SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    923401 8ydj:z (5.1) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    923402 8ydj:z (5.1) BS02 rna N/A GO:0000027 ... P0AG51 N/A
    923403 8ydm:A (3.05) BS01 BCL N/A GO:0005886 ... P07503 39912559
    923404 8ydm:A (3.05) BS02 U4Z N/A GO:0005886 ... P07503 39912559
    923405 8ydm:A (3.05) BS03 BCL N/A GO:0005886 ... P07503 39912559
    923406 8ydm:A (3.05) BS04 BCL N/A GO:0005886 ... P07503 39912559
    923407 8ydm:B (3.05) BS01 BCL N/A GO:0005886 ... P09927 39912559
    923408 8ydm:B (3.05) BS02 U4Z N/A GO:0005886 ... P09927 39912559
    923409 8ydm:B (3.05) BS03 BCL N/A GO:0005886 ... P09927 39912559
    923410 8ydm:B (3.05) BS04 BCL N/A GO:0005886 ... P09927 39912559
    923411 8ydm:C (3.05) BS01 BCL N/A GO:0005506 ... P33325 39912559
    923412 8ydm:C (3.05) BS02 HEM N/A GO:0005506 ... P33325 39912559
    923413 8ydm:C (3.05) BS03 HEM N/A GO:0005506 ... P33325 39912559
    923414 8ydm:C (3.05) BS04 HEM N/A GO:0005506 ... P33325 39912559
    923415 8ydm:C (3.05) BS05 HEM N/A GO:0005506 ... P33325 39912559
    923416 8ydm:D (3.05) BS01 BCL N/A GO:0005886 ... P07503 39912559
    923417 8ydm:D (3.05) BS02 U4Z N/A GO:0005886 ... P07503 39912559
    923418 8ydm:D (3.05) BS03 BCL N/A GO:0005886 ... P07503 39912559
    923419 8ydm:D (3.05) BS04 U4Z N/A GO:0005886 ... P07503 39912559
    923420 8ydm:D (3.05) BS05 BCL N/A GO:0005886 ... P07503 39912559
    923421 8ydm:E (3.05) BS01 U4Z N/A GO:0005886 ... P09927 39912559
    923422 8ydm:E (3.05) BS02 BCL N/A GO:0005886 ... P09927 39912559
    923423 8ydm:E (3.05) BS03 BCL N/A GO:0005886 ... P09927 39912559
    923424 8ydm:F (3.05) BS01 U4Z N/A GO:0005886 ... P07503 39912559
    923425 8ydm:F (3.05) BS02 BCL N/A GO:0005886 ... P07503 39912559
    923426 8ydm:F (3.05) BS03 BCL N/A GO:0005886 ... P07503 39912559
    923427 8ydm:F (3.05) BS04 BCL N/A GO:0005886 ... P07503 39912559
    923428 8ydm:G (3.05) BS01 BCL N/A GO:0005886 ... P09927 39912559
    923429 8ydm:G (3.05) BS02 BCL N/A GO:0005886 ... P09927 39912559
    923430 8ydm:G (3.05) BS03 BCL N/A GO:0005886 ... P09927 39912559
    923431 8ydm:G (3.05) BS04 BCL N/A GO:0005886 ... P09927 39912559
    923432 8ydm:H (3.05) BS01 BCL N/A GO:0005886 ... P07503 39912559
    923433 8ydm:H (3.05) BS02 U4Z N/A GO:0005886 ... P07503 39912559
    923434 8ydm:H (3.05) BS03 BCL N/A GO:0005886 ... P07503 39912559
    923435 8ydm:H (3.05) BS04 BCL N/A GO:0005886 ... P07503 39912559
    923436 8ydm:H (3.05) BS05 U4Z N/A GO:0005886 ... P07503 39912559
    923437 8ydm:I (3.05) BS01 BCL N/A GO:0005886 ... P09927 39912559
    923438 8ydm:I (3.05) BS02 U4Z N/A GO:0005886 ... P09927 39912559
    923439 8ydm:I (3.05) BS03 BCL N/A GO:0005886 ... P09927 39912559
    923440 8ydm:I (3.05) BS04 BCL N/A GO:0005886 ... P09927 39912559
    923441 8ydm:J (3.05) BS01 BCL N/A GO:0005886 ... P07503 39912559
    923442 8ydm:J (3.05) BS02 BCL N/A GO:0005886 ... P07503 39912559
    923443 8ydm:J (3.05) BS03 U4Z N/A GO:0005886 ... P07503 39912559
    923444 8ydm:J (3.05) BS04 BCL N/A GO:0005886 ... P07503 39912559
    923445 8ydm:K (3.05) BS01 BCL N/A GO:0005886 ... P09927 39912559
    923446 8ydm:K (3.05) BS02 BCL N/A GO:0005886 ... P09927 39912559
    923447 8ydm:K (3.05) BS03 U4Z N/A GO:0005886 ... P09927 39912559
    923448 8ydm:K (3.05) BS04 BCL N/A GO:0005886 ... P09927 39912559
    923449 8ydm:L (3.05) BS01 MQE N/A GO:0005886 ... P11695 39912559
