SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    922001 9bct:B (2.5) BS03 rna N/A GO:0000428 ... Q5JE32 39322680
    922002 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 39322680
    922003 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 39322680
    922004 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 39322680
    922005 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 39322680
    922006 9bct:I (2.5) BS01 ZN N/A GO:0000428 ... Q5JIY5 39322680
    922007 9bct:J (2.5) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    922008 9bct:J (2.5) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    922009 9bct:M (2.5) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    922010 9bct:M (2.5) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    922011 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 39322680
    922012 9bct:P (2.5) BS01 ZN N/A GO:0000428 ... Q5JDM8 39322680
    922013 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 39322680
    922014 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 39322680
    922015 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 39322680
    922016 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 39322680
    922017 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 39322680
    922018 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 39322680
    922019 9bcu:B (2.2) BS01 dna N/A GO:0000428 ... Q5JE32 39322680
    922020 9bcu:B (2.2) BS02 dna N/A GO:0000428 ... Q5JE32 39322680
    922021 9bcu:B (2.2) BS03 rna N/A GO:0000428 ... Q5JE32 39322680
    922022 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 39322680
    922023 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 39322680
    922024 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 39322680
    922025 9bcu:J (2.2) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    922026 9bcu:J (2.2) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    922027 9bcu:M (2.2) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    922028 9bcu:M (2.2) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    922029 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 39322680
    922030 9bcu:P (2.2) BS01 ZN N/A GO:0000428 ... Q5JDM8 39322680
    922031 9bcv:A (3.2) BS01 G2P N/A GO:0001653 ... P16066 39543315
    922032 9bcv:B (3.2) BS01 G2P N/A GO:0001653 ... P16066 39543315
    922033 9bcx:2 (6.1) BS01 dna N/A N/A P29469 39747125
    922034 9bcx:4 (6.1) BS01 dna N/A N/A P30665 39747125
    922035 9bcx:6 (6.1) BS01 dna N/A N/A P53091 39747125
    922036 9bcx:6 (6.1) BS02 dna N/A N/A P53091 39747125
    922037 9bcx:B (6.1) BS01 ATP N/A N/A P54784 39747125
    922038 9bcx:C (6.1) BS01 dna N/A N/A P32833 39747125
    922039 9bcx:E (6.1) BS01 ATP N/A N/A P54791 39747125
    922040 9bcx:F (6.1) BS01 dna N/A N/A P50874 39747125
    922041 9bcx:F (6.1) BS02 ATP N/A N/A P50874 39747125
    922042 9bcx:F (6.1) BS03 ATP N/A N/A P50874 39747125
    922043 9bcx:F (6.1) BS04 MG N/A N/A P50874 39747125
    922044 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0004435 ... Q2VRL0 N/A
    922045 9bd2:C (2.24) BS01 A1AL3 N/A N/A P43357 39190582
    922046 9bd3:A (2.58) BS01 peptide ? N/A P43358 38907034
    922047 9bd3:C (2.58) BS01 peptide ? N/A P43358 38907034
    922048 9bd5:A (2.7) BS01 CU N/A N/A A0A6N2GR66 39640860
    922049 9bd5:A (2.7) BS02 CU N/A N/A A0A6N2GR66 39640860
    922050 9bd5:A (2.7) BS03 CU N/A N/A A0A6N2GR66 39640860
    922051 9bd5:A (2.7) BS04 CU N/A N/A A0A6N2GR66 39640860
    922052 9bd5:B (2.7) BS01 CU N/A N/A A0A6N2GR66 39640860
    922053 9bd5:B (2.7) BS02 CU N/A N/A A0A6N2GR66 39640860
    922054 9bd5:B (2.7) BS03 CU N/A N/A A0A6N2GR66 39640860
    922055 9bd5:B (2.7) BS04 CU N/A N/A A0A6N2GR66 39640860
    922056 9bdc:A (2.54) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    922057 9bdc:B (2.54) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    922058 9bdc:E (2.54) BS01 dna N/A GO:0000175 ... O00411 39164235
    922059 9bdc:E (2.54) BS02 rna N/A GO:0000175 ... O00411 39164235
    922060 9bdc:E (2.54) BS03 dna N/A GO:0000175 ... O00411 39164235
    922061 9bdd:A (2.86) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    922062 9bdd:B (2.86) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    922063 9bdd:E (2.86) BS01 dna N/A GO:0000175 ... O00411 39164235
    922064 9bdd:E (2.86) BS02 rna N/A GO:0000175 ... O00411 39164235
    922065 9bdd:E (2.86) BS03 dna N/A GO:0000175 ... O00411 39164235
    922066 9bdd:E (2.86) BS04 APC N/A GO:0000175 ... O00411 39164235
    922067 9bde:R (4.18) BS01 CA N/A N/A P01130 39663455
