SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921201 8y37:M (2.53) BS02 rna N/A GO:0003735 ... Q2FW22 38992047
    921202 8y37:N (2.53) BS01 rna N/A GO:0003735 ... Q2FZ42 38992047
    921203 8y37:O (2.53) BS01 rna N/A GO:0000027 ... Q2FXQ1 38992047
    921204 8y37:P (2.53) BS01 rna N/A GO:0003723 ... Q2FXS8 38992047
    921205 8y37:Q (2.53) BS01 rna N/A GO:0003735 ... Q2FW11 38992047
    921206 8y37:R (2.53) BS01 rna N/A GO:0003735 ... Q2FW08 38992047
    921207 8y37:S (2.53) BS01 rna N/A GO:0003723 ... Q2FW17 38992047
    921208 8y37:T (2.53) BS01 rna N/A GO:0003735 ... Q7A1S4 38992047
    921209 8y37:U (2.53) BS01 rna N/A GO:0003735 ... Q2FXT0 38992047
    921210 8y37:U (2.53) BS02 rna N/A GO:0003735 ... Q2FXT0 38992047
    921211 8y37:V (2.53) BS01 rna N/A GO:0003735 ... Q2FZ60 38992047
    921212 8y37:W (2.53) BS01 rna N/A GO:0003735 ... Q2FW14 38992047
    921213 8y37:X (2.53) BS01 rna N/A GO:0003735 ... P0A0G2 38992047
    921214 8y37:X (2.53) BS02 rna N/A GO:0003735 ... P0A0G2 38992047
    921215 8y37:Y (2.53) BS01 rna N/A GO:0003735 ... Q2FWD8 38992047
    921216 8y37:Z (2.53) BS01 rna N/A GO:0003735 ... P66211 38992047
    921217 8y38:1 (2.58) BS01 rna N/A GO:0003735 ... Q2FYU6 38992047
    921218 8y38:2 (2.58) BS01 rna N/A GO:0003735 ... Q2FUQ0 38992047
    921219 8y38:3 (2.58) BS01 rna N/A GO:0003735 ... Q2FXQ0 38992047
    921220 8y38:4 (2.58) BS01 rna N/A GO:0003735 ... Q2FW29 38992047
    921221 8y38:C (2.58) BS01 rna N/A GO:0002181 ... P60430 38992047
    921222 8y38:D (2.58) BS01 rna N/A GO:0003735 ... Q2FW06 38992047
    921223 8y38:E (2.58) BS01 rna N/A GO:0003735 ... Q2FW07 38992047
    921224 8y38:F (2.58) BS01 rna N/A GO:0000049 ... Q2FW18 38992047
    921225 8y38:F (2.58) BS02 rna N/A GO:0000049 ... Q2FW18 38992047
    921226 8y38:G (2.58) BS01 rna N/A GO:0002181 ... Q2FW21 38992047
    921227 8y38:H (2.58) BS01 rna N/A GO:0003729 ... Q2FW38 38992047
    921228 8y38:I (2.58) BS01 rna N/A GO:0003735 ... Q2FW16 38992047
    921229 8y38:I (2.58) BS02 rna N/A GO:0003735 ... Q2FW16 38992047
    921230 8y38:J (2.58) BS01 rna N/A GO:0003735 ... P0A0F8 38992047
    921231 8y38:K (2.58) BS01 rna N/A GO:0003735 ... Q2FW13 38992047
    921232 8y38:K (2.58) BS02 rna N/A GO:0003735 ... Q2FW13 38992047
    921233 8y38:L (2.58) BS01 rna N/A GO:0003735 ... Q2FW33 38992047
    921234 8y38:M (2.58) BS01 rna N/A GO:0003735 ... Q2FW22 38992047
    921235 8y38:M (2.58) BS02 rna N/A GO:0003735 ... Q2FW22 38992047
    921236 8y38:N (2.58) BS01 rna N/A GO:0003735 ... Q2FZ42 38992047
    921237 8y38:O (2.58) BS01 rna N/A GO:0000027 ... Q2FXQ1 38992047
    921238 8y38:P (2.58) BS01 rna N/A GO:0003723 ... Q2FXS8 38992047
    921239 8y38:Q (2.58) BS01 rna N/A GO:0003735 ... Q2FW11 38992047
