SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921601 8y5k:l (6.9) BS01 rna N/A GO:0002181 ... P02413 N/A
    921602 8y5k:m (6.9) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    921603 8y5k:m (6.9) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    921604 8y5k:n (6.9) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    921605 8y5k:o (6.9) BS01 rna N/A GO:0002181 ... P0C018 N/A
    921606 8y5k:o (6.9) BS02 rna N/A GO:0002181 ... P0C018 N/A
    921607 8y5k:p (6.9) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    921608 8y5k:p (6.9) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    921609 8y5k:q (6.9) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    921610 8y5k:r (6.9) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    921611 8y5k:s (6.9) BS01 rna N/A GO:0002181 ... P61175 N/A
    921612 8y5k:t (6.9) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    921613 8y5k:u (6.9) BS01 rna N/A GO:0000027 ... P60624 N/A
    921614 8y5k:v (6.9) BS01 rna N/A GO:0000027 ... P68919 N/A
    921615 8y5k:v (6.9) BS02 rna N/A GO:0000027 ... P68919 N/A
    921616 8y5k:w (6.9) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    921617 8y5k:w (6.9) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    921618 8y5k:x (6.9) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    921619 8y5k:y (6.9) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    921620 8y5k:z (6.9) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    921621 8y5l:A (3.7) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    921622 8y5l:B (3.7) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    921623 8y5l:B1 (3.7) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    921624 8y5l:B1 (3.7) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    921625 8y5l:B1 (3.7) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    921626 8y5l:B1 (3.7) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    921627 8y5l:B2 (3.7) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    921628 8y5l:B2 (3.7) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    921629 8y5l:B2 (3.7) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    921630 8y5l:C (3.7) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    921631 8y5l:D (3.7) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    921632 8y5l:E (3.7) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    921633 8y5l:F (3.7) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    921634 8y5l:G (3.7) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    921635 8y5l:H (3.7) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    921636 8y5l:H (3.7) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    921637 8y5l:I (3.7) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    921638 8y5l:I (3.7) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    921639 8y5l:J (3.7) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    921640 8y5l:J (3.7) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    921641 8y5l:K (3.7) BS01 rna N/A GO:0002181 ... P02358 N/A
    921642 8y5l:L (3.7) BS01 rna N/A GO:0000028 ... P02359 N/A
    921643 8y5l:L (3.7) BS02 rna N/A GO:0000028 ... P02359 N/A
    921644 8y5l:M (3.7) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    921645 8y5l:N (3.7) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    921646 8y5l:N (3.7) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    921647 8y5l:O (3.7) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    921648 8y5l:P (3.7) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    921649 8y5l:Q (3.7) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    921650 8y5l:Q (3.7) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    921651 8y5l:R (3.7) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    921652 8y5l:S (3.7) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    921653 8y5l:T (3.7) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    921654 8y5l:T (3.7) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    921655 8y5l:U (3.7) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    921656 8y5l:V (3.7) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    921657 8y5l:W (3.7) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    921658 8y5l:X (3.7) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    921659 8y5l:Y (3.7) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    921660 8y5l:Z (3.7) BS01 rna N/A GO:0000028 ... P68679 N/A
    921661 8y5l:b (3.7) BS01 rna N/A GO:0000027 ... P60422 N/A
    921662 8y5l:c (3.7) BS01 rna N/A GO:0000027 ... P60438 N/A
    921663 8y5l:d (3.7) BS01 rna N/A GO:0001070 ... P60723 N/A
    921664 8y5l:e (3.7) BS01 rna N/A GO:0000027 ... P62399 N/A
    921665 8y5l:e (3.7) BS02 rna N/A GO:0000027 ... P62399 N/A
    921666 8y5l:e (3.7) BS03 rna N/A GO:0000027 ... P62399 N/A
    921667 8y5l:f (3.7) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    921668 8y5l:g (3.7) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    921669 8y5l:i (3.7) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    921670 8y5l:j (3.7) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    921671 8y5l:k (3.7) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    921672 8y5l:k (3.7) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    921673 8y5l:l (3.7) BS01 rna N/A GO:0002181 ... P02413 N/A
    921674 8y5l:m (3.7) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    921675 8y5l:m (3.7) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    921676 8y5l:m (3.7) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    921677 8y5l:n (3.7) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    921678 8y5l:o (3.7) BS01 rna N/A GO:0002181 ... P0C018 N/A
    921679 8y5l:o (3.7) BS02 rna N/A GO:0002181 ... P0C018 N/A
    921680 8y5l:p (3.7) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    921681 8y5l:p (3.7) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    921682 8y5l:q (3.7) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    921683 8y5l:r (3.7) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    921684 8y5l:s (3.7) BS01 rna N/A GO:0002181 ... P61175 N/A
    921685 8y5l:t (3.7) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    921686 8y5l:u (3.7) BS01 rna N/A GO:0000027 ... P60624 N/A
    921687 8y5l:v (3.7) BS01 rna N/A GO:0000027 ... P68919 N/A
    921688 8y5l:w (3.7) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    921689 8y5l:w (3.7) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    921690 8y5l:x (3.7) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    921691 8y5l:y (3.7) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    921692 8y5l:z (3.7) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    921693 8y5m:0 (4.5) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    921694 8y5m:0 (4.5) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    921695 8y5m:0 (4.5) BS03 GDP N/A GO:0003746 ... P0A6M8 N/A
    921696 8y5m:A (4.5) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    921697 8y5m:A (4.5) BS02 rna N/A GO:0002181 ... P0A7M9 N/A
