SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    923801 9c3d:A (1.85) BS01 ZN N/A GO:0008270 ... C6W709 N/A
    923802 9c3d:A (1.85) BS02 ZN N/A GO:0008270 ... C6W709 N/A
    923803 9c3e:A (3.5) BS01 peptide N/A GO:0002250 ... P01848 37662363
    923804 9c3e:A (3.5) BS02 CLR N/A GO:0002250 ... P01848 37662363
    923805 9c3e:B (3.5) BS01 peptide N/A N/A P0DTU4 37662363
    923806 9c3e:B (3.5) BS02 CLR N/A N/A P0DTU4 37662363
    923807 9c3e:D (3.5) BS01 peptide N/A N/A P04234 37662363
    923808 9c3e:E (3.5) BS01 peptide N/A N/A P07766 37662363
    923809 9c3h:L8 (2.0) BS01 rna N/A GO:0000027 ... P46777 39571015
    923810 9c3h:L8 (2.0) BS02 rna N/A GO:0000027 ... P46777 39571015
    923811 9c3h:LB (2.0) BS01 rna N/A GO:0002181 ... P39023 39571015
    923812 9c3h:LC (2.0) BS01 rna N/A GO:0002181 ... P36578 39571015
    923813 9c3h:LC (2.0) BS02 rna N/A GO:0002181 ... P36578 39571015
    923814 9c3h:LC (2.0) BS03 peptide N/A GO:0002181 ... P36578 39571015
    923815 9c3h:LD (2.0) BS01 rna N/A GO:0002181 ... P62917 39571015
    923816 9c3h:LD (2.0) BS02 rna N/A GO:0002181 ... P62917 39571015
    923817 9c3h:LD (2.0) BS03 MG N/A GO:0002181 ... P62917 39571015
    923818 9c3h:LD (2.0) BS04 MG N/A GO:0002181 ... P62917 39571015
    923819 9c3h:LE (2.0) BS01 rna N/A GO:0002181 ... P61254 39571015
    923820 9c3h:LE (2.0) BS02 rna N/A GO:0002181 ... P61254 39571015
    923821 9c3h:LF (2.0) BS01 rna N/A GO:0000463 ... P18124 39571015
    923822 9c3h:LF (2.0) BS02 rna N/A GO:0000463 ... P18124 39571015
    923823 9c3h:LG (2.0) BS01 rna N/A GO:0000470 ... P62424 39571015
    923824 9c3h:LG (2.0) BS02 rna N/A GO:0000470 ... P62424 39571015
    923825 9c3h:LH (2.0) BS01 rna N/A GO:0002181 ... P32969 39571015
    923826 9c3h:LI (2.0) BS01 rna N/A GO:0002181 ... P62910 39571015
    923827 9c3h:LI (2.0) BS02 MG N/A GO:0002181 ... P62910 39571015
    923828 9c3h:LJ (2.0) BS01 rna N/A GO:0000027 ... P62913 39571015
    923829 9c3h:LJ (2.0) BS02 rna N/A GO:0000027 ... P62913 39571015
    923830 9c3h:LJ (2.0) BS03 rna N/A GO:0000027 ... P62913 39571015
    923831 9c3h:LK (2.0) BS01 rna N/A GO:0002181 ... Q02878 39571015
    923832 9c3h:LM (2.0) BS01 rna N/A GO:0002181 ... P50914 39571015
    923833 9c3h:LN (2.0) BS01 rna N/A GO:0002181 ... P61313 39571015
    923834 9c3h:LN (2.0) BS02 rna N/A GO:0002181 ... P61313 39571015
    923835 9c3h:LO (2.0) BS01 rna N/A GO:0000463 ... P42766 39571015
    923836 9c3h:LO (2.0) BS02 rna N/A GO:0000463 ... P42766 39571015
    923837 9c3h:LP (2.0) BS01 rna N/A GO:0002181 ... P61927 39571015
    923838 9c3h:LP (2.0) BS02 rna N/A GO:0002181 ... P61927 39571015
    923839 9c3h:LP (2.0) BS03 ZN N/A GO:0002181 ... P61927 39571015
    923840 9c3h:LQ (2.0) BS01 rna N/A GO:0001824 ... P26373 39571015
    923841 9c3h:LQ (2.0) BS02 rna N/A GO:0001824 ... P26373 39571015
    923842 9c3h:LR (2.0) BS01 rna N/A GO:0002181 ... P84098 39571015
    923843 9c3h:LR (2.0) BS02 rna N/A GO:0002181 ... P84098 39571015
    923844 9c3h:LS (2.0) BS01 rna N/A GO:0002181 ... Q02543 39571015
    923845 9c3h:LS (2.0) BS02 rna N/A GO:0002181 ... Q02543 39571015
    923846 9c3h:LT (2.0) BS01 rna N/A GO:0002181 ... P46778 39571015
    923847 9c3h:LT (2.0) BS02 rna N/A GO:0002181 ... P46778 39571015
    923848 9c3h:LU (2.0) BS01 rna N/A GO:0002181 ... P62891 39571015
    923849 9c3h:LU (2.0) BS02 rna N/A GO:0002181 ... P62891 39571015
    923850 9c3h:LV (2.0) BS01 rna N/A GO:0000122 ... P62829 39571015
