SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4607 4608 4609 4610 4611 4612 4613 4614 4615 4616 4617 4618 4619 4620 4621 4622 4623 4624 4625 4626 4627 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    923201 8ydh:L (4.55) BS01 rna N/A GO:0000028 ... P02359 N/A
    923202 8ydh:L (4.55) BS02 rna N/A GO:0000028 ... P02359 N/A
    923203 8ydh:M (4.55) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    923204 8ydh:N (4.55) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    923205 8ydh:N (4.55) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    923206 8ydh:NA (4.55) BS01 rna N/A GO:0000166 ... P0AFF6 N/A
    923207 8ydh:O (4.55) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    923208 8ydh:P (4.55) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    923209 8ydh:Q (4.55) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    923210 8ydh:Q (4.55) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    923211 8ydh:R (4.55) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    923212 8ydh:S (4.55) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    923213 8ydh:T (4.55) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    923214 8ydh:T (4.55) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    923215 8ydh:U (4.55) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    923216 8ydh:V (4.55) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    923217 8ydh:W (4.55) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    923218 8ydh:X (4.55) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    923219 8ydh:Y (4.55) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    923220 8ydh:Z (4.55) BS01 rna N/A GO:0000028 ... P68679 N/A
    923221 8ydh:b (4.55) BS01 rna N/A GO:0003723 ... P0A7M9 N/A
    923222 8ydh:c (4.55) BS01 rna N/A GO:0000027 ... P60438 N/A
    923223 8ydh:d (4.55) BS01 rna N/A GO:0003735 ... N/A N/A
    923224 8ydh:e (4.55) BS01 rna N/A GO:0000027 ... P62399 N/A
    923225 8ydh:e (4.55) BS02 rna N/A GO:0000027 ... P62399 N/A
    923226 8ydh:e (4.55) BS03 rna N/A GO:0000027 ... P62399 N/A
    923227 8ydh:f (4.55) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    923228 8ydh:g (4.55) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    923229 8ydh:i (4.55) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    923230 8ydh:j (4.55) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    923231 8ydh:k (4.55) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    923232 8ydh:k (4.55) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    923233 8ydh:l (4.55) BS01 rna N/A GO:0002181 ... P02413 N/A
    923234 8ydh:m (4.55) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    923235 8ydh:m (4.55) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    923236 8ydh:m (4.55) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    923237 8ydh:n (4.55) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    923238 8ydh:o (4.55) BS01 rna N/A GO:0002181 ... P0C018 N/A
    923239 8ydh:o (4.55) BS02 rna N/A GO:0002181 ... P0C018 N/A
    923240 8ydh:p (4.55) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923241 8ydh:p (4.55) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923242 8ydh:q (4.55) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    923243 8ydh:r (4.55) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    923244 8ydh:s (4.55) BS01 rna N/A GO:0002181 ... P61175 N/A
    923245 8ydh:t (4.55) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    923246 8ydh:u (4.55) BS01 rna N/A GO:0000027 ... P60624 N/A
    923247 8ydh:v (4.55) BS01 rna N/A GO:0000027 ... P68919 N/A
    923248 8ydh:w (4.55) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    923249 8ydh:w (4.55) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    923250 8ydh:x (4.55) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    923251 8ydh:y (4.55) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923252 8ydh:z (4.55) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    923253 8ydi:A (4.6) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    923254 8ydi:B (4.6) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    923255 8ydi:B1 (4.6) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923256 8ydi:B1 (4.6) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923257 8ydi:B1 (4.6) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923258 8ydi:B1 (4.6) BS04 MG N/A GO:0003677 ... P0A7K2 N/A
