SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921201 9b2o:X (1.85) BS01 A1AI3 N/A GO:0016787 ... A0A023DFE8 39328773
    921202 9b2o:X (1.85) BS02 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921203 9b2o:X (1.85) BS03 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921204 9b2p:A (2.25) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921205 9b2p:A (2.25) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921206 9b2p:P (2.25) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921207 9b2p:P (2.25) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921208 9b2p:X (2.25) BS01 CO N/A GO:0016787 ... A0A023DFE8 39328773
    921209 9b2p:X (2.25) BS02 FE N/A GO:0016787 ... A0A023DFE8 39328773
    921210 9b2s:A (3.01) BS01 dna N/A N/A P84233 N/A
    921211 9b2s:A (3.01) BS02 dna N/A N/A P84233 N/A
    921212 9b2s:B (3.01) BS01 dna N/A N/A P62799 N/A
    921213 9b2s:C (3.01) BS01 dna N/A N/A Q6AZJ8 N/A
    921214 9b2s:C (3.01) BS02 dna N/A N/A Q6AZJ8 N/A
    921215 9b2s:D (3.01) BS01 dna N/A N/A P02281 N/A
    921216 9b2s:D (3.01) BS02 dna N/A N/A P02281 N/A
    921217 9b2s:E (3.01) BS01 dna N/A N/A P84233 N/A
    921218 9b2s:E (3.01) BS02 dna N/A N/A P84233 N/A
    921219 9b2s:F (3.01) BS01 dna N/A N/A P62799 N/A
    921220 9b2s:G (3.01) BS01 dna N/A N/A Q6AZJ8 N/A
    921221 9b2s:G (3.01) BS02 dna N/A N/A Q6AZJ8 N/A
    921222 9b2s:H (3.01) BS01 dna N/A N/A P02281 N/A
    921223 9b2s:H (3.01) BS02 dna N/A N/A P02281 N/A
    921224 9b2s:K (3.01) BS01 dna N/A N/A Q8TF76 N/A
    921225 9b2s:K (3.01) BS02 dna N/A N/A Q8TF76 N/A
    921226 9b2t:A (2.99) BS01 dna N/A N/A P84233 N/A
    921227 9b2t:A (2.99) BS02 dna N/A N/A P84233 N/A
    921228 9b2t:B (2.99) BS01 dna N/A N/A P62799 N/A
    921229 9b2t:C (2.99) BS01 dna N/A N/A Q6AZJ8 N/A
    921230 9b2t:C (2.99) BS02 dna N/A N/A Q6AZJ8 N/A
    921231 9b2t:D (2.99) BS01 dna N/A N/A P02281 N/A
    921232 9b2t:D (2.99) BS02 dna N/A N/A P02281 N/A
    921233 9b2t:E (2.99) BS01 dna N/A N/A P84233 N/A
    921234 9b2t:E (2.99) BS02 dna N/A N/A P84233 N/A
    921235 9b2t:F (2.99) BS01 dna N/A N/A P62799 N/A
    921236 9b2t:G (2.99) BS01 dna N/A N/A Q6AZJ8 N/A
    921237 9b2t:H (2.99) BS01 dna N/A N/A P02281 N/A
    921238 9b2t:H (2.99) BS02 dna N/A N/A P02281 N/A
    921239 9b2t:K (2.99) BS01 dna N/A N/A Q8TF76 N/A
    921240 9b2t:K (2.99) BS02 dna N/A N/A Q8TF76 N/A
    921241 9b2u:K (3.64) BS01 peptide N/A N/A Q8TF76 N/A
    921242 9b2z:A (2.83) BS01 AMP N/A N/A Q5ZSJ0 39694182
    921243 9b2z:B (2.83) BS01 LAB N/A N/A P60709 39694182
    921244 9b2z:B (2.83) BS02 ATP N/A N/A P60709 39694182
    921245 9b33:E (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    921246 9b33:E (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    921247 9b33:F (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    921248 9b33:F (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    921249 9b34:E (3.58) BS01 ZN ? GO:0030246 ... P02866 38778115
    921250 9b34:E (3.58) BS02 CA ? GO:0030246 ... P02866 38778115
    921251 9b34:F (3.58) BS01 ZN ? GO:0030246 ... P02866 38778115
    921252 9b34:F (3.58) BS02 CA ? GO:0030246 ... P02866 38778115
    921253 9b35:A (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    921254 9b35:B (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    921255 9b35:C (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    921256 9b35:D (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    921257 9b36:A (4.29) BS01 GAL ? GO:0005216 ... P42260 38778115
    921258 9b36:A (4.29) BS02 2J9 ? GO:0005216 ... P42260 38778115
    921259 9b36:A (4.29) BS03 GLU ? GO:0005216 ... P42260 38778115
    921260 9b36:A (4.29) BS04 CLR ? GO:0005216 ... P42260 38778115
    921261 9b36:A (4.29) BS05 CLR ? GO:0005216 ... P42260 38778115
    921262 9b36:A (4.29) BS06 2J9 ? GO:0005216 ... P42260 38778115
    921263 9b36:B (4.29) BS01 2J9 ? GO:0005216 ... P42260 38778115
    921264 9b36:B (4.29) BS02 GLU ? GO:0005216 ... P42260 38778115
    921265 9b36:B (4.29) BS03 2J9 ? GO:0005216 ... P42260 38778115
    921266 9b36:C (4.29) BS01 MAN ? GO:0005216 ... P42260 38778115
    921267 9b36:C (4.29) BS02 2J9 ? GO:0005216 ... P42260 38778115
    921268 9b36:C (4.29) BS03 CLR ? GO:0005216 ... P42260 38778115
    921269 9b36:C (4.29) BS04 2J9 ? GO:0005216 ... P42260 38778115
    921270 9b36:C (4.29) BS05 GLU ? GO:0005216 ... P42260 38778115
