SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    923601 8yee:C (2.37) BS05 CLA N/A GO:0009765 ... P12333 39346626
    923602 8yee:C (2.37) BS06 CHL N/A GO:0009765 ... P12333 39346626
    923603 8yee:C (2.37) BS07 CHL N/A GO:0009765 ... P12333 39346626
    923604 8yee:C (2.37) BS08 CHL N/A GO:0009765 ... P12333 39346626
    923605 8yee:C (2.37) BS09 CHL N/A GO:0009765 ... P12333 39346626
    923606 8yee:C (2.37) BS10 CHL N/A GO:0009765 ... P12333 39346626
    923607 8yee:C (2.37) BS11 CLA N/A GO:0009765 ... P12333 39346626
    923608 8yee:C (2.37) BS12 CLA N/A GO:0009765 ... P12333 39346626
    923609 8yee:C (2.37) BS13 CLA N/A GO:0009765 ... P12333 39346626
    923610 8yee:C (2.37) BS14 CLA N/A GO:0009765 ... P12333 39346626
    923611 8yee:C (2.37) BS15 CLA N/A GO:0009765 ... P12333 39346626
    923612 8yee:C (2.37) BS16 A1LXP N/A GO:0009765 ... P12333 39346626
    923613 8yee:C (2.37) BS17 A1LXP N/A GO:0009765 ... P12333 39346626
    923614 8yej:A (2.86) BS01 RET N/A GO:0016020 ... L1K1K8 39232582
    923615 8yek:A (2.73) BS01 RET N/A GO:0016020 ... L1K1K8 39232582
    923616 8yel:A (2.71) BS01 RET N/A GO:0016020 ... A0A3G1I4H9 39232582
    923617 8yem:A (2.74) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    923618 8yem:A (2.74) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    923619 8yem:A (2.74) BS03 MG N/A GO:0000226 ... Q2XVP4 N/A
    923620 8yem:B (2.74) BS01 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    923621 8yem:B (2.74) BS02 MG N/A GO:0003924 ... A0A287AGU7 N/A
    923622 8yem:B (2.74) BS03 A1D6D N/A GO:0003924 ... A0A287AGU7 N/A
    923623 8yem:C (2.74) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    923624 8yem:C (2.74) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    923625 8yem:C (2.74) BS03 MG N/A GO:0000226 ... Q2XVP4 N/A
    923626 8yem:D (2.74) BS01 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    923627 8yem:D (2.74) BS02 A1D6D N/A GO:0003924 ... A0A287AGU7 N/A
    923628 8yem:F (2.74) BS01 ACP N/A GO:0000226 ... A0A8C9FGJ1 N/A
    923629 8yeo:A (3.44) BS01 rna N/A N/A A0AAX7FM22 39047725
    923630 8yeo:A (3.44) BS02 rna N/A N/A A0AAX7FM22 39047725
    923631 8yeo:B (3.44) BS01 rna N/A GO:0004519 ... A0AAX7FM27 39047725
    923632 8yeo:D (3.44) BS01 rna N/A N/A A0AAX7FM28 39047725
    923633 8yeo:D (3.44) BS02 rna N/A N/A A0AAX7FM28 39047725
    923634 8yeo:E (3.44) BS01 rna N/A N/A A0AAX7FM28 39047725
    923635 8yeo:E (3.44) BS02 rna N/A N/A A0AAX7FM28 39047725
    923636 8yeo:F (3.44) BS01 rna N/A N/A A0AAX7FM28 39047725
    923637 8yeo:F (3.44) BS02 rna N/A N/A A0AAX7FM28 39047725
    923638 8yeo:G (3.44) BS01 rna N/A N/A A0AAX7FM28 39047725
    923639 8yeo:G (3.44) BS02 rna N/A N/A A0AAX7FM28 39047725
    923640 8yeo:H (3.44) BS01 rna N/A N/A A0AAX7FM28 39047725
    923641 8yeo:H (3.44) BS02 rna N/A N/A A0AAX7FM28 39047725
    923642 8yeo:I (3.44) BS01 rna N/A N/A A0AAX7FM28 39047725
    923643 8yeo:I (3.44) BS02 rna N/A N/A A0AAX7FM28 39047725
    923644 8yeo:J (3.44) BS01 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    923645 8yeo:J (3.44) BS02 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    923646 8yeo:J (3.44) BS03 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    923647 8yer:A (2.71) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    923648 8yer:A (2.71) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    923649 8yer:B (2.71) BS01 A1D6E N/A GO:0003924 ... A0A287AGU7 N/A
    923650 8yer:B (2.71) BS02 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    923651 8yer:B (2.71) BS03 MG N/A GO:0003924 ... A0A287AGU7 N/A
