SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    922801 8ybk:H (2.69) BS02 dna N/A GO:0000786 ... P06899 38972377
    922802 8ybq:A (2.59) BS01 CHT N/A GO:0016020 ... N/A 39141726
    922803 8ybq:B (2.59) BS01 CHT N/A GO:0016020 ... N/A 39141726
    922804 8ybq:C (2.59) BS01 CHT N/A GO:0016020 ... N/A 39141726
    922805 8yc0:e (4.12) BS01 peptide ? GO:0004888 ... P07766 38657677
    922806 8yc0:m (4.12) BS01 peptide ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    922807 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6
    38657677
    922808 8yc0:n (4.12) BS01 peptide ? GO:0002250 ... P0CF51
    Q99603
    38657677
    922809 8ycp:A (2.87) BS01 A1LZ2 N/A GO:0005216 ... Q8NER1 N/A
    922810 8ycp:B (2.87) BS01 A1LZ2 N/A GO:0005216 ... Q8NER1 N/A
    922811 8ycp:B (2.87) BS02 6OU N/A GO:0005216 ... Q8NER1 N/A
    922812 8ycp:B (2.87) BS03 6OU N/A GO:0005216 ... Q8NER1 N/A
    922813 8ycp:C (2.87) BS01 A1LZ2 N/A GO:0005216 ... Q8NER1 N/A
    922814 8ycp:D (2.87) BS01 A1LZ2 N/A GO:0005216 ... Q8NER1 N/A
    922815 8ycp:D (2.87) BS02 6OU N/A GO:0005216 ... Q8NER1 N/A
    922816 8ycx:A (2.2) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922817 8ycx:A (2.2) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922818 8ycx:A (2.2) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922819 8ycx:B (2.2) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922820 8ycx:B (2.2) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922821 8ycx:B (2.2) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922822 8ycx:B (2.2) BS04 MG N/A GO:0005524 ... P9WPC9 N/A
    922823 8ycx:B (2.2) BS05 ATP N/A GO:0005524 ... P9WPC9 N/A
    922824 8ycx:B (2.2) BS06 ATP N/A GO:0005524 ... P9WPC9 N/A
    922825 8ycx:B (2.2) BS07 MG N/A GO:0005524 ... P9WPC9 N/A
    922826 8ycx:C (2.2) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922827 8ycx:C (2.2) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922828 8ycx:C (2.2) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922829 8ycx:C (2.2) BS04 ATP N/A GO:0005524 ... P9WPC9 N/A
    922830 8ycx:D (2.2) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922831 8ycx:D (2.2) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922832 8ycx:D (2.2) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922833 8ycx:D (2.2) BS04 ADP N/A GO:0005524 ... P9WPC9 N/A
    922834 8ycx:D (2.2) BS05 ATP N/A GO:0005524 ... P9WPC9 N/A
    922835 8ycx:E (2.2) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922836 8ycx:E (2.2) BS02 ADP N/A GO:0005524 ... P9WPC9 N/A
    922837 8ycx:E (2.2) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922838 8ycx:F (2.2) BS01 ADP N/A GO:0005524 ... P9WPC9 N/A
    922839 8ycx:F (2.2) BS02 ADP N/A GO:0005524 ... P9WPC9 N/A
    922840 8ycx:G (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922841 8ycx:H (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922842 8ycx:I (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922843 8ycx:J (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922844 8ycx:K (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922845 8ycx:L (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922846 8ycx:M (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922847 8ycx:N (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922848 8ycx:O (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922849 8ycx:P (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922850 8ycx:Q (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922851 8ycx:R (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922852 8ycx:S (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922853 8ycx:T (2.2) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922854 8yd0:A (2.24) BS01 ATP N/A GO:0005524 ... P9WPB9 N/A
    922855 8yd0:B (2.24) BS01 ATP N/A GO:0005524 ... P9WPB9 N/A
    922856 8yd0:B (2.24) BS02 ATP N/A GO:0005524 ... P9WPB9 N/A
    922857 8yd0:C (2.24) BS01 ATP N/A GO:0005524 ... P9WPB9 N/A
    922858 8yd0:D (2.24) BS01 ATP N/A GO:0005524 ... P9WPB9 N/A
    922859 8yd0:D (2.24) BS02 ATP N/A GO:0005524 ... P9WPB9 N/A
    922860 8yd0:E (2.24) BS01 ATP N/A GO:0005524 ... P9WPB9 N/A
    922861 8yd0:E (2.24) BS02 ADP N/A GO:0005524 ... P9WPB9 N/A
    922862 8yd0:F (2.24) BS01 ADP N/A GO:0005524 ... P9WPB9 N/A