    921271 9b36:C (4.29) BS06 CLR ? GO:0005216 ... P42260 38778115
    921272 9b36:D (4.29) BS01 2J9 ? GO:0005216 ... P42260 38778115
    921273 9b36:D (4.29) BS02 2J9 ? GO:0005216 ... P42260 38778115
    921274 9b36:D (4.29) BS03 GLU ? GO:0005216 ... P42260 38778115
    921275 9b36:E (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    921276 9b36:E (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    921277 9b36:E (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    921278 9b36:F (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    921279 9b36:F (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    921280 9b36:F (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    921281 9b36:G (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    921282 9b36:G (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    921283 9b36:G (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    921284 9b36:H (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    921285 9b36:H (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    921286 9b36:H (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    921287 9b37:A (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    921288 9b37:A (6.66) BS02 GLU ? GO:0005216 ... P42260 38778115
    921289 9b37:A (6.66) BS03 CLR ? GO:0005216 ... P42260 38778115
    921290 9b37:A (6.66) BS04 CLR ? GO:0005216 ... P42260 38778115
    921291 9b37:A (6.66) BS05 2J9 ? GO:0005216 ... P42260 38778115
    921292 9b37:B (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    921293 9b37:B (6.66) BS02 GLU ? GO:0005216 ... P42260 38778115
    921294 9b37:B (6.66) BS03 2J9 ? GO:0005216 ... P42260 38778115
    921295 9b37:C (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    921296 9b37:C (6.66) BS02 CLR ? GO:0005216 ... P42260 38778115
    921297 9b37:C (6.66) BS03 2J9 ? GO:0005216 ... P42260 38778115
    921298 9b37:C (6.66) BS04 GLU ? GO:0005216 ... P42260 38778115
    921299 9b37:C (6.66) BS05 CLR ? GO:0005216 ... P42260 38778115
    921300 9b37:D (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    921301 9b37:D (6.66) BS02 CLR ? GO:0005216 ... P42260 38778115
    921302 9b37:D (6.66) BS03 2J9 ? GO:0005216 ... P42260 38778115
    921303 9b37:D (6.66) BS04 GLU ? GO:0005216 ... P42260 38778115
    921304 9b37:E (6.66) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    921305 9b37:E (6.66) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    921306 9b37:F (6.66) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    921307 9b37:F (6.66) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    921308 9b37:F (6.66) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    921309 9b38:A (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    921310 9b38:A (3.36) BS02 MAN ? GO:0005216 ... P42260 38778115
    921311 9b38:B (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    921312 9b38:C (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    921313 9b38:C (3.36) BS02 MAN ? GO:0005216 ... P42260 38778115
    921314 9b38:D (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    921315 9b39:A (3.84) BS01 MAN ? GO:0005216 ... P42260 38778115
    921316 9b39:A (3.84) BS02 GLU ? GO:0005216 ... P42260 38778115
    921317 9b39:B (3.84) BS01 GLU ? GO:0005216 ... P42260 38778115
    921318 9b39:C (3.84) BS01 GLU ? GO:0005216 ... P42260 38778115
    921319 9b39:D (3.84) BS01 GLU ? GO:0005216 ... P42260 38778115
    921320 9b3b:A (1.62) BS01 A1AIM N/A GO:0005634 ... Q9NUW8 N/A
    921321 9b3b:B (1.62) BS01 A1AIM N/A GO:0005634 ... Q9NUW8 N/A
    921322 9b3d:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921323 9b3d:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921324 9b3d:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921325 9b3d:C (3.41) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    921326 9b3d:D (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921327 9b3d:E (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921328 9b3d:F (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    921329 9b3i:D (2.88) BS01 GTP N/A N/A P32835 39601790
    921330 9b3n:A (1.5) BS01 BGC N/A N/A P46531 39488203
    921331 9b3n:A (1.5) BS02 XYP N/A N/A P46531 39488203
    921332 9b3n:A (1.5) BS03 BGC N/A N/A P46531 39488203
    921333 9b3n:A (1.5) BS04 FUC N/A N/A P46531 39488203