    923259 8ydi:B2 (4.6) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923260 8ydi:B2 (4.6) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923261 8ydi:B2 (4.6) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923262 8ydi:C (4.6) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    923263 8ydi:D (4.6) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    923264 8ydi:E (4.6) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    923265 8ydi:F (4.6) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    923266 8ydi:G (4.6) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    923267 8ydi:H (4.6) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    923268 8ydi:H (4.6) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    923269 8ydi:I (4.6) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    923270 8ydi:I (4.6) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    923271 8ydi:J (4.6) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    923272 8ydi:J (4.6) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    923273 8ydi:K (4.6) BS01 rna N/A GO:0002181 ... P02358 N/A
    923274 8ydi:L (4.6) BS01 rna N/A GO:0000028 ... P02359 N/A
    923275 8ydi:L (4.6) BS02 rna N/A GO:0000028 ... P02359 N/A
    923276 8ydi:M (4.6) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    923277 8ydi:N (4.6) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    923278 8ydi:N (4.6) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    923279 8ydi:O (4.6) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    923280 8ydi:P (4.6) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    923281 8ydi:Q (4.6) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    923282 8ydi:Q (4.6) BS02 rna N/A GO:0000049 ... P0A7S3 N/A
    923283 8ydi:R (4.6) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    923284 8ydi:S (4.6) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    923285 8ydi:T (4.6) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    923286 8ydi:T (4.6) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    923287 8ydi:U (4.6) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    923288 8ydi:V (4.6) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    923289 8ydi:W (4.6) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    923290 8ydi:X (4.6) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    923291 8ydi:Y (4.6) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    923292 8ydi:Z (4.6) BS01 rna N/A GO:0000028 ... P68679 N/A
    923293 8ydi:b (4.6) BS01 rna N/A GO:0003723 ... P0A7M9 N/A
    923294 8ydi:c (4.6) BS01 rna N/A GO:0000027 ... P60438 N/A
    923295 8ydi:d (4.6) BS01 rna N/A GO:0003735 ... N/A N/A
    923296 8ydi:e (4.6) BS01 rna N/A GO:0000027 ... P62399 N/A
    923297 8ydi:e (4.6) BS02 rna N/A GO:0000027 ... P62399 N/A
    923298 8ydi:e (4.6) BS03 rna N/A GO:0000027 ... P62399 N/A
    923299 8ydi:f (4.6) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    923300 8ydi:g (4.6) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    923301 8ydi:i (4.6) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923302 8ydi:j (4.6) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    923303 8ydi:k (4.6) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    923304 8ydi:k (4.6) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    923305 8ydi:l (4.6) BS01 rna N/A GO:0002181 ... P02413 N/A
    923306 8ydi:m (4.6) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    923307 8ydi:m (4.6) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    923308 8ydi:m (4.6) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    923309 8ydi:n (4.6) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    923310 8ydi:o (4.6) BS01 rna N/A GO:0002181 ... P0C018 N/A
    923311 8ydi:o (4.6) BS02 rna N/A GO:0002181 ... P0C018 N/A
    923312 8ydi:p (4.6) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923313 8ydi:p (4.6) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923314 8ydi:q (4.6) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    923315 8ydi:r (4.6) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    923316 8ydi:s (4.6) BS01 rna N/A GO:0002181 ... P61175 N/A
    923317 8ydi:t (4.6) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    923318 8ydi:u (4.6) BS01 rna N/A GO:0000027 ... P60624 N/A
    923319 8ydi:v (4.6) BS01 rna N/A GO:0000027 ... P68919 N/A
    923320 8ydi:w (4.6) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    923321 8ydi:w (4.6) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    923322 8ydi:x (4.6) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    923323 8ydi:y (4.6) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923324 8ydi:z (4.6) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    923325 8ydj:0 (5.1) BS01 rna N/A GO:0003746 ... P0A6M8 N/A
    923326 8ydj:0 (5.1) BS02 rna N/A GO:0003746 ... P0A6M8 N/A
    923327 8ydj:0 (5.1) BS03 rna N/A GO:0003746 ... P0A6M8 N/A
    923328 8ydj:0 (5.1) BS04 GDP N/A GO:0003746 ... P0A6M8 N/A
    923329 8ydj:A (5.1) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    923330 8ydj:B (5.1) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    923331 8ydj:B1 (5.1) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923332 8ydj:B1 (5.1) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923333 8ydj:B1 (5.1) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923334 8ydj:B1 (5.1) BS04 MG N/A GO:0003677 ... P0A7K2 N/A
