921180 9b2i:C (2.35) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921181 9b2i:C (2.35) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921182 9b2j:A (2.35) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921183 9b2j:A (2.35) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921184 9b2j:B (2.35) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921185 9b2j:B (2.35) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921186 9b2j:C (2.35) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921187 9b2j:C (2.35) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921188 9b2l:A (2.2) BS01 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921189 9b2l:A (2.2) BS02 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921190 9b2l:B (2.2) BS01 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921191 9b2l:B (2.2) BS02 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921192 9b2n:A (1.9) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921193 9b2n:B (1.9) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921194 9b2n:C (1.9) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921195 9b2o:F (1.85) BS01 A1AI3 N/A GO:0016787 ... A0A023DFE8 39328773
    921196 9b2o:F (1.85) BS02 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921197 9b2o:F (1.85) BS03 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921198 9b2o:L (1.85) BS01 A1AI3 N/A GO:0016787 ... A0A023DFE8 39328773
    921199 9b2o:L (1.85) BS02 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921200 9b2o:L (1.85) BS03 FE N/A GO:0016787 ... A0A023DFE8 39328773

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).