    922863 8yd0:H (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922864 8yd0:I (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922865 8yd0:K (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922866 8yd0:L (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922867 8yd0:M (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922868 8yd0:N (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922869 8yd0:O (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922870 8yd0:P (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922871 8yd0:Q (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922872 8yd0:R (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922873 8yd0:S (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922874 8yd0:T (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922875 8yd0:U (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922876 8yd0:V (2.24) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922877 8yd1:A (2.81) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922878 8yd1:A (2.81) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922879 8yd1:A (2.81) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922880 8yd1:B (2.81) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922881 8yd1:B (2.81) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922882 8yd1:B (2.81) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922883 8yd1:B (2.81) BS04 ATP N/A GO:0005524 ... P9WPC9 N/A
    922884 8yd1:B (2.81) BS05 ATP N/A GO:0005524 ... P9WPC9 N/A
    922885 8yd1:C (2.81) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922886 8yd1:C (2.81) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922887 8yd1:C (2.81) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922888 8yd1:C (2.81) BS04 ATP N/A GO:0005524 ... P9WPC9 N/A
    922889 8yd1:D (2.81) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922890 8yd1:D (2.81) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922891 8yd1:D (2.81) BS03 ATP N/A GO:0005524 ... P9WPC9 N/A
    922892 8yd1:D (2.81) BS04 ADP N/A GO:0005524 ... P9WPC9 N/A
    922893 8yd1:D (2.81) BS05 ATP N/A GO:0005524 ... P9WPC9 N/A
    922894 8yd1:E (2.81) BS01 peptide N/A GO:0005524 ... P9WPC9 N/A
    922895 8yd1:E (2.81) BS02 ATP N/A GO:0005524 ... P9WPC9 N/A
    922896 8yd1:E (2.81) BS03 ADP N/A GO:0005524 ... P9WPC9 N/A
    922897 8yd1:F (2.81) BS01 ADP N/A GO:0005524 ... P9WPC9 N/A
    922898 8yd1:G (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922899 8yd1:H (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922900 8yd1:I (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922901 8yd1:J (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922902 8yd1:K (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922903 8yd1:L (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922904 8yd1:M (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922905 8yd1:N (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922906 8yd1:O (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922907 8yd1:P (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922908 8yd1:Q (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922909 8yd1:R (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922910 8yd1:S (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922911 8yd1:T (2.81) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922912 8yd2:A (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922913 8yd2:B (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922914 8yd2:C (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922915 8yd2:D (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922916 8yd2:E (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922917 8yd2:F (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922918 8yd2:G (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922919 8yd2:H (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922920 8yd2:I (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922921 8yd2:J (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922922 8yd2:K (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922923 8yd2:L (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922924 8yd2:M (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC5 N/A
    922925 8yd2:N (2.39) BS01 BO2 N/A GO:0004176 ... P9WPC3 N/A
    922926 8yd3:A (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922927 8yd3:A (1.96) BS02 A1LYN N/A GO:0000303 ... P00441 N/A
    922928 8yd3:B (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922929 8yd3:C (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922930 8yd3:C (1.96) BS02 A1LYN N/A GO:0000303 ... P00441 N/A
    922931 8yd3:D (1.96) BS01 A1LYN N/A GO:0000303 ... P00441 N/A
    922932 8yd3:D (1.96) BS02 ZN N/A GO:0000303 ... P00441 N/A
    922933 8yd3:E (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922934 8yd3:F (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922935 8yd3:H (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922936 8yd3:H (1.96) BS02 A1LYN N/A GO:0000303 ... P00441 N/A