    923851 9c3h:LW (2.0) BS01 rna N/A GO:0000027 ... P83731 39571015
    923852 9c3h:LW (2.0) BS02 rna N/A GO:0000027 ... P83731 39571015
    923853 9c3h:LY (2.0) BS01 rna N/A GO:0002181 ... P40429 39571015
    923854 9c3h:LZ (2.0) BS01 rna N/A GO:0002181 ... P61353 39571015
    923855 9c3h:La (2.0) BS01 rna N/A GO:0002181 ... P46776 39571015
    923856 9c3h:Lb (2.0) BS01 rna N/A GO:0002181 ... P47914 39571015
    923857 9c3h:Lc (2.0) BS01 rna N/A GO:0002181 ... P62888 39571015
    923858 9c3h:Ld (2.0) BS01 rna N/A GO:0002181 ... P62899 39571015
    923859 9c3h:Le (2.0) BS01 rna N/A GO:0002181 ... P83881 39571015
    923860 9c3h:Le (2.0) BS02 ZN N/A GO:0002181 ... P83881 39571015
    923861 9c3h:Lf (2.0) BS01 rna N/A GO:0000049 ... P18077 39571015
    923862 9c3h:Lg (2.0) BS01 rna N/A GO:0002181 ... P49207 39571015
    923863 9c3h:Lg (2.0) BS02 ZN N/A GO:0002181 ... P49207 39571015
    923864 9c3h:Lh (2.0) BS01 rna N/A GO:0002181 ... P18621 39571015
    923865 9c3h:Lh (2.0) BS02 rna N/A GO:0002181 ... P18621 39571015
    923866 9c3h:Lh (2.0) BS03 peptide N/A GO:0002181 ... P18621 39571015
    923867 9c3h:Li (2.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 39571015
    923868 9c3h:Lj (2.0) BS01 rna N/A GO:0002181 ... Q07020 39571015
    923869 9c3h:Lk (2.0) BS01 rna N/A GO:0001501 ... P63173 39571015
    923870 9c3h:Ll (2.0) BS01 rna N/A GO:0002181 ... P46779 39571015
    923871 9c3h:Lm (2.0) BS01 rna N/A GO:0002181 ... P35268 39571015
    923872 9c3h:Ln (2.0) BS01 rna N/A GO:0002181 ... P62750 39571015
    923873 9c3h:Ln (2.0) BS02 rna N/A GO:0002181 ... P62750 39571015
    923874 9c3h:Lo (2.0) BS01 rna N/A N/A P62987 39571015
    923875 9c3h:Lo (2.0) BS02 ZN N/A N/A P62987 39571015
    923876 9c3h:Lp (2.0) BS01 rna N/A GO:0002181 ... P61513 39571015
    923877 9c3h:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 39571015
    923878 9c3h:Lz (2.0) BS01 rna N/A GO:0000122 ... P27635 39571015
    923879 9c3h:Lz (2.0) BS02 rna N/A GO:0000122 ... P27635 39571015
    923880 9c3h:Lz (2.0) BS03 rna N/A GO:0000122 ... P27635 39571015
    923881 9c3h:S1 (2.0) BS01 rna N/A GO:0002181 ... P61247 39571015
    923882 9c3h:SA (2.0) BS01 rna N/A GO:0000028 ... P08865 39571015
    923883 9c3h:SB (2.0) BS01 rna N/A N/A O75175 39571015
    923884 9c3h:SB (2.0) BS02 rna N/A N/A O75175 39571015
    923885 9c3h:SB (2.0) BS03 rna N/A N/A O75175 39571015
    923886 9c3h:SC (2.0) BS01 rna N/A GO:0002181 ... P15880 39571015
    923887 9c3h:SD (2.0) BS01 rna N/A GO:0000028 ... P46782 39571015
    923888 9c3h:SE (2.0) BS01 rna N/A GO:0002181 ... P62701 39571015
    923889 9c3h:SG (2.0) BS01 rna N/A GO:0000082 ... P62753 39571015
    923890 9c3h:SH (2.0) BS01 rna N/A GO:0001843 ... P62081 39571015
    923891 9c3h:SI (2.0) BS01 rna N/A GO:0000462 ... P62241 39571015
    923892 9c3h:SI (2.0) BS02 rna N/A GO:0000462 ... P62241 39571015
    923893 9c3h:SJ (2.0) BS01 rna N/A GO:0002181 ... P46781 39571015
    923894 9c3h:SK (2.0) BS01 rna N/A GO:0000977 ... P23396 39571015
    923895 9c3h:SL (2.0) BS01 rna N/A GO:0002181 ... P62280 39571015
    923896 9c3h:SM (2.0) BS01 rna N/A GO:0002181 ... P46783 39571015
    923897 9c3h:SN (2.0) BS01 rna N/A GO:0002181 ... P62277 39571015
    923898 9c3h:SN (2.0) BS02 rna N/A GO:0002181 ... P62277 39571015
    923899 9c3h:SO (2.0) BS01 rna N/A GO:0000028 ... P62263 39571015
    923900 9c3h:SP (2.0) BS01 rna N/A GO:0000028 ... P62841 39571015
    923901 9c3h:SP (2.0) BS02 rna N/A GO:0000028 ... P62841 39571015