    923450 8ydm:L (3.05) BS02 BCL N/A GO:0005886 ... P11695 39912559
    923451 8ydm:L (3.05) BS03 BPH N/A GO:0005886 ... P11695 39912559
    923452 8ydm:L (3.05) BS04 BPH N/A GO:0005886 ... P11695 39912559
    923453 8ydm:L (3.05) BS05 BCL N/A GO:0005886 ... P11695 39912559
    923454 8ydm:L (3.05) BS06 MQE N/A GO:0005886 ... P11695 39912559
    923455 8ydm:L (3.05) BS07 MN N/A GO:0005886 ... P11695 39912559
    923456 8ydm:L (3.05) BS08 BPH N/A GO:0005886 ... P11695 39912559
    923457 8ydm:M (3.05) BS01 BPH N/A GO:0005886 ... P09438 39912559
    923458 8ydm:M (3.05) BS02 BCL N/A GO:0005886 ... P09438 39912559
    923459 8ydm:M (3.05) BS03 MQE N/A GO:0005886 ... P09438 39912559
    923460 8ydm:M (3.05) BS04 MN N/A GO:0005886 ... P09438 39912559
    923461 8ydm:M (3.05) BS05 BCL N/A GO:0005886 ... P09438 39912559
    923462 8ydm:M (3.05) BS06 BPH N/A GO:0005886 ... P09438 39912559
    923463 8ydm:O (3.05) BS01 BCL N/A GO:0005886 ... P07503 39912559
    923464 8ydm:O (3.05) BS02 U4Z N/A GO:0005886 ... P07503 39912559
    923465 8ydm:O (3.05) BS03 BCL N/A GO:0005886 ... P07503 39912559
    923466 8ydm:O (3.05) BS04 BCL N/A GO:0005886 ... P07503 39912559
    923467 8ydm:O (3.05) BS05 U4Z N/A GO:0005886 ... P07503 39912559
    923468 8ydm:P (3.05) BS01 BCL N/A GO:0005886 ... P09927 39912559
    923469 8ydm:P (3.05) BS02 U4Z N/A GO:0005886 ... P09927 39912559
    923470 8ydm:P (3.05) BS03 BCL N/A GO:0005886 ... P09927 39912559
    923471 8ydm:P (3.05) BS04 U4Z N/A GO:0005886 ... P09927 39912559
    923472 8ydm:P (3.05) BS05 BCL N/A GO:0005886 ... P09927 39912559
    923473 8ydm:P (3.05) BS06 U4Z N/A GO:0005886 ... P09927 39912559
    923474 8ydm:Q (3.05) BS01 BCL N/A GO:0005886 ... P07503 39912559
    923475 8ydm:Q (3.05) BS02 U4Z N/A GO:0005886 ... P07503 39912559
    923476 8ydm:Q (3.05) BS03 BCL N/A GO:0005886 ... P07503 39912559
    923477 8ydm:Q (3.05) BS04 BCL N/A GO:0005886 ... P07503 39912559
    923478 8ydm:R (3.05) BS01 BCL N/A GO:0005886 ... P09927 39912559
    923479 8ydm:R (3.05) BS02 U4Z N/A GO:0005886 ... P09927 39912559
    923480 8ydm:R (3.05) BS03 U4Z N/A GO:0005886 ... P09927 39912559
    923481 8ydm:R (3.05) BS04 BCL N/A GO:0005886 ... P09927 39912559
    923482 8ydm:R (3.05) BS05 BCL N/A GO:0005886 ... P09927 39912559
    923483 8ydn:A (2.04) BS01 C2E N/A GO:0000045 ... K1QMA0 N/A
    923484 8ye0:A (1.94) BS01 PIS N/A N/A A0ACD6BAL7 38837490
    923485 8ye0:B (1.94) BS01 PIS N/A N/A A0ACD6BAL7 38837490
    923486 8ye0:C (1.94) BS01 PIS N/A N/A A0ACD6BAL7 38837490
    923487 8ye0:D (1.94) BS01 PIS N/A N/A A0ACD6BAL7 38837490
    923488 8ye4:A (3.2) BS01 peptide N/A GO:0000139 ... Q6IVJ7 39002680
    923489 8ye4:C (3.2) BS01 peptide N/A GO:0000139 ... Q6IVJ7 39002680
    923490 8ye4:G (3.2) BS01 peptide N/A N/A N/A 39002680
    923491 8ye4:H (3.2) BS01 peptide N/A N/A N/A 39002680
    923492 8ye4:I (3.2) BS01 peptide N/A N/A N/A 39002680
    923493 8ye4:J (3.2) BS01 peptide N/A N/A N/A 39002680
    923494 8ye6:A (2.95) BS01 rna N/A GO:0003676 ... Q99ZW2 38842649
    923495 8ye6:B (2.95) BS01 rna N/A N/A N/A 38842649
    923496 8ye8:A (1.90001) BS01 peptide N/A N/A Q3UHR0 40592879
    923497 8ye9:A (3.43) BS01 rna N/A GO:0003676 ... Q99ZW2 38842649
    923498 8ye9:B (3.43) BS01 rna N/A N/A N/A 38842649