    923335 8ydj:B2 (5.1) BS01 rna N/A GO:0003677 ... P0A7K2 N/A
    923336 8ydj:B2 (5.1) BS02 dna N/A GO:0003677 ... P0A7K2 N/A
    923337 8ydj:B2 (5.1) BS03 dna N/A GO:0003677 ... P0A7K2 N/A
    923338 8ydj:C (5.1) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    923339 8ydj:D (5.1) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    923340 8ydj:E (5.1) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    923341 8ydj:F (5.1) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    923342 8ydj:G (5.1) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    923343 8ydj:H (5.1) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    923344 8ydj:H (5.1) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    923345 8ydj:I (5.1) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    923346 8ydj:I (5.1) BS02 rna N/A GO:0000028 ... P0A7V8 N/A
    923347 8ydj:J (5.1) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    923348 8ydj:J (5.1) BS02 rna N/A GO:0000028 ... P0A7W1 N/A
    923349 8ydj:K (5.1) BS01 rna N/A GO:0002181 ... P02358 N/A
    923350 8ydj:L (5.1) BS01 rna N/A GO:0000028 ... P02359 N/A
    923351 8ydj:M (5.1) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    923352 8ydj:N (5.1) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    923353 8ydj:N (5.1) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    923354 8ydj:O (5.1) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    923355 8ydj:P (5.1) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    923356 8ydj:Q (5.1) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    923357 8ydj:R (5.1) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    923358 8ydj:S (5.1) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    923359 8ydj:T (5.1) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    923360 8ydj:T (5.1) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    923361 8ydj:U (5.1) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    923362 8ydj:V (5.1) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    923363 8ydj:W (5.1) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    923364 8ydj:X (5.1) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    923365 8ydj:Y (5.1) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    923366 8ydj:Z (5.1) BS01 rna N/A GO:0000028 ... P68679 N/A
    923367 8ydj:a (5.1) BS01 rna N/A GO:0000027 ... P0A7L0 N/A
    923368 8ydj:a (5.1) BS02 rna N/A GO:0000027 ... P0A7L0 N/A
    923369 8ydj:b (5.1) BS01 rna N/A GO:0003723 ... P0A7M9 N/A
    923370 8ydj:b (5.1) BS02 rna N/A GO:0003723 ... P0A7M9 N/A
    923371 8ydj:c (5.1) BS01 rna N/A GO:0000027 ... P60438 N/A
    923372 8ydj:d (5.1) BS01 rna N/A GO:0003735 ... N/A N/A
    923373 8ydj:e (5.1) BS01 rna N/A GO:0000027 ... P62399 N/A
    923374 8ydj:e (5.1) BS02 rna N/A GO:0000027 ... P62399 N/A
    923375 8ydj:f (5.1) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    923376 8ydj:g (5.1) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    923377 8ydj:i (5.1) BS01 rna N/A GO:0000027 ... P0A7J7 N/A
    923378 8ydj:j (5.1) BS01 rna N/A GO:0003735 ... N/A N/A
    923379 8ydj:k (5.1) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    923380 8ydj:k (5.1) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    923381 8ydj:l (5.1) BS01 rna N/A GO:0002181 ... P02413 N/A
    923382 8ydj:m (5.1) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    923383 8ydj:m (5.1) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    923384 8ydj:m (5.1) BS03 rna N/A GO:0000027 ... P0ADY7 N/A
    923385 8ydj:n (5.1) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    923386 8ydj:o (5.1) BS01 rna N/A GO:0002181 ... P0C018 N/A
    923387 8ydj:o (5.1) BS02 rna N/A GO:0002181 ... P0C018 N/A
    923388 8ydj:p (5.1) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    923389 8ydj:p (5.1) BS02 rna N/A GO:0003735 ... P0A7M9 N/A
    923390 8ydj:q (5.1) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    923391 8ydj:r (5.1) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    923392 8ydj:s (5.1) BS01 rna N/A GO:0002181 ... P61175 N/A
    923393 8ydj:t (5.1) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    923394 8ydj:u (5.1) BS01 rna N/A GO:0000027 ... P60624 N/A
    923395 8ydj:v (5.1) BS01 rna N/A GO:0000027 ... P68919 N/A
    923396 8ydj:v (5.1) BS02 rna N/A GO:0000027 ... P68919 N/A
    923397 8ydj:w (5.1) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    923398 8ydj:w (5.1) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    923399 8ydj:x (5.1) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    923400 8ydj:y (5.1) BS01 rna N/A GO:0003735 ... P0A7M9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).