    922068 9bde:R (4.18) BS02 CA N/A N/A P01130 39663455
    922069 9bde:R (4.18) BS03 CA N/A N/A P01130 39663455
    922070 9bde:R (4.18) BS04 CA N/A N/A P01130 39663455
    922071 9bde:R (4.18) BS05 CA N/A N/A P01130 39663455
    922072 9bde:R (4.18) BS06 CA N/A N/A P01130 39663455
    922073 9bde:R (4.18) BS07 CA N/A N/A P01130 39663455
    922074 9bdg:F (3.01) BS01 MAN N/A N/A N/A N/A
    922075 9bdj:A (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    922076 9bdj:A (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    922077 9bdj:B (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    922078 9bdj:B (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    922079 9bdj:C (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    922080 9bdj:C (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    922081 9bdj:D (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    922082 9bdj:D (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    922083 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    922084 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    922085 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    922086 9bdl:AL04 (2.8) BS01 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    922087 9bdl:AL04 (2.8) BS02 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    922088 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    922089 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    922090 9bdl:AL06 (2.8) BS01 rna N/A GO:0003735 ... G1SKF7 38718836
    922091 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    922092 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    922093 9bdl:AL08 (2.8) BS01 rna N/A GO:0003723 ... G1STW0 38718836
    922094 9bdl:AL08 (2.8) BS02 rna N/A GO:0003723 ... G1STW0 38718836
    922095 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    922096 9bdl:AL10 (2.8) BS01 rna N/A GO:0003735 ... B7NZQ2 38718836
    922097 9bdl:AL10 (2.8) BS02 rna N/A GO:0003735 ... B7NZQ2 38718836
    922098 9bdl:AL10 (2.8) BS03 rna N/A GO:0003735 ... B7NZQ2 38718836
    922099 9bdl:AL11 (2.8) BS01 rna N/A GO:0003735 ... G1TUB8 38718836
    922100 9bdl:AL11 (2.8) BS02 rna N/A GO:0003735 ... G1TUB8 38718836
    922101 9bdl:AL11 (2.8) BS03 rna N/A GO:0003735 ... G1TUB8 38718836
    922102 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    922103 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    922104 9bdl:AL14 (2.8) BS01 rna N/A GO:0003723 ... G1SZ12 38718836
    922105 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    922106 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    922107 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    922108 9bdl:AL17 (2.8) BS01 rna N/A GO:0003735 ... G1SCJ6 38718836
    922109 9bdl:AL17 (2.8) BS02 rna N/A GO:0003735 ... G1SCJ6 38718836
    922110 9bdl:AL18 (2.8) BS01 rna N/A GO:0003723 ... G1TFE0 38718836
    922111 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    922112 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    922113 9bdl:AL20 (2.8) BS01 rna N/A GO:0003735 ... G1TTY7 38718836
    922114 9bdl:AL20 (2.8) BS02 rna N/A GO:0003735 ... G1TTY7 38718836
    922115 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    922116 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    922117 9bdl:AL22 (2.8) BS01 rna N/A GO:0003735 ... G1TSG1 38718836
    922118 9bdl:AL23 (2.8) BS01 rna N/A GO:0003735 ... G1T6D1 38718836
    922119 9bdl:AL24 (2.8) BS01 rna N/A GO:0003735 ... G1SE28 38718836
    922120 9bdl:AL25 (2.8) BS01 rna N/A GO:0003735 ... G1SE76 38718836
    922121 9bdl:AL25 (2.8) BS02 rna N/A GO:0003735 ... G1SE76 38718836
    922122 9bdl:AL26 (2.8) BS01 rna N/A GO:0003723 ... G1SQH0 38718836
    922123 9bdl:AL26 (2.8) BS02 rna N/A GO:0003723 ... G1SQH0 38718836
    922124 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    922125 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    922126 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    922127 9bdl:AL30 (2.8) BS01 rna N/A GO:0003723 ... G1TDL2 38718836
    922128 9bdl:AL31 (2.8) BS01 rna N/A GO:0003735 ... G1SHG0 38718836
    922129 9bdl:AL32 (2.8) BS01 rna N/A GO:0003735 ... G1TUN8 38718836
    922130 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    922131 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    922132 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    922133 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    922134 9bdl:AL36 (2.8) BS01 rna N/A GO:0003735 ... G1TTQ5 38718836
