SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    923001 8yde:e (5.0) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923002 8yde:e (5.0) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923003 8yde:e (5.0) BS03 rna N/A GO:0003735 ... P0A7M9 N/A
    923004 8yde:f (5.0) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    923005 8yde:g (5.0) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    923006 8yde:i (5.0) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    923007 8yde:j (5.0) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    923008 8yde:k (5.0) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    923009 8yde:k (5.0) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    923010 8yde:l (5.0) BS01 rna N/A GO:0002181 ... P02413 N/A
    923011 8yde:m (5.0) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    923012 8yde:m (5.0) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    923013 8yde:m (5.0) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    923014 8yde:n (5.0) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    923015 8yde:o (5.0) BS01 rna N/A GO:0002181 ... P0C018 N/A
    923016 8yde:o (5.0) BS02 rna N/A GO:0002181 ... P0C018 N/A
    923017 8yde:p (5.0) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923018 8yde:p (5.0) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923019 8yde:q (5.0) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    923020 8yde:r (5.0) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    923021 8yde:s (5.0) BS01 rna N/A GO:0002181 ... P61175 N/A
    923022 8yde:t (5.0) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    923023 8yde:u (5.0) BS01 rna N/A GO:0000027 ... P60624 N/A
    923024 8yde:v (5.0) BS01 rna N/A GO:0000027 ... P68919 N/A
    923025 8yde:w (5.0) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    923026 8yde:w (5.0) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    923027 8yde:x (5.0) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    923028 8yde:y (5.0) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923029 8yde:z (5.0) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    923030 8ydf:A (4.6) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    923031 8ydf:B (4.6) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    923032 8ydf:B1 (4.6) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923033 8ydf:B1 (4.6) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923034 8ydf:B1 (4.6) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923035 8ydf:B1 (4.6) BS04 MG N/A GO:0003677 ... P0A7K2 N/A
    923036 8ydf:B2 (4.6) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923037 8ydf:B2 (4.6) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923038 8ydf:B2 (4.6) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923039 8ydf:C (4.6) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    923040 8ydf:D (4.6) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    923041 8ydf:E (4.6) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    923042 8ydf:F (4.6) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    923043 8ydf:G (4.6) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    923044 8ydf:H (4.6) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    923045 8ydf:H (4.6) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    923046 8ydf:I (4.6) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    923047 8ydf:I (4.6) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    923048 8ydf:J (4.6) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    923049 8ydf:J (4.6) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    923050 8ydf:K (4.6) BS01 rna N/A GO:0002181 ... P02358 N/A
    923051 8ydf:L (4.6) BS01 rna N/A GO:0000028 ... P02359 N/A
    923052 8ydf:L (4.6) BS02 rna N/A GO:0000028 ... P02359 N/A
    923053 8ydf:M (4.6) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    923054 8ydf:N (4.6) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    923055 8ydf:N (4.6) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    923056 8ydf:O (4.6) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    923057 8ydf:P (4.6) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    923058 8ydf:Q (4.6) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    923059 8ydf:Q (4.6) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    923060 8ydf:R (4.6) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    923061 8ydf:S (4.6) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    923062 8ydf:T (4.6) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    923063 8ydf:T (4.6) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    923064 8ydf:U (4.6) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    923065 8ydf:V (4.6) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    923066 8ydf:W (4.6) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    923067 8ydf:X (4.6) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    923068 8ydf:Y (4.6) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    923069 8ydf:Z (4.6) BS01 rna N/A GO:0000028 ... P68679 N/A
    923070 8ydf:b (4.6) BS01 rna N/A GO:0003723 ... P0A7M9 N/A
    923071 8ydf:c (4.6) BS01 rna N/A GO:0000027 ... P60438 N/A
    923072 8ydf:d (4.6) BS01 rna N/A GO:0003735 ... N/A N/A
    923073 8ydf:e (4.6) BS01 rna N/A GO:0000027 ... P62399 N/A
    923074 8ydf:e (4.6) BS02 rna N/A GO:0000027 ... P62399 N/A
    923075 8ydf:e (4.6) BS03 rna N/A GO:0000027 ... P62399 N/A
    923076 8ydf:f (4.6) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923077 8ydf:g (4.6) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    923078 8ydf:i (4.6) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    923079 8ydf:j (4.6) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    923080 8ydf:k (4.6) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    923081 8ydf:k (4.6) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    923082 8ydf:l (4.6) BS01 rna N/A GO:0002181 ... P02413 N/A
    923083 8ydf:m (4.6) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    923084 8ydf:m (4.6) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    923085 8ydf:m (4.6) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    923086 8ydf:n (4.6) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    923087 8ydf:o (4.6) BS01 rna N/A GO:0002181 ... P0C018 N/A
    923088 8ydf:o (4.6) BS02 rna N/A GO:0002181 ... P0C018 N/A
    923089 8ydf:p (4.6) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923090 8ydf:p (4.6) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923091 8ydf:q (4.6) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    923092 8ydf:r (4.6) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    923093 8ydf:s (4.6) BS01 rna N/A GO:0002181 ... P61175 N/A
    923094 8ydf:t (4.6) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    923095 8ydf:u (4.6) BS01 rna N/A GO:0000027 ... P60624 N/A
    923096 8ydf:v (4.6) BS01 rna N/A GO:0000027 ... P68919 N/A
    923097 8ydf:w (4.6) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    923098 8ydf:w (4.6) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    923099 8ydf:x (4.6) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    923100 8ydf:y (4.6) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923101 8ydf:z (4.6) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    923102 8ydg:0 (5.1) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    923103 8ydg:0 (5.1) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    923104 8ydg:0 (5.1) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    923105 8ydg:0 (5.1) BS04 GDP N/A GO:0003746 ... P0A6M8 N/A
