SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4598 4599 4600 4601 4602 4603 4604 4605 4606 4607 4608 4609 4610 4611 4612 4613 4614 4615 4616 4617 4618 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921401 8y3f:A (4.54) BS02 dna N/A GO:0000786 ... P68431 39539301
    921402 8y3f:B (4.54) BS01 dna N/A GO:0000781 ... P62805 39539301
    921403 8y3f:C (4.54) BS01 dna N/A GO:0000786 ... P04908 39539301
    921404 8y3f:C (4.54) BS02 dna N/A GO:0000786 ... P04908 39539301
    921405 8y3f:D (4.54) BS01 dna N/A GO:0000786 ... P06899 39539301
    921406 8y3f:D (4.54) BS02 dna N/A GO:0000786 ... P06899 39539301
    921407 8y3f:E (4.54) BS01 dna N/A GO:0000786 ... P68431 39539301
    921408 8y3f:E (4.54) BS02 dna N/A GO:0000786 ... P68431 39539301
    921409 8y3f:F (4.54) BS01 dna N/A GO:0000781 ... P62805 39539301
    921410 8y3f:F (4.54) BS02 dna N/A GO:0000781 ... P62805 39539301
    921411 8y3f:G (4.54) BS01 dna N/A GO:0000786 ... P04908 39539301
    921412 8y3f:G (4.54) BS02 dna N/A GO:0000786 ... P04908 39539301
    921413 8y3f:H (4.54) BS01 dna N/A GO:0000786 ... P06899 39539301
    921414 8y3f:H (4.54) BS02 dna N/A GO:0000786 ... P06899 39539301
    921415 8y3f:K (4.54) BS01 dna N/A GO:0000786 ... P68431 39539301
    921416 8y3f:L (4.54) BS01 dna N/A GO:0000781 ... P62805 39539301
    921417 8y3f:L (4.54) BS02 dna N/A GO:0000781 ... P62805 39539301
    921418 8y3f:M (4.54) BS01 dna N/A GO:0000786 ... P04908 39539301
    921419 8y3f:M (4.54) BS02 dna N/A GO:0000786 ... P04908 39539301
    921420 8y3f:N (4.54) BS01 dna N/A GO:0000786 ... P06899 39539301
    921421 8y3f:N (4.54) BS02 dna N/A GO:0000786 ... P06899 39539301
    921422 8y3f:O (4.54) BS01 dna N/A GO:0000786 ... P68431 39539301
    921423 8y3f:O (4.54) BS02 dna N/A GO:0000786 ... P68431 39539301
    921424 8y3f:P (4.54) BS01 dna N/A GO:0000781 ... P62805 39539301
    921425 8y3f:P (4.54) BS02 dna N/A GO:0000781 ... P62805 39539301
    921426 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    921427 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    921428 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    921429 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    921430 8y3z:A (2.5) BS01 dna N/A GO:0000062 ... Q9KQU8 N/A
    921431 8y3z:A (2.5) BS02 dna N/A GO:0000062 ... Q9KQU8 N/A
    921432 8y3z:B (2.5) BS01 dna N/A GO:0000062 ... Q9KQU8 N/A
    921433 8y3z:B (2.5) BS02 dna N/A GO:0000062 ... Q9KQU8 N/A
    921434 8y40:A (3.58) BS01 F0U N/A GO:0003151 ... P11716 39428398
    921435 8y40:A (3.58) BS02 ZN N/A GO:0003151 ... P11716 39428398
    921436 8y40:A (3.58) BS03 CA N/A GO:0003151 ... P11716 39428398
    921437 8y40:A (3.58) BS04 ATP N/A GO:0003151 ... P11716 39428398
    921438 8y40:A (3.58) BS05 CFF N/A GO:0003151 ... P11716 39428398
    921439 8y40:B (3.58) BS01 F0U N/A GO:0003151 ... P11716 39428398
    921440 8y40:B (3.58) BS02 ZN N/A GO:0003151 ... P11716 39428398
    921441 8y40:B (3.58) BS03 CA N/A GO:0003151 ... P11716 39428398
    921442 8y40:B (3.58) BS04 ATP N/A GO:0003151 ... P11716 39428398
    921443 8y40:B (3.58) BS05 CFF N/A GO:0003151 ... P11716 39428398
    921444 8y40:C (3.58) BS01 F0U N/A GO:0003151 ... P11716 39428398
    921445 8y40:C (3.58) BS02 ZN N/A GO:0003151 ... P11716 39428398
    921446 8y40:C (3.58) BS03 CA N/A GO:0003151 ... P11716 39428398
    921447 8y40:C (3.58) BS04 ATP N/A GO:0003151 ... P11716 39428398
    921448 8y40:C (3.58) BS05 CFF N/A GO:0003151 ... P11716 39428398
    921449 8y40:D (3.58) BS01 F0U N/A GO:0003151 ... P11716 39428398
    921450 8y40:D (3.58) BS02 ZN N/A GO:0003151 ... P11716 39428398
    921451 8y40:D (3.58) BS03 CA N/A GO:0003151 ... P11716 39428398
    921452 8y40:D (3.58) BS04 ATP N/A GO:0003151 ... P11716 39428398
    921453 8y40:D (3.58) BS05 CFF N/A GO:0003151 ... P11716 39428398
    921454 8y41:A (2.58) BS01 3VV N/A GO:0000062 ... Q9KQU8 N/A
    921455 8y41:A (2.58) BS02 3VV N/A GO:0000062 ... Q9KQU8 N/A
    921456 8y41:D (2.58) BS01 3VV N/A GO:0000062 ... Q9KQU8 N/A
    921457 8y41:D (2.58) BS02 3VV N/A GO:0000062 ... Q9KQU8 N/A
    921458 8y42:A (2.35) BS01 A1D51 N/A GO:0008233 ... P0DTC1 39072488
    921459 8y42:B (2.35) BS01 A1D51 N/A GO:0008233 ... P0DTC1 39072488
    921460 8y42:C (2.35) BS01 A1D51 N/A GO:0008233 ... P0DTC1 39072488
    921461 8y42:D (2.35) BS01 A1D51 N/A GO:0008233 ... P0DTC1 39072488
    921462 8y44:A (1.91) BS01 A1D50 N/A GO:0008233 ... P0DTC1 39072488
    921463 8y44:B (1.91) BS01 A1D50 N/A GO:0008233 ... P0DTC1 39072488
    921464 8y45:A (3.45) BS01 A1LXY N/A GO:0004930 ... P41143 39333070
    921465 8y46:A (1.29) BS01 A1LXA N/A GO:0016491 ... A0AAE4G800 38918500
    921466 8y46:B (1.29) BS01 A1LXB N/A GO:0016491 ... A0AAE4G800 38918500
    921467 8y46:D (1.29) BS01 A1LXA N/A GO:0016491 ... A0AAE4G800 38918500
