SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    922401 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    922402 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    922403 8y6o:O (3.38) BS01 rna ? GO:0000244 ... P55769 38484052
    922404 8y6o:R (3.38) BS01 rna ? GO:0000244 ... Q86UT8 38484052
    922405 8y6o:R (3.38) BS02 rna ? GO:0000244 ... Q86UT8 38484052
    922406 8y6o:R (3.38) BS03 ZN ? GO:0000244 ... Q86UT8 38484052
    922407 8y6o:R (3.38) BS04 ZN ? GO:0000244 ... Q86UT8 38484052
    922408 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000244 ... Q53GS9 38484052
    922409 8y6o:V (3.38) BS01 ZN ? GO:0000388 ... Q9UDW3 38484052
    922410 8y6o:V (3.38) BS02 ZN ? GO:0000388 ... Q9UDW3 38484052
    922411 8y6o:W (3.38) BS01 rna ? GO:0000388 ... Q16560 38484052
    922412 8y6o:W (3.38) BS02 rna ? GO:0000388 ... Q16560 38484052
    922413 8y6o:X (3.38) BS01 rna ? GO:0000388 ... Q9BV90 38484052
    922414 8y6o:X (3.38) BS02 rna ? GO:0000388 ... Q9BV90 38484052
    922415 8y6o:Y (3.38) BS01 rna ? GO:0000388 ... Q6IEG0 38484052
    922416 8y6o:Y (3.38) BS02 rna ? GO:0000388 ... Q6IEG0 38484052
    922417 8y6o:Y (3.38) BS03 ZN ? GO:0000388 ... Q6IEG0 38484052
    922418 8y6o:Z (3.38) BS01 rna ? GO:0000388 ... Q8N8D1 38484052
    922419 8y6o:a (3.38) BS01 rna ? GO:0000244 ... P14678 38484052
    922420 8y6o:b (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    922421 8y6o:c (3.38) BS01 rna ? GO:0000244 ... P62316 38484052
    922422 8y6o:d (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    922423 8y6o:e (3.38) BS01 rna ? GO:0000244 ... P62304 38484052
    922424 8y6o:f (3.38) BS01 rna ? GO:0000244 ... P62306 38484052
    922425 8y6o:g (3.38) BS01 rna ? GO:0000244 ... P62308 38484052
    922426 8y6o:h (3.38) BS01 rna ? GO:0000244 ... P14678 38484052
    922427 8y6o:i (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    922428 8y6o:j (3.38) BS01 rna ? GO:0000244 ... P62316 38484052
    922429 8y6o:k (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    922430 8y6o:l (3.38) BS01 rna ? GO:0000244 ... P62304 38484052
    922431 8y6o:m (3.38) BS01 rna ? GO:0000244 ... P62306 38484052
    922432 8y6o:n (3.38) BS01 rna ? GO:0000244 ... P62308 38484052
    922433 8y6o:o (3.38) BS01 rna ? GO:0000244 ... P14678 38484052
    922434 8y6o:p (3.38) BS01 rna ? GO:0000243 ... P62314 38484052
    922435 8y6o:q (3.38) BS01 rna ? GO:0000244 ... P62316 38484052
    922436 8y6o:r (3.38) BS01 rna ? GO:0000243 ... P62318 38484052
    922437 8y6o:s (3.38) BS01 rna ? GO:0000244 ... P62304 38484052
    922438 8y6o:t (3.38) BS01 rna ? GO:0000244 ... P62306 38484052
    922439 8y6o:u (3.38) BS01 rna ? GO:0000244 ... P62308 38484052
    922440 8y6u:C (3.97) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    922441 8y6u:C (3.97) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38039839
    922442 8y6u:D (3.97) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    922443 8y6u:D (3.97) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38039839
    922444 8y6u:F (3.97) BS01 dna ? GO:0000976 ... P00579 38039839
    922445 8y6u:F (3.97) BS02 dna ? GO:0000976 ... P00579 38039839
    922446 8y6u:H (3.97) BS01 dna ? GO:0003700 ... P0A9F6 38039839
    922447 8y6u:H (3.97) BS02 dna ? GO:0003700 ... P0A9F6 38039839
    922448 8y6u:I (3.97) BS01 dna 2.7.7.6 GO:0003677 ... P0A7Z4 38039839
    922449 8y6u:I (3.97) BS02 dna 2.7.7.6 GO:0003677 ... P0A7Z4 38039839