    921698 8y5m:B (4.5) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    921699 8y5m:B1 (4.5) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    921700 8y5m:B1 (4.5) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    921701 8y5m:B1 (4.5) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    921702 8y5m:B1 (4.5) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    921703 8y5m:B2 (4.5) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    921704 8y5m:B2 (4.5) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    921705 8y5m:B2 (4.5) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    921706 8y5m:C (4.5) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    921707 8y5m:D (4.5) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    921708 8y5m:E (4.5) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    921709 8y5m:F (4.5) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    921710 8y5m:G (4.5) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    921711 8y5m:H (4.5) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    921712 8y5m:H (4.5) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    921713 8y5m:I (4.5) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    921714 8y5m:J (4.5) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    921715 8y5m:J (4.5) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    921716 8y5m:K (4.5) BS01 rna N/A GO:0002181 ... P02358 N/A
    921717 8y5m:L (4.5) BS01 rna N/A GO:0000028 ... P02359 N/A
    921718 8y5m:M (4.5) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    921719 8y5m:N (4.5) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    921720 8y5m:N (4.5) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    921721 8y5m:O (4.5) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    921722 8y5m:P (4.5) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    921723 8y5m:Q (4.5) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    921724 8y5m:R (4.5) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    921725 8y5m:S (4.5) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    921726 8y5m:T (4.5) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    921727 8y5m:T (4.5) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    921728 8y5m:U (4.5) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    921729 8y5m:V (4.5) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    921730 8y5m:W (4.5) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    921731 8y5m:X (4.5) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    921732 8y5m:Y (4.5) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    921733 8y5m:Z (4.5) BS01 rna N/A GO:0000028 ... P68679 N/A
    921734 8y5m:a (4.5) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    921735 8y5m:a (4.5) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    921736 8y5m:b (4.5) BS01 rna N/A GO:0000027 ... P60422 N/A
    921737 8y5m:b (4.5) BS02 rna N/A GO:0000027 ... P60422 N/A
    921738 8y5m:c (4.5) BS01 rna N/A GO:0000027 ... P60438 N/A
    921739 8y5m:d (4.5) BS01 rna N/A GO:0001070 ... P60723 N/A
    921740 8y5m:e (4.5) BS01 rna N/A GO:0000027 ... P62399 N/A
    921741 8y5m:e (4.5) BS02 rna N/A GO:0000027 ... P62399 N/A
    921742 8y5m:f (4.5) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    921743 8y5m:g (4.5) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    921744 8y5m:i (4.5) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    921745 8y5m:j (4.5) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    921746 8y5m:k (4.5) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    921747 8y5m:k (4.5) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    921748 8y5m:l (4.5) BS01 rna N/A GO:0002181 ... P02413 N/A
    921749 8y5m:m (4.5) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    921750 8y5m:m (4.5) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    921751 8y5m:n (4.5) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    921752 8y5m:o (4.5) BS01 rna N/A GO:0002181 ... P0C018 N/A
    921753 8y5m:o (4.5) BS02 rna N/A GO:0002181 ... P0C018 N/A
    921754 8y5m:p (4.5) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    921755 8y5m:p (4.5) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    921756 8y5m:q (4.5) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    921757 8y5m:r (4.5) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    921758 8y5m:s (4.5) BS01 rna N/A GO:0002181 ... P61175 N/A
    921759 8y5m:t (4.5) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    921760 8y5m:u (4.5) BS01 rna N/A GO:0000027 ... P60624 N/A
    921761 8y5m:v (4.5) BS01 rna N/A GO:0000027 ... P68919 N/A
    921762 8y5m:v (4.5) BS02 rna N/A GO:0000027 ... P68919 N/A
    921763 8y5m:w (4.5) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    921764 8y5m:w (4.5) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    921765 8y5m:x (4.5) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    921766 8y5m:y (4.5) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    921767 8y5m:z (4.5) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    921768 8y5n:0 (4.5) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    921769 8y5n:0 (4.5) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    921770 8y5n:0 (4.5) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    921771 8y5n:0 (4.5) BS04 GDP N/A GO:0003746 ... P0A6M8 N/A
    921772 8y5n:A (4.5) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    921773 8y5n:B (4.5) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    921774 8y5n:B1 (4.5) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    921775 8y5n:B1 (4.5) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    921776 8y5n:B1 (4.5) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    921777 8y5n:B2 (4.5) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    921778 8y5n:B2 (4.5) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    921779 8y5n:B2 (4.5) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    921780 8y5n:C (4.5) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    921781 8y5n:D (4.5) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    921782 8y5n:E (4.5) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    921783 8y5n:F (4.5) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    921784 8y5n:G (4.5) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    921785 8y5n:H (4.5) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    921786 8y5n:I (4.5) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    921787 8y5n:J (4.5) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    921788 8y5n:J (4.5) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    921789 8y5n:K (4.5) BS01 rna N/A GO:0002181 ... P02358 N/A
    921790 8y5n:L (4.5) BS01 rna N/A GO:0000028 ... P02359 N/A
    921791 8y5n:M (4.5) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    921792 8y5n:N (4.5) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    921793 8y5n:N (4.5) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    921794 8y5n:O (4.5) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    921795 8y5n:P (4.5) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    921796 8y5n:Q (4.5) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    921797 8y5n:R (4.5) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    921798 8y5n:S (4.5) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    921799 8y5n:T (4.5) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    921800 8y5n:T (4.5) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).