    921334 9b3n:A (1.5) BS05 FUC N/A N/A P46531 39488203
    921335 9b3n:A (1.5) BS06 FUC N/A N/A P46531 39488203
    921336 9b3n:A (1.5) BS07 CA N/A N/A P46531 39488203
    921337 9b3n:A (1.5) BS08 CA N/A N/A P46531 39488203
    921338 9b3n:A (1.5) BS09 CA N/A N/A P46531 39488203
    921339 9b3n:A (1.5) BS10 CA N/A N/A P46531 39488203
    921340 9b3p:A (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    921341 9b3p:A (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    921342 9b3p:B (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    921343 9b3p:B (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    921344 9b3p:C (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    921345 9b3p:C (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    921346 9b3p:D (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    921347 9b3p:D (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    921348 9b3p:E (3.0) BS01 dna ? GO:0000775 ... P84243 38920622
    921349 9b3p:E (3.0) BS02 dna ? GO:0000775 ... P84243 38920622
    921350 9b3p:F (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    921351 9b3p:F (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    921352 9b3p:G (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    921353 9b3p:G (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    921354 9b3p:H (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    921355 9b3p:H (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    921356 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    921357 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    921358 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    921359 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    921360 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    921361 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    921362 9b3z:A (3.0) BS01 FZ4 N/A N/A Q9WUD2 N/A
    921363 9b3z:A (3.0) BS02 RTO N/A N/A Q9WUD2 N/A
    921364 9b3z:A (3.0) BS03 RTO N/A N/A Q9WUD2 N/A
    921365 9b3z:B (3.0) BS01 FZ4 N/A N/A Q9WUD2 N/A
    921366 9b3z:B (3.0) BS02 RTO N/A N/A Q9WUD2 N/A
    921367 9b3z:B (3.0) BS03 RTO N/A N/A Q9WUD2 N/A
    921368 9b3z:C (3.0) BS01 FZ4 N/A N/A Q9WUD2 N/A
    921369 9b3z:C (3.0) BS02 RTO N/A N/A Q9WUD2 N/A
    921370 9b3z:C (3.0) BS03 RTO N/A N/A Q9WUD2 N/A
    921371 9b3z:D (3.0) BS01 RTO N/A N/A Q9WUD2 N/A
    921372 9b3z:D (3.0) BS02 FZ4 N/A N/A Q9WUD2 N/A
    921373 9b3z:D (3.0) BS03 RTO N/A N/A Q9WUD2 N/A
    921374 9b45:d (3.3) BS01 peptide N/A N/A A0A5P1KVA7 39370451
    921375 9b45:e (3.3) BS01 peptide N/A N/A A0A5P1KVA7 39370451
    921376 9b45:f (3.3) BS01 peptide N/A N/A A0A5P1KVA7 39370451
    921377 9b45:g (3.3) BS01 peptide N/A N/A A0A5Q5ANV0 39370451
    921378 9b45:g (3.3) BS02 peptide N/A N/A A0A5Q5ANV0 39370451
    921379 9b45:g (3.3) BS03 peptide N/A N/A A0A5Q5ANV0 39370451
    921380 9b45:h (3.3) BS01 peptide N/A N/A A0A5Q5ANV0 39370451
    921381 9b45:h (3.3) BS02 peptide N/A N/A A0A5Q5ANV0 39370451
    921382 9b45:h (3.3) BS03 peptide N/A N/A A0A5Q5ANV0 39370451
    921383 9b45:i (3.3) BS01 peptide N/A N/A A0A5Q5ANV0 39370451
    921384 9b45:i (3.3) BS02 peptide N/A N/A A0A5Q5ANV0 39370451
    921385 9b4e:A (2.7) BS01 P5S N/A GO:0006659 ... P48651 39208797
    921386 9b4e:A (2.7) BS02 P5S N/A GO:0006659 ... P48651 39208797
    921387 9b4e:A (2.7) BS03 LBN N/A GO:0006659 ... P48651 39208797
    921388 9b4e:A (2.7) BS04 A1AIS N/A GO:0006659 ... P48651 39208797
    921389 9b4e:A (2.7) BS05 6OU N/A GO:0006659 ... P48651 39208797
    921390 9b4e:A (2.7) BS06 CA N/A GO:0006659 ... P48651 39208797
    921391 9b4e:A (2.7) BS07 LBN N/A GO:0006659 ... P48651 39208797
    921392 9b4e:A (2.7) BS08 LBN N/A GO:0006659 ... P48651 39208797
    921393 9b4e:B (2.7) BS01 LBN N/A GO:0006659 ... P48651 39208797
    921394 9b4e:B (2.7) BS02 LBN N/A GO:0006659 ... P48651 39208797
    921395 9b4e:B (2.7) BS03 P5S N/A GO:0006659 ... P48651 39208797
    921396 9b4e:B (2.7) BS04 P5S N/A GO:0006659 ... P48651 39208797
    921397 9b4e:B (2.7) BS05 LBN N/A GO:0006659 ... P48651 39208797
    921398 9b4e:B (2.7) BS06 A1AIS N/A GO:0006659 ... P48651 39208797
    921399 9b4e:B (2.7) BS07 6OU N/A GO:0006659 ... P48651 39208797
    921400 9b4e:B (2.7) BS08 CA N/A GO:0006659 ... P48651 39208797

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).