SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    922001 8y5q:B1 (3.9) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    922002 8y5q:B1 (3.9) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    922003 8y5q:B1 (3.9) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    922004 8y5q:B1 (3.9) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    922005 8y5q:B2 (3.9) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    922006 8y5q:B2 (3.9) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    922007 8y5q:B2 (3.9) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    922008 8y5q:C (3.9) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    922009 8y5q:D (3.9) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    922010 8y5q:E (3.9) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    922011 8y5q:F (3.9) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    922012 8y5q:G (3.9) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    922013 8y5q:H (3.9) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    922014 8y5q:H (3.9) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    922015 8y5q:I (3.9) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    922016 8y5q:I (3.9) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    922017 8y5q:J (3.9) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    922018 8y5q:J (3.9) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    922019 8y5q:K (3.9) BS01 rna N/A GO:0002181 ... P02358 N/A
    922020 8y5q:L (3.9) BS01 rna N/A GO:0000028 ... P02359 N/A
    922021 8y5q:M (3.9) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    922022 8y5q:N (3.9) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    922023 8y5q:N (3.9) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    922024 8y5q:O (3.9) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    922025 8y5q:P (3.9) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    922026 8y5q:Q (3.9) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    922027 8y5q:R (3.9) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    922028 8y5q:S (3.9) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    922029 8y5q:T (3.9) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    922030 8y5q:T (3.9) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    922031 8y5q:U (3.9) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    922032 8y5q:V (3.9) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    922033 8y5q:W (3.9) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    922034 8y5q:X (3.9) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    922035 8y5q:Y (3.9) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    922036 8y5q:Z (3.9) BS01 rna N/A GO:0000028 ... P68679 N/A
    922037 8y5q:a (3.9) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    922038 8y5q:a (3.9) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    922039 8y5q:b (3.9) BS01 rna N/A GO:0000027 ... P60422 N/A
    922040 8y5q:b (3.9) BS02 rna N/A GO:0000027 ... P60422 N/A
    922041 8y5q:c (3.9) BS01 rna N/A GO:0000027 ... P60438 N/A
    922042 8y5q:d (3.9) BS01 rna N/A GO:0001070 ... P60723 N/A
    922043 8y5q:e (3.9) BS01 rna N/A GO:0000027 ... P62399 N/A
    922044 8y5q:e (3.9) BS02 rna N/A GO:0000027 ... P62399 N/A
    922045 8y5q:f (3.9) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    922046 8y5q:g (3.9) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    922047 8y5q:i (3.9) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    922048 8y5q:j (3.9) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    922049 8y5q:k (3.9) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    922050 8y5q:k (3.9) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    922051 8y5q:l (3.9) BS01 rna N/A GO:0002181 ... P02413 N/A
    922052 8y5q:m (3.9) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    922053 8y5q:m (3.9) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    922054 8y5q:n (3.9) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    922055 8y5q:o (3.9) BS01 rna N/A GO:0002181 ... P0C018 N/A
    922056 8y5q:o (3.9) BS02 rna N/A GO:0002181 ... P0C018 N/A
    922057 8y5q:p (3.9) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    922058 8y5q:p (3.9) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    922059 8y5q:q (3.9) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    922060 8y5q:r (3.9) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    922061 8y5q:s (3.9) BS01 rna N/A GO:0002181 ... P61175 N/A
    922062 8y5q:t (3.9) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    922063 8y5q:u (3.9) BS01 rna N/A GO:0000027 ... P60624 N/A
    922064 8y5q:v (3.9) BS01 rna N/A GO:0000027 ... P68919 N/A
    922065 8y5q:v (3.9) BS02 rna N/A GO:0000027 ... P68919 N/A
    922066 8y5q:w (3.9) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    922067 8y5q:w (3.9) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    922068 8y5q:x (3.9) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    922069 8y5q:y (3.9) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    922070 8y5q:z (3.9) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    922071 8y5q:z (3.9) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    922072 8y5r:0 (4.5) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    922073 8y5r:0 (4.5) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    922074 8y5r:0 (4.5) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    922075 8y5r:0 (4.5) BS04 FUA N/A GO:0003746 ... P0A6M8 N/A
    922076 8y5r:0 (4.5) BS05 GDP N/A GO:0003746 ... P0A6M8 N/A
    922077 8y5r:A (4.5) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    922078 8y5r:B (4.5) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    922079 8y5r:B1 (4.5) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    922080 8y5r:B1 (4.5) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    922081 8y5r:B1 (4.5) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    922082 8y5r:B1 (4.5) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    922083 8y5r:B2 (4.5) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    922084 8y5r:B2 (4.5) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    922085 8y5r:B2 (4.5) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    922086 8y5r:C (4.5) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    922087 8y5r:D (4.5) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    922088 8y5r:E (4.5) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    922089 8y5r:F (4.5) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    922090 8y5r:G (4.5) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    922091 8y5r:H (4.5) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    922092 8y5r:H (4.5) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    922093 8y5r:I (4.5) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    922094 8y5r:I (4.5) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    922095 8y5r:J (4.5) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    922096 8y5r:J (4.5) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    922097 8y5r:K (4.5) BS01 rna N/A GO:0002181 ... P02358 N/A
    922098 8y5r:L (4.5) BS01 rna N/A GO:0000028 ... P02359 N/A
    922099 8y5r:L (4.5) BS02 rna N/A GO:0000028 ... P02359 N/A