    923106 8ydg:A (5.1) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    923107 8ydg:B (5.1) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    923108 8ydg:B1 (5.1) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923109 8ydg:B1 (5.1) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923110 8ydg:B1 (5.1) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923111 8ydg:B1 (5.1) BS04 MG N/A GO:0003677 ... P0A7K2 N/A
    923112 8ydg:B2 (5.1) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923113 8ydg:B2 (5.1) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923114 8ydg:B2 (5.1) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923115 8ydg:C (5.1) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    923116 8ydg:D (5.1) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    923117 8ydg:E (5.1) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    923118 8ydg:F (5.1) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    923119 8ydg:G (5.1) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    923120 8ydg:H (5.1) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    923121 8ydg:H (5.1) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    923122 8ydg:I (5.1) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    923123 8ydg:I (5.1) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    923124 8ydg:J (5.1) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    923125 8ydg:J (5.1) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    923126 8ydg:K (5.1) BS01 rna N/A GO:0002181 ... P02358 N/A
    923127 8ydg:L (5.1) BS01 rna N/A GO:0000028 ... P02359 N/A
    923128 8ydg:M (5.1) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    923129 8ydg:N (5.1) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    923130 8ydg:N (5.1) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    923131 8ydg:O (5.1) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    923132 8ydg:P (5.1) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    923133 8ydg:Q (5.1) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    923134 8ydg:R (5.1) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    923135 8ydg:S (5.1) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    923136 8ydg:T (5.1) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    923137 8ydg:T (5.1) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    923138 8ydg:U (5.1) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    923139 8ydg:V (5.1) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    923140 8ydg:W (5.1) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    923141 8ydg:X (5.1) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    923142 8ydg:Y (5.1) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    923143 8ydg:Z (5.1) BS01 rna N/A GO:0000028 ... P68679 N/A
    923144 8ydg:a (5.1) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    923145 8ydg:a (5.1) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    923146 8ydg:b (5.1) BS01 rna N/A GO:0003723 ... P0A7M9 N/A
    923147 8ydg:b (5.1) BS02 rna N/A GO:0003723 ... P0A7M9 N/A
    923148 8ydg:c (5.1) BS01 rna N/A GO:0000027 ... P60438 N/A
    923149 8ydg:d (5.1) BS01 rna N/A GO:0003735 ... N/A N/A
    923150 8ydg:e (5.1) BS01 rna N/A GO:0000027 ... P62399 N/A
    923151 8ydg:e (5.1) BS02 rna N/A GO:0000027 ... P62399 N/A
    923152 8ydg:f (5.1) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    923153 8ydg:g (5.1) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923154 8ydg:i (5.1) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    923155 8ydg:j (5.1) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    923156 8ydg:k (5.1) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    923157 8ydg:k (5.1) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    923158 8ydg:l (5.1) BS01 rna N/A GO:0002181 ... P02413 N/A
    923159 8ydg:m (5.1) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    923160 8ydg:m (5.1) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    923161 8ydg:m (5.1) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    923162 8ydg:n (5.1) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    923163 8ydg:o (5.1) BS01 rna N/A GO:0002181 ... P0C018 N/A
    923164 8ydg:o (5.1) BS02 rna N/A GO:0002181 ... P0C018 N/A
    923165 8ydg:p (5.1) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923166 8ydg:p (5.1) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923167 8ydg:q (5.1) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    923168 8ydg:r (5.1) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    923169 8ydg:s (5.1) BS01 rna N/A GO:0002181 ... P61175 N/A
    923170 8ydg:t (5.1) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    923171 8ydg:u (5.1) BS01 rna N/A GO:0000027 ... P60624 N/A
    923172 8ydg:v (5.1) BS01 rna N/A GO:0000027 ... P68919 N/A
    923173 8ydg:v (5.1) BS02 rna N/A GO:0000027 ... P68919 N/A
    923174 8ydg:w (5.1) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    923175 8ydg:w (5.1) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    923176 8ydg:x (5.1) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    923177 8ydg:y (5.1) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923178 8ydg:z (5.1) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    923179 8ydg:z (5.1) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    923180 8ydh:A (4.55) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    923181 8ydh:B (4.55) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    923182 8ydh:B1 (4.55) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923183 8ydh:B1 (4.55) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923184 8ydh:B1 (4.55) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923185 8ydh:B1 (4.55) BS04 MG N/A GO:0003677 ... P0A7K2 N/A
    923186 8ydh:B2 (4.55) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923187 8ydh:B2 (4.55) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923188 8ydh:B2 (4.55) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923189 8ydh:C (4.55) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    923190 8ydh:D (4.55) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    923191 8ydh:E (4.55) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    923192 8ydh:F (4.55) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    923193 8ydh:G (4.55) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    923194 8ydh:H (4.55) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    923195 8ydh:H (4.55) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    923196 8ydh:I (4.55) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    923197 8ydh:I (4.55) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    923198 8ydh:J (4.55) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    923199 8ydh:J (4.55) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    923200 8ydh:K (4.55) BS01 rna N/A GO:0002181 ... P02358 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).