    921240 8y38:R (2.58) BS01 rna N/A GO:0003735 ... Q2FW08 38992047
    921241 8y38:S (2.58) BS01 rna N/A GO:0003723 ... Q2FW17 38992047
    921242 8y38:T (2.58) BS01 rna N/A GO:0003735 ... Q7A1S4 38992047
    921243 8y38:U (2.58) BS01 rna N/A GO:0003735 ... Q2FXT0 38992047
    921244 8y38:U (2.58) BS02 rna N/A GO:0003735 ... Q2FXT0 38992047
    921245 8y38:V (2.58) BS01 rna N/A GO:0003735 ... Q2FZ60 38992047
    921246 8y38:W (2.58) BS01 rna N/A GO:0003735 ... Q2FW14 38992047
    921247 8y38:X (2.58) BS01 rna N/A GO:0003735 ... P0A0G2 38992047
    921248 8y38:X (2.58) BS02 rna N/A GO:0003735 ... P0A0G2 38992047
    921249 8y38:Z (2.58) BS01 rna N/A GO:0003735 ... P66211 38992047
    921250 8y38:b (2.58) BS01 rna N/A GO:0003735 ... Q2FZ25 38992047
    921251 8y38:c (2.58) BS01 rna N/A GO:0003676 ... Q2FW12 38992047
    921252 8y38:d (2.58) BS01 rna N/A GO:0003723 ... Q2FXK6 38992047
    921253 8y38:e (2.58) BS01 rna N/A GO:0003723 ... Q2FW23 38992047
    921254 8y38:f (2.58) BS01 rna N/A GO:0003735 ... Q2G113 38992047
    921255 8y38:g (2.58) BS01 rna N/A GO:0000049 ... P48940 38992047
    921256 8y38:h (2.58) BS01 rna N/A GO:0003735 ... Q2FW20 38992047
    921257 8y38:i (2.58) BS01 rna N/A GO:0003723 ... Q2FW39 38992047
    921258 8y38:j (2.58) BS01 rna N/A GO:0000049 ... P66335 38992047
    921259 8y38:k (2.58) BS01 rna N/A GO:0003735 ... Q2FW31 38992047
    921260 8y38:l (2.58) BS01 rna N/A GO:0000049 ... P0A0H0 38992047
    921261 8y38:m (2.58) BS01 rna N/A GO:0000049 ... Q2FW30 38992047
    921262 8y38:n (2.58) BS01 rna N/A GO:0003735 ... Q2FW19 38992047
    921263 8y38:o (2.58) BS01 rna N/A GO:0003735 ... Q2G2Q1 38992047
    921264 8y38:p (2.58) BS01 rna N/A GO:0003735 ... Q2FZ45 38992047
    921265 8y38:q (2.58) BS01 rna N/A GO:0003735 ... Q2FW15 38992047
    921266 8y38:r (2.58) BS01 rna N/A GO:0003735 ... Q2G111 38992047
    921267 8y38:s (2.58) BS01 rna N/A GO:0003723 ... Q2FW10 38992047
    921268 8y38:t (2.58) BS01 rna N/A GO:0003723 ... Q2FXY6 38992047
    921269 8y39:1 (3.6) BS01 rna N/A GO:0003735 ... Q2FYU6 38992047
    921270 8y39:2 (3.6) BS01 rna N/A GO:0003735 ... Q2FUQ0 38992047
    921271 8y39:3 (3.6) BS01 rna N/A GO:0003735 ... Q2FXQ0 38992047
    921272 8y39:4 (3.6) BS01 rna N/A GO:0003735 ... Q2FW29 38992047
    921273 8y39:C (3.6) BS01 rna N/A GO:0002181 ... P60430 38992047
    921274 8y39:D (3.6) BS01 rna N/A GO:0003735 ... Q2FW06 38992047
    921275 8y39:E (3.6) BS01 rna N/A GO:0003735 ... Q2FW07 38992047
    921276 8y39:F (3.6) BS01 rna N/A GO:0000049 ... Q2FW18 38992047
    921277 8y39:F (3.6) BS02 rna N/A GO:0000049 ... Q2FW18 38992047
    921278 8y39:G (3.6) BS01 rna N/A GO:0002181 ... Q2FW21 38992047
    921279 8y39:H (3.6) BS01 rna N/A GO:0003729 ... Q2FW38 38992047
    921280 8y39:I (3.6) BS01 rna N/A GO:0003735 ... Q2FW16 38992047