    923902 9c3h:SQ (2.0) BS01 rna N/A GO:0000462 ... P62249 39571015
    923903 9c3h:SS (2.0) BS01 rna N/A GO:0002181 ... P08708 39571015
    923904 9c3h:ST (2.0) BS01 rna N/A GO:0002181 ... P62269 39571015
    923905 9c3h:ST (2.0) BS02 rna N/A GO:0002181 ... P62269 39571015
    923906 9c3h:ST (2.0) BS03 MG N/A GO:0002181 ... P62269 39571015
    923907 9c3h:SU (2.0) BS01 rna N/A GO:0000028 ... P39019 39571015
    923908 9c3h:SW (2.0) BS01 rna N/A GO:0002181 ... P62244 39571015
    923909 9c3h:SX (2.0) BS01 rna N/A GO:0002181 ... P62266 39571015
    923910 9c3h:SY (2.0) BS01 rna N/A GO:0002181 ... P62847 39571015
    923911 9c3h:SZ (2.0) BS01 rna N/A GO:0002181 ... P60866 39571015
    923912 9c3h:Sa (2.0) BS01 rna N/A GO:0002181 ... P62854 39571015
    923913 9c3h:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 39571015
    923914 9c3h:Sb (2.0) BS01 rna N/A GO:0000028 ... P42677 39571015
    923915 9c3h:Sc (2.0) BS01 rna N/A GO:0002181 ... P62851 39571015
    923916 9c3h:Sc (2.0) BS02 rna N/A GO:0002181 ... P62851 39571015
    923917 9c3h:Sd (2.0) BS01 rna N/A GO:0000028 ... P62857 39571015
    923918 9c3h:Se (2.0) BS01 rna N/A GO:0002181 ... P62861 39571015
    923919 9c3h:Sf (2.0) BS01 rna N/A GO:0002181 ... P62273 39571015
    923920 9c3h:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62273 39571015
    923921 9c3h:Sg (2.0) BS01 rna N/A GO:0001891 ... P63244 39571015
    923922 9c3h:Sy (2.0) BS01 rna N/A GO:0002181 ... P25398 39571015
    923923 9c3h:Sz (2.0) BS01 rna N/A GO:0002181 ... P62979 39571015
    923924 9c3h:Sz (2.0) BS02 ZN N/A GO:0002181 ... P62979 39571015
    923925 9c3i:S (3.1) BS01 rna N/A N/A O75175 39571015
    923926 9c3s:A (2.16) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923927 9c3s:A (2.16) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923928 9c3s:A (2.16) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923929 9c3s:A (2.16) BS04 FRU N/A GO:0003676 ... B4EFK1 39244607
    923930 9c3s:A (2.16) BS05 SFG N/A GO:0003676 ... B4EFK1 39244607
    923931 9c3s:B (2.16) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923932 9c3s:B (2.16) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923933 9c3s:B (2.16) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923934 9c3s:B (2.16) BS04 dna N/A GO:0003676 ... B4EFK1 39244607
    923935 9c3s:B (2.16) BS05 FRU N/A GO:0003676 ... B4EFK1 39244607
    923936 9c3s:B (2.16) BS06 SFG N/A GO:0003676 ... B4EFK1 39244607
    923937 9c3s:C (2.16) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923938 9c3s:C (2.16) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923939 9c3s:C (2.16) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923940 9c3s:C (2.16) BS04 dna N/A GO:0003676 ... B4EFK1 39244607
    923941 9c3s:C (2.16) BS05 SFG N/A GO:0003676 ... B4EFK1 39244607
    923942 9c3s:D (2.16) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923943 9c3s:D (2.16) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923944 9c3s:D (2.16) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923945 9c3s:D (2.16) BS04 SFG N/A GO:0003676 ... B4EFK1 39244607
    923946 9c3t:A (2.37) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923947 9c3t:A (2.37) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923948 9c3t:A (2.37) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923949 9c3t:A (2.37) BS04 dna N/A GO:0003676 ... B4EFK1 39244607
    923950 9c3t:A (2.37) BS05 SFG N/A GO:0003676 ... B4EFK1 39244607