    922450 8y6u:J (3.97) BS01 dna ? GO:0003700 ... P0A9F6 38039839
    922451 8y6u:J (3.97) BS02 dna ? GO:0003700 ... P0A9F6 38039839
    922452 8y6w:R (3.19) BS01 9UJ N/A GO:0002232 ... O15552 40140663
    922453 8y6w:R (3.19) BS02 A1LYC N/A GO:0002232 ... O15552 40140663
    922454 8y6x:A (3.4) BS01 A1LXU N/A N/A Q95460 39432319
    922455 8y6y:A (3.36) BS01 A1LYD N/A GO:0004930 ... O15552 40140663
    922456 8y71:R (2.97) BS01 A1D6B N/A GO:0004985 ... P41143 41671375
    922457 8y71:R (2.97) BS02 A1D6F N/A GO:0004985 ... P41143 41671375
    922458 8y72:R (2.65) BS01 peptide N/A GO:0001965 ... P35372 41671375
    922459 8y72:R (2.65) BS02 CLR N/A GO:0001965 ... P35372 41671375
    922460 8y72:R (2.65) BS03 CLR N/A GO:0001965 ... P35372 41671375
    922461 8y72:R (2.65) BS04 VV9 N/A GO:0001965 ... P35372 41671375
    922462 8y73:R (2.84) BS01 peptide N/A GO:0001965 ... P35372 41671375
    922463 8y73:R (2.84) BS02 CLR N/A GO:0001965 ... P35372 41671375
    922464 8y73:R (2.84) BS03 A1D6C N/A GO:0001965 ... P35372 41671375
    922465 8y74:A (1.9) BS01 peptide N/A N/A O46789 38768812
    922466 8y74:D (1.9) BS01 peptide N/A N/A O46789 38768812
    922467 8y7e:1 (4.66) BS01 rna ? GO:0000245 ... O75533 38484052
    922468 8y7e:1 (4.66) BS02 rna ? GO:0000245 ... O75533 38484052
    922469 8y7e:2 (4.66) BS01 rna ? GO:0000387 ... Q13435 38484052
    922470 8y7e:6 (4.66) BS01 rna ? GO:0000387 ... Q7RTV0 38484052
    922471 8y7e:6 (4.66) BS02 rna ? GO:0000387 ... Q7RTV0 38484052
    922472 8y7e:6 (4.66) BS03 ZN ? GO:0000387 ... Q7RTV0 38484052
    922473 8y7e:6 (4.66) BS04 ZN ? GO:0000387 ... Q7RTV0 38484052
    922474 8y7e:6 (4.66) BS05 ZN ? GO:0000387 ... Q7RTV0 38484052
    922475 8y7e:h (4.66) BS01 rna ? GO:0000243 ... P62318 38484052
    922476 8y7e:i (4.66) BS01 rna ? GO:0000244 ... P14678 38484052
    922477 8y7e:j (4.66) BS01 rna ? GO:0000243 ... P62314 38484052
    922478 8y7e:k (4.66) BS01 rna ? GO:0000244 ... P62316 38484052
    922479 8y7e:l (4.66) BS01 rna ? GO:0000244 ... P62304 38484052
    922480 8y7e:m (4.66) BS01 rna ? GO:0000244 ... P62306 38484052
    922481 8y7e:n (4.66) BS01 rna ? GO:0000244 ... P62308 38484052
    922482 8y7e:v (4.66) BS01 rna ? GO:0000380 ... Q9BWG6 38484052
    922483 8y7e:v (4.66) BS02 ZN ? GO:0000380 ... Q9BWG6 38484052
    922484 8y7g:A (3.15) BS01 rna N/A N/A A0ACD6B9W9 38967023
    922485 8y7g:A (3.15) BS02 rna N/A N/A A0ACD6B9W9 38967023
    922486 8y7g:A (3.15) BS03 ACT N/A N/A A0ACD6B9W9 38967023
    922487 8y7g:B (3.15) BS01 rna N/A N/A A0ACD6B9W9 38967023
    922488 8y7g:B (3.15) BS02 rna N/A N/A A0ACD6B9W9 38967023
    922489 8y7g:B (3.15) BS03 ACT N/A N/A A0ACD6B9W9 38967023
    922490 8y7l:B (2.683) BS01 A1D59 N/A GO:0003677 ... P22736 39807329
    922491 8y7s:A (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922492 8y7s:A (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922493 8y7s:A (2.68) BS03 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922494 8y7s:B (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922495 8y7s:B (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922496 8y7s:B (2.68) BS03 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922497 8y7s:C (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922498 8y7s:C (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922499 8y7s:D (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922500 8y7s:D (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922501 