    921281 8y39:I (3.6) BS02 rna N/A GO:0003735 ... Q2FW16 38992047
    921282 8y39:J (3.6) BS01 rna N/A GO:0003735 ... P0A0F8 38992047
    921283 8y39:K (3.6) BS01 rna N/A GO:0003735 ... Q2FW13 38992047
    921284 8y39:K (3.6) BS02 rna N/A GO:0003735 ... Q2FW13 38992047
    921285 8y39:L (3.6) BS01 rna N/A GO:0003735 ... Q2FW33 38992047
    921286 8y39:M (3.6) BS01 rna N/A GO:0003735 ... Q2FW22 38992047
    921287 8y39:M (3.6) BS02 rna N/A GO:0003735 ... Q2FW22 38992047
    921288 8y39:N (3.6) BS01 rna N/A GO:0003735 ... Q2FZ42 38992047
    921289 8y39:O (3.6) BS01 rna N/A GO:0000027 ... Q2FXQ1 38992047
    921290 8y39:P (3.6) BS01 rna N/A GO:0003723 ... Q2FXS8 38992047
    921291 8y39:Q (3.6) BS01 rna N/A GO:0003735 ... Q2FW11 38992047
    921292 8y39:R (3.6) BS01 rna N/A GO:0003735 ... Q2FW08 38992047
    921293 8y39:S (3.6) BS01 rna N/A GO:0003723 ... Q2FW17 38992047
    921294 8y39:T (3.6) BS01 rna N/A GO:0003735 ... Q7A1S4 38992047
    921295 8y39:U (3.6) BS01 rna N/A GO:0003735 ... Q2FXT0 38992047
    921296 8y39:U (3.6) BS02 rna N/A GO:0003735 ... Q2FXT0 38992047
    921297 8y39:V (3.6) BS01 rna N/A GO:0003735 ... Q2FZ60 38992047
    921298 8y39:W (3.6) BS01 rna N/A GO:0003735 ... P66174 38992047
    921299 8y39:X (3.6) BS01 rna N/A GO:0003735 ... P0A0G2 38992047
    921300 8y39:X (3.6) BS02 rna N/A GO:0003735 ... P0A0G2 38992047
    921301 8y39:Z (3.6) BS01 rna N/A GO:0003735 ... P66211 38992047
    921302 8y39:b (3.6) BS01 rna N/A GO:0003735 ... Q2FZ25 38992047
    921303 8y39:c (3.6) BS01 rna N/A GO:0003676 ... Q2FW12 38992047
    921304 8y39:d (3.6) BS01 rna N/A GO:0003723 ... Q2FXK6 38992047
    921305 8y39:e (3.6) BS01 rna N/A GO:0003723 ... Q2FW23 38992047
    921306 8y39:f (3.6) BS01 rna N/A GO:0003735 ... Q2G113 38992047
    921307 8y39:g (3.6) BS01 rna N/A GO:0000049 ... P48940 38992047
    921308 8y39:h (3.6) BS01 rna N/A GO:0003735 ... Q2FW20 38992047
    921309 8y39:i (3.6) BS01 rna N/A GO:0003723 ... Q2FW39 38992047
    921310 8y39:j (3.6) BS01 rna N/A GO:0000049 ... P66335 38992047
    921311 8y39:k (3.6) BS01 rna N/A GO:0003735 ... Q2FW31 38992047
    921312 8y39:l (3.6) BS01 rna N/A GO:0000049 ... P0A0H0 38992047
    921313 8y39:m (3.6) BS01 rna N/A GO:0000049 ... Q2FW30 38992047
    921314 8y39:n (3.6) BS01 rna N/A GO:0003735 ... Q2FW19 38992047
    921315 8y39:o (3.6) BS01 rna N/A GO:0003735 ... Q2G2Q1 38992047
    921316 8y39:p (3.6) BS01 rna N/A GO:0003735 ... Q2FZ45 38992047
    921317 8y39:q (3.6) BS01 rna N/A GO:0003735 ... Q2FW15 38992047
    921318 8y39:r (3.6) BS01 rna N/A GO:0003735 ... Q2G111 38992047
    921319 8y39:s (3.6) BS01 rna N/A GO:0003723 ... Q2FW10 38992047
    921320 8y39:t (3.6) BS01 rna N/A GO:0003723 ... Q2FXY6 38992047