    923951 9c3t:B (2.37) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923952 9c3t:B (2.37) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923953 9c3t:B (2.37) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923954 9c3t:B (2.37) BS04 dna N/A GO:0003676 ... B4EFK1 39244607
    923955 9c3t:B (2.37) BS05 SFG N/A GO:0003676 ... B4EFK1 39244607
    923956 9c3t:C (2.37) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923957 9c3t:C (2.37) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923958 9c3t:C (2.37) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923959 9c3t:C (2.37) BS04 SFG N/A GO:0003676 ... B4EFK1 39244607
    923960 9c3t:D (2.37) BS01 dna N/A GO:0003676 ... B4EFK1 39244607
    923961 9c3t:D (2.37) BS02 dna N/A GO:0003676 ... B4EFK1 39244607
    923962 9c3t:D (2.37) BS03 dna N/A GO:0003676 ... B4EFK1 39244607
    923963 9c3t:D (2.37) BS04 SFG N/A GO:0003676 ... B4EFK1 39244607
    923964 9c3u:A (2.77) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923965 9c3u:A (2.77) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923966 9c3u:A (2.77) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923967 9c3u:A (2.77) BS04 FRU N/A GO:0003676 ... A0A8I1DKW0 39244607
    923968 9c3u:A (2.77) BS05 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    923969 9c3u:B (2.77) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923970 9c3u:B (2.77) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923971 9c3u:B (2.77) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923972 9c3u:B (2.77) BS04 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923973 9c3u:B (2.77) BS05 FRU N/A GO:0003676 ... A0A8I1DKW0 39244607
    923974 9c3u:B (2.77) BS06 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    923975 9c3u:C (2.77) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923976 9c3u:C (2.77) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923977 9c3u:C (2.77) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923978 9c3u:C (2.77) BS04 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923979 9c3u:C (2.77) BS05 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    923980 9c3u:D (2.77) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923981 9c3u:D (2.77) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923982 9c3u:D (2.77) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923983 9c3u:D (2.77) BS04 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    923984 9c3u:D (2.77) BS05 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    923985 9c48:A (2.4) BS01 ATP N/A N/A Q99571 39823330
    923986 9c48:A (2.4) BS02 ATP N/A N/A Q99571 39823330
    923987 9c48:B (2.4) BS01 ATP N/A N/A Q99571 39823330
    923988 9c48:B (2.4) BS02 ATP N/A N/A Q99571 39823330
    923989 9c48:C (2.4) BS01 ATP N/A N/A Q99571 39823330
    923990 9c48:C (2.4) BS02 ATP N/A N/A Q99571 39823330
    923991 9c4c:E (3.09) BS01 dna N/A GO:0003677 ... P54512 N/A
    923992 9c4c:E (3.09) BS02 MN N/A GO:0003677 ... P54512 N/A
    923993 9c4c:E (3.09) BS03 MN N/A GO:0003677 ... P54512 N/A
    923994 9c4c:F (3.09) BS01 dna N/A GO:0003677 ... P54512 N/A
    923995 9c4c:F (3.09) BS02 dna N/A GO:0003677 ... P54512 N/A
    923996 9c4c:F (3.09) BS03 MN N/A GO:0003677 ... P54512 N/A
    923997 9c4c:F (3.09) BS04 MN N/A GO:0003677 ... P54512 N/A
    923998 9c4c:G (3.09) BS01 dna N/A GO:0003677 ... P54512 N/A
    923999 9c4c:G (3.09) BS02 dna N/A GO:0003677 ... P54512 N/A
    924000 9c4c:G (3.09) BS03 MN N/A GO:0003677 ... P54512 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).