SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    921801 8y5n:U (4.5) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    921802 8y5n:V (4.5) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    921803 8y5n:W (4.5) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    921804 8y5n:X (4.5) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    921805 8y5n:Y (4.5) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    921806 8y5n:Z (4.5) BS01 rna N/A GO:0000028 ... P68679 N/A
    921807 8y5n:a (4.5) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    921808 8y5n:a (4.5) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    921809 8y5n:b (4.5) BS01 rna N/A GO:0000027 ... P60422 N/A
    921810 8y5n:b (4.5) BS02 rna N/A GO:0000027 ... P60422 N/A
    921811 8y5n:c (4.5) BS01 rna N/A GO:0000027 ... P60438 N/A
    921812 8y5n:d (4.5) BS01 rna N/A GO:0001070 ... P60723 N/A
    921813 8y5n:e (4.5) BS01 rna N/A GO:0000027 ... P62399 N/A
    921814 8y5n:e (4.5) BS02 rna N/A GO:0000027 ... P62399 N/A
    921815 8y5n:f (4.5) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    921816 8y5n:g (4.5) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    921817 8y5n:i (4.5) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    921818 8y5n:j (4.5) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    921819 8y5n:k (4.5) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    921820 8y5n:k (4.5) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    921821 8y5n:l (4.5) BS01 rna N/A GO:0002181 ... P02413 N/A
    921822 8y5n:m (4.5) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    921823 8y5n:m (4.5) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    921824 8y5n:m (4.5) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    921825 8y5n:n (4.5) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    921826 8y5n:o (4.5) BS01 rna N/A GO:0002181 ... P0C018 N/A
    921827 8y5n:o (4.5) BS02 rna N/A GO:0002181 ... P0C018 N/A
    921828 8y5n:p (4.5) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    921829 8y5n:p (4.5) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    921830 8y5n:q (4.5) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    921831 8y5n:r (4.5) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    921832 8y5n:s (4.5) BS01 rna N/A GO:0002181 ... P61175 N/A
    921833 8y5n:t (4.5) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    921834 8y5n:u (4.5) BS01 rna N/A GO:0000027 ... P60624 N/A
    921835 8y5n:v (4.5) BS01 rna N/A GO:0000027 ... P68919 N/A
    921836 8y5n:v (4.5) BS02 rna N/A GO:0000027 ... P68919 N/A
    921837 8y5n:w (4.5) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    921838 8y5n:w (4.5) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    921839 8y5n:x (4.5) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    921840 8y5n:y (4.5) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    921841 8y5n:z (4.5) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    921842 8y5n:z (4.5) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    921843 8y5o:0 (4.2) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    921844 8y5o:0 (4.2) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    921845 8y5o:0 (4.2) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    921846 8y5o:0 (4.2) BS04 GDP N/A GO:0003746 ... P0A6M8 N/A
    921847 8y5o:A (4.2) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    921848 8y5o:B (4.2) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    921849 8y5o:B1 (4.2) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    921850 8y5o:B1 (4.2) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    921851 8y5o:B1 (4.2) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    921852 8y5o:B1 (4.2) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    921853 8y5o:B2 (4.2) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    921854 8y5o:B2 (4.2) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    921855 8y5o:B2 (4.2) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    921856 8y5o:C (4.2) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    921857 8y5o:D (4.2) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    921858 8y5o:E (4.2) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    921859 8y5o:F (4.2) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    921860 8y5o:G (4.2) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    921861 8y5o:H (4.2) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    921862 8y5o:H (4.2) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    921863 8y5o:I (4.2) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    921864 8y5o:I (4.2) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    921865 8y5o:J (4.2) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    921866 8y5o:J (4.2) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    921867 8y5o:K (4.2) BS01 rna N/A GO:0002181 ... P02358 N/A
    921868 8y5o:L (4.2) BS01 rna N/A GO:0000028 ... P02359 N/A
    921869 8y5o:M (4.2) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    921870 8y5o:N (4.2) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    921871 8y5o:N (4.2) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    921872 8y5o:O (4.2) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    921873 8y5o:P (4.2) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    921874 8y5o:Q (4.2) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    921875 8y5o:R (4.2) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    921876 8y5o:S (4.2) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    921877 8y5o:T (4.2) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    921878 8y5o:T (4.2) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    921879 8y5o:U (4.2) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    921880 8y5o:V (4.2) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    921881 8y5o:W (4.2) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    921882 8y5o:X (4.2) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    921883 8y5o:Y (4.2) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    921884 8y5o:Z (4.2) BS01 rna N/A GO:0000028 ... P68679 N/A
    921885 8y5o:a (4.2) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    921886 8y5o:a (4.2) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    921887 8y5o:b (4.2) BS01 rna N/A GO:0000027 ... P60422 N/A
    921888 8y5o:b (4.2) BS02 rna N/A GO:0000027 ... P60422 N/A
    921889 8y5o:c (4.2) BS01 rna N/A GO:0000027 ... P60438 N/A
    921890 8y5o:d (4.2) BS01 rna N/A GO:0001070 ... P60723 N/A
    921891 8y5o:e (4.2) BS01 rna N/A GO:0000027 ... P62399 N/A
    921892 8y5o:e (4.2) BS02 rna N/A GO:0000027 ... P62399 N/A
    921893 8y5o:f (4.2) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    921894 8y5o:g (4.2) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    921895 8y5o:i (4.2) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    921896 8y5o:j (4.2) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    921897 8y5o:k (4.2) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    921898 8y5o:k (4.2) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    921899 8y5o:l (4.2) BS01 rna N/A GO:0002181 ... P02413 N/A