    922937 8yd3:I (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922938 8yd3:I (1.96) BS02 A1LYN N/A GO:0000303 ... P00441 N/A
    922939 8yd3:J (1.96) BS01 ZN N/A GO:0000303 ... P00441 N/A
    922940 8yd9:A (1.66) BS01 6GI N/A GO:0000165 ... Q16539 N/A
    922941 8ydb:A (3.4) BS01 rna N/A N/A A0AAX7FM22 39047725
    922942 8ydb:A (3.4) BS02 rna N/A N/A A0AAX7FM22 39047725
    922943 8ydb:B (3.4) BS01 rna N/A GO:0004519 ... A0AAX7FM27 39047725
    922944 8ydb:D (3.4) BS01 rna N/A N/A A0AAX7FM28 39047725
    922945 8ydb:E (3.4) BS01 rna N/A N/A A0AAX7FM28 39047725
    922946 8ydb:E (3.4) BS02 rna N/A N/A A0AAX7FM28 39047725
    922947 8ydb:F (3.4) BS01 rna N/A N/A A0AAX7FM28 39047725
    922948 8ydb:F (3.4) BS02 rna N/A N/A A0AAX7FM28 39047725
    922949 8ydb:G (3.4) BS01 rna N/A N/A A0AAX7FM28 39047725
    922950 8ydb:G (3.4) BS02 rna N/A N/A A0AAX7FM28 39047725
    922951 8ydb:H (3.4) BS01 rna N/A N/A A0AAX7FM28 39047725
    922952 8ydb:H (3.4) BS02 rna N/A N/A A0AAX7FM28 39047725
    922953 8ydb:I (3.4) BS01 rna N/A N/A A0AAX7FM28 39047725
    922954 8ydb:I (3.4) BS02 rna N/A N/A A0AAX7FM28 39047725
    922955 8ydb:J (3.4) BS01 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    922956 8ydb:J (3.4) BS02 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    922957 8ydb:J (3.4) BS03 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    922958 8yde:A (5.0) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    922959 8yde:B (5.0) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    922960 8yde:B1 (5.0) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    922961 8yde:B1 (5.0) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    922962 8yde:B1 (5.0) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    922963 8yde:B1 (5.0) BS04 MG N/A GO:0003677 ... P0A7K2 N/A
    922964 8yde:B2 (5.0) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    922965 8yde:B2 (5.0) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    922966 8yde:B2 (5.0) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    922967 8yde:C (5.0) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    922968 8yde:D (5.0) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    922969 8yde:E (5.0) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    922970 8yde:F (5.0) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    922971 8yde:G (5.0) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    922972 8yde:H (5.0) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    922973 8yde:H (5.0) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    922974 8yde:I (5.0) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    922975 8yde:I (5.0) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    922976 8yde:J (5.0) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    922977 8yde:J (5.0) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    922978 8yde:K (5.0) BS01 rna N/A GO:0002181 ... P02358 N/A
    922979 8yde:L (5.0) BS01 rna N/A GO:0000028 ... P02359 N/A
    922980 8yde:L (5.0) BS02 rna N/A GO:0000028 ... P02359 N/A
    922981 8yde:M (5.0) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    922982 8yde:N (5.0) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    922983 8yde:N (5.0) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    922984 8yde:O (5.0) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    922985 8yde:P (5.0) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    922986 8yde:Q (5.0) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    922987 8yde:Q (5.0) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    922988 8yde:R (5.0) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    922989 8yde:S (5.0) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    922990 8yde:T (5.0) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    922991 8yde:T (5.0) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    922992 8yde:U (5.0) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    922993 8yde:V (5.0) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    922994 8yde:W (5.0) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    922995 8yde:X (5.0) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    922996 8yde:Y (5.0) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    922997 8yde:Z (5.0) BS01 rna N/A GO:0000028 ... P68679 N/A
    922998 8yde:b (5.0) BS01 rna N/A GO:0003723 ... P0A7M9 N/A
    922999 8yde:c (5.0) BS01 rna N/A GO:0000027 ... P60438 N/A
    923000 8yde:d (5.0) BS01 rna N/A GO:0003735 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).