    922135 9bdl:AL37 (2.8) BS01 rna N/A GO:0003735 ... U3KPD5 38718836
    922136 9bdl:AL37 (2.8) BS02 rna N/A GO:0003735 ... U3KPD5 38718836
    922137 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    922138 9bdl:AL39 (2.8) BS01 rna N/A GO:0003735 ... G1TTN1 38718836
    922139 9bdl:AL39 (2.8) BS02 rna N/A GO:0003735 ... G1TTN1 38718836
    922140 9bdl:AL40 (2.8) BS01 rna N/A GO:0003735 ... P0DXC2 38718836
    922141 9bdl:AL42 (2.8) BS01 rna N/A GO:0003735 ... A0A5F9D391 38718836
    922142 9bdl:AL42 (2.8) BS02 rna N/A GO:0003735 ... A0A5F9D391 38718836
    922143 9bdl:AL42 (2.8) BS03 rna N/A GO:0003735 ... A0A5F9D391 38718836
    922144 9bdl:AL43 (2.8) BS01 rna N/A GO:0003735 ... G1SY53 38718836
    922145 9bdl:ALNW (2.8) BS01 rna N/A GO:0003735 ... G1U7L1 38718836
    922146 9bdl:ANG (2.8) BS01 rna N/A GO:0003676 ... P03950 38718836
    922147 9bdl:ANG (2.8) BS02 rna N/A GO:0003676 ... P03950 38718836
    922148 9bdl:ANG (2.8) BS03 rna N/A GO:0003676 ... P03950 38718836
    922149 9bdl:ANG (2.8) BS04 rna N/A GO:0003676 ... P03950 38718836
    922150 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    922151 9bdl:AS00 (2.8) BS01 rna N/A GO:0003735 ... G1TJH8 38718836
    922152 9bdl:AS01 (2.8) BS01 rna N/A GO:0003735 ... G1SS70 38718836
    922153 9bdl:AS02 (2.8) BS01 rna N/A GO:0003723 ... O18789 38718836
    922154 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    922155 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    922156 9bdl:AS05 (2.8) BS01 rna N/A GO:0003723 ... G1TFM5 38718836
    922157 9bdl:AS06 (2.8) BS01 rna N/A GO:0003735 ... G1TM55 38718836
    922158 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    922159 9bdl:AS08 (2.8) BS01 rna N/A GO:0003735 ... G1TJW1 38718836
    922160 9bdl:AS08 (2.8) BS02 rna N/A GO:0003735 ... G1TJW1 38718836
    922161 9bdl:AS09 (2.8) BS01 rna N/A GO:0003723 ... B7NZS8 38718836
    922162 9bdl:AS10 (2.8) BS01 rna N/A N/A G1TPV3 38718836
    922163 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    922164 9bdl:AS12 (2.8) BS01 rna N/A GO:0003735 ... G1SFR8 38718836
    922165 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    922166 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    922167 9bdl:AS14 (2.8) BS01 rna N/A GO:0003735 ... G1T1F0 38718836
    922168 9bdl:AS15 (2.8) BS01 rna N/A GO:0003723 ... G1U0Q2 38718836
    922169 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    922170 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    922171 9bdl:AS18 (2.8) BS01 rna N/A GO:0003676 ... G1TPG3 38718836
    922172 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    922173 9bdl:AS20 (2.8) BS01 rna N/A GO:0003723 ... G1SIZ2 38718836
    922174 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    922175 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    922176 9bdl:AS24 (2.8) BS01 rna N/A GO:0003735 ... G1T3D8 38718836
    922177 9bdl:AS25 (2.8) BS01 rna N/A N/A G1TDB3 38718836
    922178 9bdl:AS26 (2.8) BS01 rna N/A GO:0003735 ... G1TFE8 38718836
    922179 9bdl:AS27 (2.8) BS01 rna N/A GO:0003735 ... G1TZ76 38718836
    922180 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    922181 9bdl:AS29 (2.8) BS01 rna N/A GO:0002181 ... G1U7M4 38718836
    922182 9bdl:AS30 (2.8) BS01 rna N/A GO:0003735 ... G1T8A2 38718836
    922183 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    922184 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    922185 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    922186 9bdn:AL04 (3.1) BS01 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    922187 9bdn:AL04 (3.1) BS02 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    922188 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    922189 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    922190 9bdn:AL06 (3.1) BS01 rna N/A GO:0003735 ... G1SKF7 38718836
    922191 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    922192 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    922193 9bdn:AL08 (3.1) BS01 rna N/A GO:0003723 ... G1STW0 38718836
    922194 9bdn:AL08 (3.1) BS02 rna N/A GO:0003723 ... G1STW0 38718836
    922195 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    922196 9bdn:AL10 (3.1) BS01 rna N/A GO:0003735 ... B7NZQ2 38718836
    922197 9bdn:AL10 (3.1) BS02 rna N/A GO:0003735 ... B7NZQ2 38718836
    922198 9bdn:AL10 (3.1) BS03 rna N/A GO:0003735 ... B7NZQ2 38718836
    922199 9bdn:AL11 (3.1) BS01 rna N/A GO:0003735 ... G1TUB8 38718836
    922200 9bdn:AL11 (3.1) BS02 rna N/A GO:0003735 ... G1TUB8 38718836

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).