    923652 8yer:C (2.71) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    923653 8yer:C (2.71) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    923654 8yer:C (2.71) BS03 MG N/A GO:0000226 ... Q2XVP4 N/A
    923655 8yer:C (2.71) BS04 A1D6E N/A GO:0000226 ... Q2XVP4 N/A
    923656 8yer:D (2.71) BS01 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    923657 8yer:D (2.71) BS02 A1D6E N/A GO:0003924 ... A0A287AGU7 N/A
    923658 8yer:F (2.71) BS01 ACP N/A GO:0000226 ... A0A8C9FGJ1 N/A
    923659 8yes:A (2.6) BS01 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923660 8yes:A (2.6) BS02 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923661 8yes:B (2.6) BS01 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923662 8yes:B (2.6) BS02 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923663 8yes:C (2.6) BS01 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923664 8yes:C (2.6) BS02 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923665 8yes:C (2.6) BS03 PO4 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923666 8yes:D (2.6) BS01 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923667 8yes:D (2.6) BS02 PO4 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923668 8yes:E (2.6) BS01 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923669 8yes:F (2.6) BS01 B12 N/A GO:0000166 ... A0A1I3YTB1 39326622
    923670 8yet:A (4.16) BS01 IHP N/A GO:0016020 ... Q9UBH6 39325866
    923671 8yet:A (4.16) BS02 IHP N/A GO:0016020 ... Q9UBH6 39325866
    923672 8yet:B (4.16) BS01 IHP N/A GO:0016020 ... Q9UBH6 39325866
    923673 8yet:B (4.16) BS02 IHP N/A GO:0016020 ... Q9UBH6 39325866
    923674 8yeu:A (3.05) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    923675 8yeu:A (3.05) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    923676 8yeu:B (3.05) BS01 A1D6L N/A GO:0003924 ... A0A287AGU7 N/A
    923677 8yeu:B (3.05) BS02 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    923678 8yeu:B (3.05) BS03 MG N/A GO:0003924 ... A0A287AGU7 N/A
    923679 8yeu:C (3.05) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    923680 8yeu:C (3.05) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    923681 8yeu:C (3.05) BS03 MG N/A GO:0000226 ... Q2XVP4 N/A
    923682 8yeu:D (3.05) BS01 A1D6L N/A GO:0003924 ... A0A287AGU7 N/A
    923683 8yeu:D (3.05) BS02 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    923684 8yeu:F (3.05) BS01 ACP N/A GO:0000226 ... A0A8C9FGJ1 N/A
    923685 8yev:A (2.25152) BS01 CUE N/A GO:0004672 ... Q13627 39481728
    923686 8yev:B (2.25152) BS01 CUE N/A GO:0004672 ... Q13627 39481728
    923687 8yey:A (2.0) BS01 dna N/A N/A Q15650 38870938
    923688 8yey:C (2.0) BS01 dna N/A N/A Q15650 38870938
    923689 8yez:A (3.3) BS01 L9Q N/A GO:0005261 ... Q92508 40668110
    923690 8yez:A (3.3) BS02 L9Q N/A GO:0005261 ... Q92508 40668110
    923691 8yez:B (3.3) BS01 L9Q N/A GO:0005261 ... Q92508 40668110
    923692 8yez:B (3.3) BS02 L9Q N/A GO:0005261 ... Q92508 40668110
    923693 8yez:C (3.3) BS01 L9Q N/A GO:0005261 ... Q92508 40668110
    923694 8yez:C (3.3) BS02 L9Q N/A GO:0005261 ... Q92508 40668110
    923695 8yf1:A (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 38773074
    923696 8yf1:B (3.38) BS01 VLX ? GO:0005783 ... Q7L0J3 38773074
    923697 8yf2:A (2.64) BS01 ZN N/A GO:0006508 ... B4XEP4 39637248
    923698 8yf3:A (1.9) BS01 GEK N/A GO:0008168 ... N/A 41354841
    923699 8yf4:A (3.41) BS01 Y01 N/A GO:0016020 ... Q9UBH6 39325866
    923700 8yf4:B (3.41) BS01 Y01 N/A GO:0016020 ... Q9UBH6 39325866