    921321 8y3c:A (5.21) BS01 dna N/A GO:0000786 ... P68431 39539301
    921322 8y3c:A (5.21) BS02 dna N/A GO:0000786 ... P68431 39539301
    921323 8y3c:B (5.21) BS01 dna N/A GO:0000781 ... P62805 39539301
    921324 8y3c:B (5.21) BS02 dna N/A GO:0000781 ... P62805 39539301
    921325 8y3c:C (5.21) BS01 dna N/A GO:0000786 ... P04908 39539301
    921326 8y3c:C (5.21) BS02 dna N/A GO:0000786 ... P04908 39539301
    921327 8y3c:D (5.21) BS01 dna N/A GO:0000786 ... P06899 39539301
    921328 8y3c:D (5.21) BS02 dna N/A GO:0000786 ... P06899 39539301
    921329 8y3c:E (5.21) BS01 dna N/A GO:0000786 ... P68431 39539301
    921330 8y3c:E (5.21) BS02 dna N/A GO:0000786 ... P68431 39539301
    921331 8y3c:F (5.21) BS01 dna N/A GO:0000781 ... P62805 39539301
    921332 8y3c:F (5.21) BS02 dna N/A GO:0000781 ... P62805 39539301
    921333 8y3c:G (5.21) BS01 dna N/A GO:0000786 ... P04908 39539301
    921334 8y3c:G (5.21) BS02 dna N/A GO:0000786 ... P04908 39539301
    921335 8y3c:H (5.21) BS01 dna N/A GO:0000786 ... P06899 39539301
    921336 8y3c:K (5.21) BS01 dna N/A GO:0000786 ... P68431 39539301
    921337 8y3c:K (5.21) BS02 dna N/A GO:0000786 ... P68431 39539301
    921338 8y3c:L (5.21) BS01 dna N/A GO:0000781 ... P62805 39539301
    921339 8y3c:L (5.21) BS02 dna N/A GO:0000781 ... P62805 39539301
    921340 8y3c:M (5.21) BS01 dna N/A GO:0000786 ... P04908 39539301
    921341 8y3c:M (5.21) BS02 dna N/A GO:0000786 ... P04908 39539301
    921342 8y3c:N (5.21) BS01 dna N/A GO:0000786 ... P06899 39539301
    921343 8y3c:O (5.21) BS01 dna N/A GO:0000786 ... P68431 39539301
    921344 8y3c:O (5.21) BS02 dna N/A GO:0000786 ... P68431 39539301
    921345 8y3c:P (5.21) BS01 dna N/A GO:0000781 ... P62805 39539301
    921346 8y3d:A (5.1) BS01 dna N/A GO:0000786 ... P68431 39539301
    921347 8y3d:A (5.1) BS02 dna N/A GO:0000786 ... P68431 39539301
    921348 8y3d:B (5.1) BS01 dna N/A GO:0000781 ... P62805 39539301
    921349 8y3d:B (5.1) BS02 dna N/A GO:0000781 ... P62805 39539301
    921350 8y3d:C (5.1) BS01 dna N/A GO:0000786 ... P04908 39539301
    921351 8y3d:C (5.1) BS02 dna N/A GO:0000786 ... P04908 39539301
    921352 8y3d:D (5.1) BS01 dna N/A GO:0000786 ... P06899 39539301
    921353 8y3d:D (5.1) BS02 dna N/A GO:0000786 ... P06899 39539301
    921354 8y3d:E (5.1) BS01 dna N/A GO:0000786 ... P68431 39539301
    921355 8y3d:E (5.1) BS02 dna N/A GO:0000786 ... P68431 39539301
    921356 8y3d:F (5.1) BS01 dna N/A GO:0000781 ... P62805 39539301
    921357 8y3d:F (5.1) BS02 dna N/A GO:0000781 ... P62805 39539301
    921358 8y3d:G (5.1) BS01 dna N/A GO:0000786 ... P04908 39539301
    921359 8y3d:G (5.1) BS02 dna N/A GO:0000786 ... P04908 39539301
    921360 8y3d:H (5.1) BS01 dna N/A GO:0000786 ... P06899 39539301
    921361 8y3d:H (5.1) BS02 dna N/A GO:0000786 ... P06899 39539301