    921900 8y5o:m (4.2) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    921901 8y5o:m (4.2) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    921902 8y5o:m (4.2) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    921903 8y5o:n (4.2) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    921904 8y5o:o (4.2) BS01 rna N/A GO:0002181 ... P0C018 N/A
    921905 8y5o:o (4.2) BS02 rna N/A GO:0002181 ... P0C018 N/A
    921906 8y5o:p (4.2) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    921907 8y5o:p (4.2) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    921908 8y5o:q (4.2) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    921909 8y5o:r (4.2) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    921910 8y5o:s (4.2) BS01 rna N/A GO:0002181 ... P61175 N/A
    921911 8y5o:t (4.2) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    921912 8y5o:u (4.2) BS01 rna N/A GO:0000027 ... P60624 N/A
    921913 8y5o:v (4.2) BS01 rna N/A GO:0000027 ... P68919 N/A
    921914 8y5o:v (4.2) BS02 rna N/A GO:0000027 ... P68919 N/A
    921915 8y5o:w (4.2) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    921916 8y5o:w (4.2) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    921917 8y5o:x (4.2) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    921918 8y5o:y (4.2) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    921919 8y5o:z (4.2) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    921920 8y5o:z (4.2) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    921921 8y5p:0 (6.5) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    921922 8y5p:0 (6.5) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    921923 8y5p:0 (6.5) BS03 GDP N/A GO:0003746 ... P0A6M8 N/A
    921924 8y5p:A (6.5) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    921925 8y5p:B (6.5) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    921926 8y5p:B1 (6.5) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    921927 8y5p:B1 (6.5) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    921928 8y5p:B1 (6.5) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    921929 8y5p:B1 (6.5) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    921930 8y5p:B2 (6.5) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    921931 8y5p:B2 (6.5) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    921932 8y5p:B2 (6.5) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    921933 8y5p:C (6.5) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    921934 8y5p:D (6.5) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    921935 8y5p:E (6.5) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    921936 8y5p:F (6.5) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    921937 8y5p:G (6.5) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    921938 8y5p:H (6.5) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    921939 8y5p:H (6.5) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    921940 8y5p:I (6.5) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    921941 8y5p:I (6.5) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    921942 8y5p:J (6.5) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    921943 8y5p:J (6.5) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    921944 8y5p:K (6.5) BS01 rna N/A GO:0002181 ... P02358 N/A
    921945 8y5p:L (6.5) BS01 rna N/A GO:0000028 ... P02359 N/A
    921946 8y5p:M (6.5) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    921947 8y5p:N (6.5) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    921948 8y5p:N (6.5) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    921949 8y5p:O (6.5) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    921950 8y5p:P (6.5) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    921951 8y5p:Q (6.5) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    921952 8y5p:R (6.5) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    921953 8y5p:S (6.5) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    921954 8y5p:T (6.5) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    921955 8y5p:T (6.5) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    921956 8y5p:U (6.5) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    921957 8y5p:V (6.5) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    921958 8y5p:W (6.5) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    921959 8y5p:X (6.5) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    921960 8y5p:Y (6.5) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    921961 8y5p:Z (6.5) BS01 rna N/A GO:0000028 ... P68679 N/A
    921962 8y5p:a (6.5) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    921963 8y5p:a (6.5) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    921964 8y5p:b (6.5) BS01 rna N/A GO:0000027 ... P60422 N/A
    921965 8y5p:b (6.5) BS02 rna N/A GO:0000027 ... P60422 N/A
    921966 8y5p:c (6.5) BS01 rna N/A GO:0000027 ... P60438 N/A
    921967 8y5p:d (6.5) BS01 rna N/A GO:0001070 ... P60723 N/A
    921968 8y5p:e (6.5) BS01 rna N/A GO:0000027 ... P62399 N/A
    921969 8y5p:e (6.5) BS02 rna N/A GO:0000027 ... P62399 N/A
    921970 8y5p:f (6.5) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    921971 8y5p:g (6.5) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    921972 8y5p:i (6.5) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    921973 8y5p:j (6.5) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    921974 8y5p:k (6.5) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    921975 8y5p:k (6.5) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    921976 8y5p:l (6.5) BS01 rna N/A GO:0002181 ... P02413 N/A
    921977 8y5p:m (6.5) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    921978 8y5p:m (6.5) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    921979 8y5p:n (6.5) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    921980 8y5p:o (6.5) BS01 rna N/A GO:0002181 ... P0C018 N/A
    921981 8y5p:o (6.5) BS02 rna N/A GO:0002181 ... P0C018 N/A
    921982 8y5p:p (6.5) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    921983 8y5p:p (6.5) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    921984 8y5p:q (6.5) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    921985 8y5p:r (6.5) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    921986 8y5p:s (6.5) BS01 rna N/A GO:0002181 ... P61175 N/A
    921987 8y5p:t (6.5) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    921988 8y5p:u (6.5) BS01 rna N/A GO:0000027 ... P60624 N/A
    921989 8y5p:v (6.5) BS01 rna N/A GO:0000027 ... P68919 N/A
    921990 8y5p:v (6.5) BS02 rna N/A GO:0000027 ... P68919 N/A
    921991 8y5p:w (6.5) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    921992 8y5p:w (6.5) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    921993 8y5p:x (6.5) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    921994 8y5p:y (6.5) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    921995 8y5p:z (6.5) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    921996 8y5p:z (6.5) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    921997 8y5q:0 (3.9) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    921998 8y5q:0 (3.9) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    921999 8y5q:A (3.9) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    922000 8y5q:B (3.9) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).