8y7s:E (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922502 8y7s:E (2.68) BS02 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922503 8y7s:E (2.68) BS03 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922504 8y7s:F (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922505 8y7s:F (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922506 8y7s:G (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922507 8y7s:G (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922508 8y7s:H (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922509 8y7s:H (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922510 8y7s:I (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922511 8y7s:I (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922512 8y7s:J (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922513 8y7s:J (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922514 8y7s:J (2.68) BS03 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922515 8y7s:K (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922516 8y7s:K (2.68) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922517 8y7s:L (2.68) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922518 8y7s:L (2.68) BS02 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922519 8y7s:L (2.68) BS03 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922520 8y7t:A (2.5) BS01 A1LX1 N/A GO:0008233 ... P0DTC1 40239482
    922521 8y7u:A (2.2) BS01 A1LX2 N/A GO:0008233 ... P0DTC1 40239482
    922522 8y7w:A (2.3) BS01 ZN N/A GO:0004797 ... Q5HE81 40189173
    922523 8y7y:A (3.24) BS01 MJJ N/A GO:0016020 ... Q5MQD0 38964329
    922524 8y7z:A (2.57) BS01 rna N/A N/A Q74DF6 39366953
    922525 8y7z:A (2.57) BS02 dna N/A N/A Q74DF6 39366953
    922526 8y7z:B (2.57) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922527 8y7z:B (2.57) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922528 8y7z:B (2.57) BS03 MG N/A GO:0003676 ... Q74DF5 39366953
    922529 8y80:A (3.38) BS01 rna N/A N/A Q74DF6 39366953
    922530 8y80:A (3.38) BS02 dna N/A N/A Q74DF6 39366953
    922531 8y80:B (3.38) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922532 8y80:B (3.38) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922533 8y80:B (3.38) BS03 MG N/A GO:0003676 ... Q74DF5 39366953
    922534 8y80:E (3.38) BS01 rna N/A N/A Q74DF6 39366953
    922535 8y80:E (3.38) BS02 dna N/A N/A Q74DF6 39366953
    922536 8y80:F (3.38) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922537 8y80:F (3.38) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922538 8y80:I (3.38) BS01 rna N/A N/A Q74DF6 39366953
    922539 8y80:I (3.38) BS02 dna N/A N/A Q74DF6 39366953
    922540 8y80:J (3.38) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922541 8y80:J (3.38) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922542 8y80:J (3.38) BS03 MG N/A GO:0003676 ... Q74DF5 39366953
    922543 8y80:M (3.38) BS01 rna N/A N/A Q74DF6 39366953
    922544 8y80:M (3.38) BS02 dna N/A N/A Q74DF6 39366953
    922545 8y80:N (3.38) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922546 8y80:N (3.38) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922547 8y81:B (2.89) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    922548 8y82:A (3.4) BS01 rna N/A N/A Q74DF6 39366953
    922549 8y82:A (3.4) BS02 dna N/A N/A Q74DF6 39366953