    921362 8y3d:K (5.1) BS01 dna N/A GO:0000786 ... P68431 39539301
    921363 8y3d:K (5.1) BS02 dna N/A GO:0000786 ... P68431 39539301
    921364 8y3d:L (5.1) BS01 dna N/A GO:0000781 ... P62805 39539301
    921365 8y3d:L (5.1) BS02 dna N/A GO:0000781 ... P62805 39539301
    921366 8y3d:M (5.1) BS01 dna N/A GO:0000786 ... P04908 39539301
    921367 8y3d:M (5.1) BS02 dna N/A GO:0000786 ... P04908 39539301
    921368 8y3d:N (5.1) BS01 dna N/A GO:0000786 ... P06899 39539301
    921369 8y3d:N (5.1) BS02 dna N/A GO:0000786 ... P06899 39539301
    921370 8y3d:O (5.1) BS01 dna N/A GO:0000786 ... P68431 39539301
    921371 8y3d:O (5.1) BS02 dna N/A GO:0000786 ... P68431 39539301
    921372 8y3d:P (5.1) BS01 dna N/A GO:0000781 ... P62805 39539301
    921373 8y3d:P (5.1) BS02 dna N/A GO:0000781 ... P62805 39539301
    921374 8y3e:A (5.32) BS01 dna N/A GO:0000786 ... P68431 39539301
    921375 8y3e:A (5.32) BS02 dna N/A GO:0000786 ... P68431 39539301
    921376 8y3e:B (5.32) BS01 dna N/A GO:0000781 ... P62805 39539301
    921377 8y3e:B (5.32) BS02 dna N/A GO:0000781 ... P62805 39539301
    921378 8y3e:C (5.32) BS01 dna N/A GO:0000786 ... P04908 39539301
    921379 8y3e:C (5.32) BS02 dna N/A GO:0000786 ... P04908 39539301
    921380 8y3e:D (5.32) BS01 dna N/A GO:0000786 ... P06899 39539301
    921381 8y3e:D (5.32) BS02 dna N/A GO:0000786 ... P06899 39539301
    921382 8y3e:E (5.32) BS01 dna N/A GO:0000786 ... P68431 39539301
    921383 8y3e:E (5.32) BS02 dna N/A GO:0000786 ... P68431 39539301
    921384 8y3e:F (5.32) BS01 dna N/A GO:0000781 ... P62805 39539301
    921385 8y3e:G (5.32) BS01 dna N/A GO:0000786 ... P04908 39539301
    921386 8y3e:G (5.32) BS02 dna N/A GO:0000786 ... P04908 39539301
    921387 8y3e:H (5.32) BS01 dna N/A GO:0000786 ... P06899 39539301
    921388 8y3e:K (5.32) BS01 dna N/A GO:0000786 ... P68431 39539301
    921389 8y3e:K (5.32) BS02 dna N/A GO:0000786 ... P68431 39539301
    921390 8y3e:L (5.32) BS01 dna N/A GO:0000781 ... P62805 39539301
    921391 8y3e:L (5.32) BS02 dna N/A GO:0000781 ... P62805 39539301
    921392 8y3e:M (5.32) BS01 dna N/A GO:0000786 ... P04908 39539301
    921393 8y3e:M (5.32) BS02 dna N/A GO:0000786 ... P04908 39539301
    921394 8y3e:N (5.32) BS01 dna N/A GO:0000786 ... P06899 39539301
    921395 8y3e:N (5.32) BS02 dna N/A GO:0000786 ... P06899 39539301
    921396 8y3e:O (5.32) BS01 dna N/A GO:0000786 ... P68431 39539301
    921397 8y3e:O (5.32) BS02 dna N/A GO:0000786 ... P68431 39539301
    921398 8y3e:P (5.32) BS01 dna N/A GO:0000781 ... P62805 39539301
    921399 8y3e:P (5.32) BS02 dna N/A GO:0000781 ... P62805 39539301
    921400 8y3f:A (4.54) BS01 dna N/A GO:0000786 ... P68431 39539301

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).