    923701 8yf6:A (3.23) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923702 8yf6:A (3.23) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923703 8yf6:B (3.23) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923704 8yf6:B (3.23) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923705 8yf6:C (3.23) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923706 8yf6:C (3.23) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923707 8yf7:A (2.82) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923708 8yf7:A (2.82) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923709 8yf7:B (2.82) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923710 8yf7:B (2.82) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923711 8yf7:C (2.82) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923712 8yf7:C (2.82) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923713 8yf8:A (3.52) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923714 8yf8:B (3.52) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923715 8yf8:B (3.52) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923716 8yf8:C (3.52) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923717 8yf8:C (3.52) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923718 8yf9:A (3.12) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923719 8yf9:A (3.12) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923720 8yf9:B (3.12) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923721 8yf9:B (3.12) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923722 8yf9:C (3.12) BS01 CA N/A GO:0019028 ... Q9E6H7 39087906
    923723 8yf9:C (3.12) BS02 CA N/A GO:0019028 ... Q9E6H7 39087906
    923724 8yfc:A (3.2) BS01 peptide N/A GO:0005261 ... Q92508 40668110
    923725 8yfc:A (3.2) BS02 L9Q N/A GO:0005261 ... Q92508 40668110
    923726 8yfc:A (3.2) BS03 L9Q N/A GO:0005261 ... Q92508 40668110
    923727 8yfc:B (3.2) BS01 peptide N/A GO:0005261 ... Q92508 40668110
    923728 8yfc:B (3.2) BS02 L9Q N/A GO:0005261 ... Q92508 40668110
    923729 8yfc:B (3.2) BS03 L9Q N/A GO:0005261 ... Q92508 40668110
    923730 8yfc:D (3.2) BS01 peptide N/A GO:0005261 ... Q92508 40668110
    923731 8yfc:D (3.2) BS02 L9Q N/A GO:0005261 ... Q92508 40668110
    923732 8yfc:D (3.2) BS03 L9Q N/A GO:0005261 ... Q92508 40668110
    923733 8yfg:A (4.5) BS01 peptide N/A GO:0005261 ... Q92508 40668110
    923734 8yfg:B (4.5) BS01 peptide N/A GO:0005261 ... Q92508 40668110
    923735 8yfg:D (4.5) BS01 peptide N/A GO:0005261 ... Q92508 40668110
    923736 8yfi:A (2.02) BS01 dna N/A N/A Q15650 38870938
    923737 8yfj:A (1.84) BS01 dna N/A N/A Q15650 38870938
    923738 8yfk:A (2.0) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923739 8yfk:A (2.0) BS02 MG N/A GO:0000045 ... Q8TDY2 39059492
    923740 8yfk:C (2.0) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923741 8yfk:C (2.0) BS02 MG N/A GO:0000045 ... Q8TDY2 39059492
    923742 8yfk:E (2.0) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923743 8yfk:G (2.0) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923744 8yfl:A (1.5) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923745 8yfl:C (1.5) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923746 8yfm:A (1.5) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923747 8yfm:D (1.5) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923748 8yfn:A (2.3) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923749 8yfn:A (2.3) BS02 MG N/A GO:0000045 ... Q8TDY2 39059492
    923750 8yfn:C (2.3) BS01 peptide N/A GO:0000045 ... Q8TDY2 39059492