    921468 8y47:A (2.0) BS01 peptide N/A GO:0003779 ... O48791 N/A
    921469 8y4b:A (1.67) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    921470 8y4b:B (1.67) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    921471 8y4b:C (1.67) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    921472 8y4b:D (1.67) BS01 NAD N/A GO:0016491 ... A0AAE4G800 38918500
    921473 8y4b:D (1.67) BS02 A1LXB N/A GO:0016491 ... A0AAE4G800 38918500
    921474 8y4d:A (1.91) BS01 FHR N/A GO:0008233 ... P0DTD1 N/A
    921475 8y4d:B (1.91) BS01 FHR N/A GO:0008233 ... P0DTD1 N/A
    921476 8y4e:A (2.04) BS01 FHR N/A GO:0008233 ... P0C6U8 N/A
    921477 8y4e:B (2.04) BS01 FHR N/A GO:0008233 ... P0C6U8 N/A
    921478 8y4f:A (1.95) BS01 FHR N/A GO:0008233 ... P0C6X1 N/A
    921479 8y4f:B (1.95) BS01 FHR N/A GO:0008233 ... P0C6X1 N/A
    921480 8y4g:A (1.93) BS01 FHR N/A GO:0008233 ... P0DTD1 40133408
    921481 8y4g:B (1.93) BS01 FHR N/A GO:0008233 ... P0DTD1 40133408
    921482 8y4h:A (1.93) BS01 FHR N/A GO:0008233 ... P0DTD1 40133408
    921483 8y4h:B (1.93) BS01 FHR N/A GO:0008233 ... P0DTD1 40133408
    921484 8y4i:A (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921485 8y4i:A (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921486 8y4i:A (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921487 8y4i:B (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921488 8y4i:B (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921489 8y4i:B (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921490 8y4i:C (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921491 8y4i:C (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921492 8y4i:C (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921493 8y4i:D (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921494 8y4i:D (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921495 8y4i:D (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921496 8y4i:E (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921497 8y4i:E (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921498 8y4i:E (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921499 8y4i:F (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921500 8y4i:F (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921501 8y4i:F (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921502 8y4i:G (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921503 8y4i:G (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921504 8y4i:G (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921505 8y4i:H (1.935) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921506 8y4i:H (1.935) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921507 8y4i:H (1.935) BS03 A1LXF N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921508 8y4j:A (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    921509 8y4j:C (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    921510 8y4j:D (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    921511 8y4k:A (2.5) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921512 8y4k:A (2.5) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921513 8y4k:A (2.5) BS03 A1LXG N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921514 8y4k:B (2.5) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921515 8y4k:B (2.5) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921516 8y4k:B (2.5) BS03 A1LXG N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921517 8y4m:A (2.169) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921518 8y4m:A (2.169) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921519 8y4m:A (2.169) BS03 A1LXH N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921520 8y4m:B (2.169) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921521 8y4m:B (2.169) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921522 8y4m:B (2.169) BS03 A1LXH N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921523 8y4m:C (2.169) BS01 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921524 8y4m:C (2.169) BS02 ZN N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921525 8y4m:C (2.169) BS03 A1LXH N/A GO:0008800 ... A0A0F7KYQ8 N/A
    921526 8y4u:A (2.4) BS01 FE ? N/A Q6ES21 38401306
    921527 8y4w:A (3.16) BS01 SLB N/A GO:0005886 ... Q8RDN8 39912804
    921528 8y52:R (2.9) BS01 peptide N/A GO:0004930 ... P32247 39024101
    921529 8y53:R (2.93) BS01 A1D54 N/A GO:0004930 ... P32247 39024101
    921530 8y55:A (1.86) BS01 A1D52 N/A GO:0005125 ... P43490 40486861
    921531 8y55:B (1.86) BS01 A1D52 N/A GO:0005125 ... P43490 40486861
    921532 8y56:R (2.83) BS01 CLR N/A GO:0005765 ... Q7Z3F1 39824976
    921533 8y56:R (2.83) BS02 CLR N/A GO:0005765 ... Q7Z3F1 39824976
    921534 8y56:R (2.83) BS03 CLR N/A GO:0005765 ... Q7Z3F1 39824976