    922550 8y82:B (3.4) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922551 8y82:B (3.4) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922552 8y82:B (3.4) BS03 MG N/A GO:0003676 ... Q74DF5 39366953
    922553 8y82:E (3.4) BS01 rna N/A N/A Q74DF6 39366953
    922554 8y82:E (3.4) BS02 dna N/A N/A Q74DF6 39366953
    922555 8y82:E (3.4) BS03 AMP N/A N/A Q74DF6 39366953
    922556 8y82:F (3.4) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922557 8y82:F (3.4) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922558 8y82:I (3.4) BS01 rna N/A N/A Q74DF6 39366953
    922559 8y82:I (3.4) BS02 dna N/A N/A Q74DF6 39366953
    922560 8y82:J (3.4) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922561 8y82:J (3.4) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922562 8y82:J (3.4) BS03 MG N/A GO:0003676 ... Q74DF5 39366953
    922563 8y82:M (3.4) BS01 rna N/A N/A Q74DF6 39366953
    922564 8y82:M (3.4) BS02 dna N/A N/A Q74DF6 39366953
    922565 8y82:M (3.4) BS03 AMP N/A N/A Q74DF6 39366953
    922566 8y82:N (3.4) BS01 rna N/A GO:0003676 ... Q74DF5 39366953
    922567 8y82:N (3.4) BS02 dna N/A GO:0003676 ... Q74DF5 39366953
    922568 8y83:A (2.0) BS01 NAD ? GO:0006629 ... A0A562MSV3 39059522
    922569 8y83:B (2.0) BS01 NAD ? GO:0006629 ... A0A562MSV3 39059522
    922570 8y84:A (2.98) BS01 Y01 N/A N/A P12371 39169187
    922571 8y84:B (2.98) BS01 Y01 N/A GO:0005768 ... P13386 39169187
    922572 8y85:A (2.73) BS01 BCT N/A GO:0005452 ... P48751 39033175
    922573 8y85:A (2.73) BS02 4KU N/A GO:0005452 ... P48751 39033175
    922574 8y85:B (2.73) BS01 4KU N/A GO:0005452 ... P48751 39033175
    922575 8y86:A (2.75) BS01 BCT N/A GO:0005452 ... P48751 39033175
    922576 8y8b:A (3.01) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    922577 8y8j:A (3.57) BS01 MJJ N/A GO:0016020 ... Q0ZME7 38964329
    922578 8y8m:A (1.98) BS01 TPP N/A GO:0000287 ... A0ACD6BAE4 N/A
    922579 8y8m:A (1.98) BS02 MG N/A GO:0000287 ... A0ACD6BAE4 N/A
    922580 8y8v:A (2.49) BS01 P5S N/A GO:0005515 ... O14520 40113770
    922581 8y8z:A (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    922582 8y8z:E (3.29) BS01 A1LX3 ? GO:0003779 ... P23975 38750358
    922583 8y90:A (3.15) BS01 A1LX6 ? GO:0003779 ... P23975 38750358
    922584 8y91:A (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    922585 8y91:D (3.13) BS01 A1LX5 ? GO:0003779 ... P23975 38750358
    922586 8y92:A (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    922587 8y92:B (3.29) BS01 A1LX4 ? GO:0003779 ... P23975 38750358
    922588 8y93:A (3.0) BS01 TP0 ? GO:0003779 ... P23975 38750358
    922589 8y95:A (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    922590 8y95:D (3.24) BS01 E5E ? GO:0003779 ... P23975 38750358
    922591 8y97:A (2.83) BS01 PMP N/A GO:0000271 ... A0A2I5TIB4 39618122
    922592 8y97:B (2.83) BS01 PMP N/A GO:0000271 ... A0A2I5TIB4 39618122
    922593 8y98:A (2.31) BS01 PGU N/A GO:0000271 ... A0A2I5TIB4 39618122
    922594 8y98:B (2.31) BS01 PGU N/A GO:0000271 ... A0A2I5TIB4 39618122
    922595 8y9b:B (3.2) BS01 ZN N/A GO:0005576 ... P18177 39358329
    922596 8y9c:B (3.0) BS01 ZN N/A GO:0005576 ... Q9EXR0 39358329
    922597 8y9d:A (2.45) BS01 DST N/A GO:0009820 ... A0A117NS29 39747040
    922598 8y9d:A (2.45) BS02 A1LYE N/A GO:0009820 ... A0A117NS29 39747040
    922599 8y9d:B (2.45) BS01 DST N/A GO:0009820 ... A0A117NS29 39747040
    922600 8y9d:B (2.45) BS02 A1LYE N/A GO:0009820 ... A0A117NS29 39747040

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).