    923751 8yfn:C (2.3) BS02 MG N/A GO:0000045 ... Q8TDY2 39059492
    923752 8yfp:A (2.45) BS01 ZN N/A GO:0004553 ... A7MSF4 40835009
    923753 8yfp:A (2.45) BS02 MG N/A GO:0004553 ... A7MSF4 40835009
    923754 8yfp:A (2.45) BS03 MG N/A GO:0004553 ... A7MSF4 40835009
    923755 8yfp:B (2.45) BS01 ZN N/A GO:0004553 ... A7MSF4 40835009
    923756 8yfp:B (2.45) BS02 CA N/A GO:0004553 ... A7MSF4 40835009
    923757 8yfp:B (2.45) BS03 CA N/A GO:0004553 ... A7MSF4 40835009
    923758 8yfq:A (3.3) BS01 dna N/A GO:0000785 ... C4R4Y0 39245712
    923759 8yfq:A (3.3) BS02 dna N/A GO:0000785 ... C4R4Y0 39245712
    923760 8yfq:A (3.3) BS03 rna N/A GO:0000785 ... C4R4Y0 39245712
    923761 8yfq:A (3.3) BS04 ZN N/A GO:0000785 ... C4R4Y0 39245712
    923762 8yfq:A (3.3) BS05 ZN N/A GO:0000785 ... C4R4Y0 39245712
    923763 8yfq:A (3.3) BS06 MG N/A GO:0000785 ... C4R4Y0 39245712
    923764 8yfq:B (3.3) BS01 dna N/A GO:0001172 ... C4QZQ7 39245712
    923765 8yfq:B (3.3) BS02 rna N/A GO:0001172 ... C4QZQ7 39245712
    923766 8yfq:B (3.3) BS03 ZN N/A GO:0001172 ... C4QZQ7 39245712
    923767 8yfq:C (3.3) BS01 ZN N/A GO:0000428 ... C4R7L2 39245712
    923768 8yfq:E (3.3) BS01 dna N/A GO:0001172 ... C4R3P8 39245712
    923769 8yfq:E (3.3) BS02 dna N/A GO:0001172 ... C4R3P8 39245712
    923770 8yfq:I (3.3) BS01 ZN N/A GO:0001172 ... C4QY79 39245712
    923771 8yfq:I (3.3) BS02 ZN N/A GO:0001172 ... C4QY79 39245712
    923772 8yfq:J (3.3) BS01 ZN N/A GO:0003677 ... C4R009 39245712
    923773 8yfq:L (3.3) BS01 ZN N/A GO:0003677 ... C4QWA8 39245712
    923774 8yfq:R (3.3) BS01 rna N/A GO:0000448 ... C4R5R1 39245712
    923775 8yfr:A (3.4) BS01 ZN N/A GO:0000785 ... C4R4Y0 39245712
    923776 8yfr:A (3.4) BS02 ZN N/A GO:0000785 ... C4R4Y0 39245712
    923777 8yfr:A (3.4) BS03 MG N/A GO:0000785 ... C4R4Y0 39245712
    923778 8yfr:B (3.4) BS01 ZN N/A GO:0001172 ... C4QZQ7 39245712
    923779 8yfr:C (3.4) BS01 ZN N/A GO:0000428 ... C4R7L2 39245712
    923780 8yfr:I (3.4) BS01 ZN N/A GO:0001172 ... C4QY79 39245712
    923781 8yfr:I (3.4) BS02 ZN N/A GO:0001172 ... C4QY79 39245712
    923782 8yfr:J (3.4) BS01 ZN N/A GO:0003677 ... C4R009 39245712
    923783 8yfr:L (3.4) BS01 ZN N/A GO:0003677 ... C4QWA8 39245712
    923784 8yfs:R (2.8) BS01 A1D6H N/A GO:0004930 ... A0A9L0JPP9 N/A
    923785 8yft:A (3.16) BS01 ZN N/A GO:0006508 ... B4XEP4 39637248
    923786 8yg7:A (2.09) BS01 A1D6U N/A GO:0003677 ... P02768 N/A
    923787 8yg7:A (2.09) BS02 IMN N/A GO:0003677 ... P02768 N/A
    923788 8yg7:I (2.09) BS01 A1D6U N/A GO:0003677 ... P02768 N/A
    923789 8yg7:I (2.09) BS02 IMN N/A GO:0003677 ... P02768 N/A
    923790 8ygd:0 (2.84) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    923791 8ygd:0 (2.84) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    923792 8ygd:0 (2.84) BS03 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    923793 8ygd:0 (2.84) BS04 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    923794 8ygd:1 (2.84) BS01 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    923795 8ygd:1 (2.84) BS02 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    923796 8ygd:1 (2.84) BS03 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    923797 8ygd:2 (2.84) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    923798 8ygd:2 (2.84) BS02 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    923799 8ygd:2 (2.84) BS03 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    923800 8ygd:3 (2.84) BS01 SPO N/A GO:0005886 ... A0A2T4JA00 39383221

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).