    922100 8y5r:M (4.5) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    922101 8y5r:N (4.5) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    922102 8y5r:O (4.5) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    922103 8y5r:P (4.5) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    922104 8y5r:Q (4.5) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    922105 8y5r:Q (4.5) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    922106 8y5r:R (4.5) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    922107 8y5r:S (4.5) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    922108 8y5r:T (4.5) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    922109 8y5r:T (4.5) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    922110 8y5r:U (4.5) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    922111 8y5r:V (4.5) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    922112 8y5r:W (4.5) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    922113 8y5r:X (4.5) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    922114 8y5r:Y (4.5) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    922115 8y5r:Z (4.5) BS01 rna N/A GO:0000028 ... P68679 N/A
    922116 8y5r:b (4.5) BS01 rna N/A GO:0000027 ... P60422 N/A
    922117 8y5r:c (4.5) BS01 rna N/A GO:0000027 ... P60438 N/A
    922118 8y5r:d (4.5) BS01 rna N/A GO:0001070 ... P60723 N/A
    922119 8y5r:e (4.5) BS01 rna N/A GO:0000027 ... P62399 N/A
    922120 8y5r:e (4.5) BS02 rna N/A GO:0000027 ... P62399 N/A
    922121 8y5r:e (4.5) BS03 rna N/A GO:0000027 ... P62399 N/A
    922122 8y5r:f (4.5) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    922123 8y5r:g (4.5) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    922124 8y5r:i (4.5) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    922125 8y5r:j (4.5) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    922126 8y5r:k (4.5) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    922127 8y5r:k (4.5) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    922128 8y5r:l (4.5) BS01 rna N/A GO:0002181 ... P02413 N/A
    922129 8y5r:m (4.5) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    922130 8y5r:m (4.5) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    922131 8y5r:n (4.5) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    922132 8y5r:o (4.5) BS01 rna N/A GO:0002181 ... P0C018 N/A
    922133 8y5r:o (4.5) BS02 rna N/A GO:0002181 ... P0C018 N/A
    922134 8y5r:p (4.5) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    922135 8y5r:p (4.5) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    922136 8y5r:q (4.5) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    922137 8y5r:r (4.5) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    922138 8y5r:s (4.5) BS01 rna N/A GO:0002181 ... P61175 N/A
    922139 8y5r:t (4.5) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    922140 8y5r:u (4.5) BS01 rna N/A GO:0000027 ... P60624 N/A
    922141 8y5r:v (4.5) BS01 rna N/A GO:0000027 ... P68919 N/A
    922142 8y5r:w (4.5) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    922143 8y5r:w (4.5) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    922144 8y5r:x (4.5) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    922145 8y5r:y (4.5) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    922146 8y5r:z (4.5) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    922147 8y5s:0 (4.5) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    922148 8y5s:0 (4.5) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    922149 8y5s:0 (4.5) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    922150 8y5s:A (4.5) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    922151 8y5s:B (4.5) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    922152 8y5s:B1 (4.5) BS01 rna N/A GO:0000287 ... P0A8T7 N/A
    922153 8y5s:B1 (4.5) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    922154 8y5s:B1 (4.5) BS03 dna N/A GO:0000287 ... P0A8T7 N/A
    922155 8y5s:B1 (4.5) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    922156 8y5s:B2 (4.5) BS01 rna N/A GO:0000345 ... P0A8V2 N/A
    922157 8y5s:B2 (4.5) BS02 dna N/A GO:0000345 ... P0A8V2 N/A
    922158 8y5s:B2 (4.5) BS03 dna N/A GO:0000345 ... P0A8V2 N/A
    922159 8y5s:C (4.5) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    922160 8y5s:D (4.5) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    922161 8y5s:E (4.5) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    922162 8y5s:F (4.5) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    922163 8y5s:G (4.5) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    922164 8y5s:H (4.5) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    922165 8y5s:H (4.5) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    922166 8y5s:I (4.5) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    922167 8y5s:I (4.5) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    922168 8y5s:J (4.5) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    922169 8y5s:J (4.5) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    922170 8y5s:K (4.5) BS01 rna N/A GO:0002181 ... P02358 N/A
    922171 8y5s:L (4.5) BS01 rna N/A GO:0000028 ... P02359 N/A
    922172 8y5s:L (4.5) BS02 rna N/A GO:0000028 ... P02359 N/A
    922173 8y5s:M (4.5) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    922174 8y5s:N (4.5) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    922175 8y5s:O (4.5) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    922176 8y5s:P (4.5) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    922177 8y5s:Q (4.5) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    922178 8y5s:Q (4.5) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    922179 8y5s:R (4.5) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    922180 8y5s:S (4.5) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    922181 8y5s:T (4.5) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    922182 8y5s:T (4.5) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    922183 8y5s:U (4.5) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    922184 8y5s:V (4.5) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    922185 8y5s:W (4.5) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    922186 8y5s:X (4.5) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    922187 8y5s:Y (4.5) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    922188 8y5s:Z (4.5) BS01 rna N/A GO:0000028 ... P68679 N/A
    922189 8y5s:b (4.5) BS01 rna N/A GO:0000027 ... P60422 N/A
    922190 8y5s:c (4.5) BS01 rna N/A GO:0000027 ... P60438 N/A
    922191 8y5s:d (4.5) BS01 rna N/A GO:0001070 ... P60723 N/A
    922192 8y5s:e (4.5) BS01 rna N/A GO:0000027 ... P62399 N/A
    922193 8y5s:e (4.5) BS02 rna N/A GO:0000027 ... P62399 N/A
    922194 8y5s:e (4.5) BS03 rna N/A GO:0000027 ... P62399 N/A
    922195 8y5s:f (4.5) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    922196 8y5s:g (4.5) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    922197 8y5s:i (4.5) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    922198 8y5s:j (4.5) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    922199 8y5s:k (4.5) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    922200 8y5s:k (4.5) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).