    923499 8yeb:A (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923500 8yeb:B (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923501 8yeb:C (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923502 8yeb:D (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923503 8yeb:E (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923504 8yeb:F (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923505 8yeb:G (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923506 8yeb:H (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923507 8yeb:I (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923508 8yeb:J (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923509 8yeb:K (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923510 8yeb:L (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923511 8yeb:M (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923512 8yeb:N (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923513 8yeb:O (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923514 8yeb:P (2.2) BS01 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923515 8yec:A (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923516 8yec:A (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923517 8yec:A (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923518 8yec:B (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923519 8yec:B (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923520 8yec:B (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923521 8yec:C (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923522 8yec:C (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923523 8yec:C (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923524 8yec:D (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923525 8yec:D (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923526 8yec:D (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923527 8yec:E (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923528 8yec:E (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923529 8yec:E (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923530 8yec:F (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923531 8yec:F (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923532 8yec:F (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923533 8yec:G (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923534 8yec:G (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923535 8yec:G (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923536 8yec:H (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923537 8yec:H (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923538 8yec:H (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923539 8yec:I (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923540 8yec:I (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923541 8yec:I (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923542 8yec:J (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923543 8yec:J (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923544 8yec:J (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923545 8yec:K (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923546 8yec:K (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923547 8yec:K (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923548 8yec:L (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923549 8yec:L (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923550 8yec:L (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923551 8yec:M (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923552 