    921535 8y56:R (2.83) BS04 CLR N/A GO:0005765 ... Q7Z3F1 39824976
    921536 8y56:R (2.83) BS05 CLR N/A GO:0005765 ... Q7Z3F1 39824976
    921537 8y56:R (2.83) BS06 DKB N/A GO:0005765 ... Q7Z3F1 39824976
    921538 8y57:A (3.2) BS01 B41 N/A N/A N/A 39208641
    921539 8y57:B (3.2) BS01 B41 N/A N/A N/A 39208641
    921540 8y58:A (1.6) BS01 PMZ N/A N/A P19474 39488207
    921541 8y59:A (1.89) BS01 A1D5Y N/A N/A P19474 39488207
    921542 8y5b:A (1.74) BS01 A1D5Z N/A N/A P19474 39488207
    921543 8y5h:E (3.1) BS01 SPD N/A GO:0015846 ... P0AFK9 39303029
    921544 8y5i:A (3.0) BS01 ATP N/A GO:0000166 ... P69874 39303029
    921545 8y5i:A (3.0) BS02 ATP N/A GO:0000166 ... P69874 39303029
    921546 8y5i:D (3.0) BS01 ATP N/A GO:0000166 ... P69874 39303029
    921547 8y5i:D (3.0) BS02 ATP N/A GO:0000166 ... P69874 39303029
    921548 8y5k:0 (6.9) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    921549 8y5k:0 (6.9) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    921550 8y5k:0 (6.9) BS03 GDP N/A GO:0003746 ... P0A6M8 N/A
    921551 8y5k:A (6.9) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    921552 8y5k:A (6.9) BS02 rna N/A GO:0002181 ... P0A7M9 N/A
    921553 8y5k:B (6.9) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    921554 8y5k:B1 (6.9) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    921555 8y5k:B1 (6.9) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    921556 8y5k:B1 (6.9) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    921557 8y5k:B1 (6.9) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    921558 8y5k:B2 (6.9) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    921559 8y5k:B2 (6.9) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    921560 8y5k:B2 (6.9) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    921561 8y5k:C (6.9) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    921562 8y5k:D (6.9) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    921563 8y5k:E (6.9) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    921564 8y5k:F (6.9) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    921565 8y5k:G (6.9) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    921566 8y5k:H (6.9) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    921567 8y5k:I (6.9) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    921568 8y5k:J (6.9) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    921569 8y5k:K (6.9) BS01 rna N/A GO:0002181 ... P02358 N/A
    921570 8y5k:L (6.9) BS01 rna N/A GO:0000028 ... P02359 N/A
    921571 8y5k:M (6.9) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    921572 8y5k:N (6.9) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    921573 8y5k:N (6.9) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    921574 8y5k:O (6.9) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    921575 8y5k:P (6.9) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    921576 8y5k:Q (6.9) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    921577 8y5k:R (6.9) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    921578 8y5k:S (6.9) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    921579 8y5k:T (6.9) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    921580 8y5k:T (6.9) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    921581 8y5k:U (6.9) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    921582 8y5k:V (6.9) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    921583 8y5k:W (6.9) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    921584 8y5k:X (6.9) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    921585 8y5k:Y (6.9) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    921586 8y5k:Z (6.9) BS01 rna N/A GO:0000028 ... P68679 N/A
    921587 8y5k:a (6.9) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    921588 8y5k:a (6.9) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    921589 8y5k:b (6.9) BS01 rna N/A GO:0000027 ... P60422 N/A
    921590 8y5k:b (6.9) BS02 rna N/A GO:0000027 ... P60422 N/A
    921591 8y5k:c (6.9) BS01 rna N/A GO:0000027 ... P60438 N/A
    921592 8y5k:d (6.9) BS01 rna N/A GO:0001070 ... P60723 N/A
    921593 8y5k:e (6.9) BS01 rna N/A GO:0000027 ... P62399 N/A
    921594 8y5k:e (6.9) BS02 rna N/A GO:0000027 ... P62399 N/A
    921595 8y5k:f (6.9) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    921596 8y5k:g (6.9) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    921597 8y5k:i (6.9) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    921598 8y5k:j (6.9) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    921599 8y5k:k (6.9) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    921600 8y5k:k (6.9) BS02 rna N/A GO:0002181 ... P0ADY3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).