8yec:M (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923553 8yec:M (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923554 8yec:N (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923555 8yec:N (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923556 8yec:N (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923557 8yec:O (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923558 8yec:O (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923559 8yec:O (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923560 8yec:P (2.5) BS01 PSJ N/A GO:0005975 ... A0A1L7NQ96 N/A
    923561 8yec:P (2.5) BS02 FUD N/A GO:0005975 ... A0A1L7NQ96 N/A
    923562 8yec:P (2.5) BS03 MG N/A GO:0005975 ... A0A1L7NQ96 N/A
    923563 8yee:A (2.37) BS01 CHL N/A GO:0009765 ... P12333 39346626
    923564 8yee:A (2.37) BS02 CLA N/A GO:0009765 ... P12333 39346626
    923565 8yee:A (2.37) BS03 CLA N/A GO:0009765 ... P12333 39346626
    923566 8yee:A (2.37) BS04 CLA N/A GO:0009765 ... P12333 39346626
    923567 8yee:A (2.37) BS05 CHL N/A GO:0009765 ... P12333 39346626
    923568 8yee:A (2.37) BS06 CHL N/A GO:0009765 ... P12333 39346626
    923569 8yee:A (2.37) BS07 CHL N/A GO:0009765 ... P12333 39346626
    923570 8yee:A (2.37) BS08 CHL N/A GO:0009765 ... P12333 39346626
    923571 8yee:A (2.37) BS09 CHL N/A GO:0009765 ... P12333 39346626
    923572 8yee:A (2.37) BS10 CLA N/A GO:0009765 ... P12333 39346626
    923573 8yee:A (2.37) BS11 CLA N/A GO:0009765 ... P12333 39346626
    923574 8yee:A (2.37) BS12 CLA N/A GO:0009765 ... P12333 39346626
    923575 8yee:A (2.37) BS13 CLA N/A GO:0009765 ... P12333 39346626
    923576 8yee:A (2.37) BS14 CLA N/A GO:0009765 ... P12333 39346626
    923577 8yee:A (2.37) BS15 A1LXP N/A GO:0009765 ... P12333 39346626
    923578 8yee:A (2.37) BS16 A1LXP N/A GO:0009765 ... P12333 39346626
    923579 8yee:A (2.37) BS17 CHL N/A GO:0009765 ... P12333 39346626
    923580 8yee:B (2.37) BS01 CHL N/A GO:0009765 ... P12333 39346626
    923581 8yee:B (2.37) BS02 CLA N/A GO:0009765 ... P12333 39346626
    923582 8yee:B (2.37) BS03 CLA N/A GO:0009765 ... P12333 39346626
    923583 8yee:B (2.37) BS04 CLA N/A GO:0009765 ... P12333 39346626
    923584 8yee:B (2.37) BS05 CHL N/A GO:0009765 ... P12333 39346626
    923585 8yee:B (2.37) BS06 CHL N/A GO:0009765 ... P12333 39346626
    923586 8yee:B (2.37) BS07 CHL N/A GO:0009765 ... P12333 39346626
    923587 8yee:B (2.37) BS08 CHL N/A GO:0009765 ... P12333 39346626
    923588 8yee:B (2.37) BS09 CHL N/A GO:0009765 ... P12333 39346626
    923589 8yee:B (2.37) BS10 CLA N/A GO:0009765 ... P12333 39346626
    923590 8yee:B (2.37) BS11 CLA N/A GO:0009765 ... P12333 39346626
    923591 8yee:B (2.37) BS12 CLA N/A GO:0009765 ... P12333 39346626
    923592 8yee:B (2.37) BS13 CLA N/A GO:0009765 ... P12333 39346626
    923593 8yee:B (2.37) BS14 CLA N/A GO:0009765 ... P12333 39346626
    923594 8yee:B (2.37) BS15 A1LXP N/A GO:0009765 ... P12333 39346626
    923595 8yee:B (2.37) BS16 A1LXP N/A GO:0009765 ... P12333 39346626
    923596 8yee:B (2.37) BS17 CHL N/A GO:0009765 ... P12333 39346626
    923597 8yee:C (2.37) BS01 CHL N/A GO:0009765 ... P12333 39346626
    923598 8yee:C (2.37) BS02 CHL N/A GO:0009765 ... P12333 39346626
    923599 8yee:C (2.37) BS03 CLA N/A GO:0009765 ... P12333 39346626
    923600 8yee:C (2.37) BS04 CLA N/A GO:0009765 ... P12333 39346626

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).