SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    924001 8ygl:J (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924002 8ygl:J (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924003 8ygl:J (2.6) BS04 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924004 8ygl:K (2.6) BS01 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924005 8ygl:K (2.6) BS02 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924006 8ygl:K (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924007 8ygl:K (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924008 8ygl:K (2.6) BS05 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924009 8ygl:L (2.6) BS01 BCL N/A GO:0009772 ... A0A2L1K3X9 39383221
    924010 8ygl:L (2.6) BS02 BCL N/A GO:0009772 ... A0A2L1K3X9 39383221
    924011 8ygl:L (2.6) BS03 BPH N/A GO:0009772 ... A0A2L1K3X9 39383221
    924012 8ygl:L (2.6) BS04 U10 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924013 8ygl:L (2.6) BS05 U10 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924014 8ygl:L (2.6) BS06 U10 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924015 8ygl:L (2.6) BS07 U10 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924016 8ygl:L (2.6) BS08 BPH N/A GO:0009772 ... A0A2L1K3X9 39383221
    924017 8ygl:L (2.6) BS09 U10 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924018 8ygl:L (2.6) BS10 BCL N/A GO:0009772 ... A0A2L1K3X9 39383221
    924019 8ygl:L (2.6) BS11 FE2 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924020 8ygl:L (2.6) BS12 U10 N/A GO:0009772 ... A0A2L1K3X9 39383221
    924021 8ygl:M (2.6) BS01 BCL N/A GO:0009772 ... A0A2T4J9V9 39383221
    924022 8ygl:M (2.6) BS02 BPH N/A GO:0009772 ... A0A2T4J9V9 39383221
    924023 8ygl:M (2.6) BS03 U10 N/A GO:0009772 ... A0A2T4J9V9 39383221
    924024 8ygl:M (2.6) BS04 BPH N/A GO:0009772 ... A0A2T4J9V9 39383221
    924025 8ygl:M (2.6) BS05 U10 N/A GO:0009772 ... A0A2T4J9V9 39383221
    924026 8ygl:M (2.6) BS06 BCL N/A GO:0009772 ... A0A2T4J9V9 39383221
    924027 8ygl:M (2.6) BS07 BCL N/A GO:0009772 ... A0A2T4J9V9 39383221
    924028 8ygl:M (2.6) BS08 FE2 N/A GO:0009772 ... A0A2T4J9V9 39383221
    924029 8ygl:M (2.6) BS09 U10 N/A GO:0009772 ... A0A2T4J9V9 39383221
    924030 8ygl:M (2.6) BS10 SPO N/A GO:0009772 ... A0A2T4J9V9 39383221
    924031 8ygl:N (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924032 8ygl:N (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924033 8ygl:N (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924034 8ygl:O (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924035 8ygl:O (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924036 8ygl:O (2.6) BS03 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924037 8ygl:O (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924038 8ygl:P (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924039 8ygl:P (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924040 8ygl:P (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924041 8ygl:P (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924042 8ygl:Q (2.6) BS01 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924043 8ygl:Q (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924044 8ygl:Q (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924045 8ygl:Q (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924046 8ygl:Q (2.6) BS05 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924047 8ygl:Q (2.6) BS06 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924048 8ygl:R (2.6) BS01 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924049 8ygl:R (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924050 8ygl:R (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924051 8ygl:R (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924052 8ygl:S (2.6) BS01 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924053 8ygl:S (2.6) BS02 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924054 8ygl:S (2.6) BS03 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924055 8ygl:S (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924056 8ygl:S (2.6) BS05 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924057 8ygl:T (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924058 8ygl:T (2.6) BS02 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924059 8ygl:T (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924060 8ygl:U (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924061 8ygl:U (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924062 8ygl:U (2.6) BS03 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924063 8ygl:U (2.6) BS04 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924064 8ygl:U (2.6) BS05 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924065 8ygl:V (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924066 8ygl:V (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924067 8ygl:V (2.6) BS03 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924068 8ygl:V (2.6) BS04 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924069 8ygl:W (2.6) BS01 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924070 8ygl:W (2.6) BS02 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924071 8ygl:W (2.6) BS03 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924072 8ygl:W (2.6) BS04 SPO N/A GO:0005886 ... A0A2T4JA00 39383221
    924073 8ygl:W (2.6) BS05 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924074 8ygl:X (2.6) BS01 SPO N/A N/A A0A2T4J9W4 39383221
    924075 8ygl:X (2.6) BS02 U10 N/A N/A A0A2T4J9W4 39383221
    924076 8ygl:Z (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924077 8ygl:Z (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924078 8ygl:Z (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924079 8ygl:a (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924080 8ygl:a (2.6) BS02 BCL N/A GO:0005886 ... A0A2T4JA00 39383221
    924081 8ygl:b (2.6) BS01 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924082 8ygl:b (2.6) BS02 SPO N/A GO:0005886 ... A0A2T4JAH7 39383221
    924083 8ygl:b (2.6) BS03 BCL N/A GO:0005886 ... A0A2T4JAH7 39383221
    924084 8ygq:B (2.71) BS01 EUI N/A N/A Q15562 N/A
    924085 8ygt:B (3.01) BS01 peptide N/A GO:0019028 ... A2T3T2 39833145
    924086 8ygt:H (3.01) BS01 peptide N/A N/A N/A 39833145
    924087 8ygu:B (3.13) BS01 peptide N/A GO:0019028 ... A2T3T2 39833145
    924088 8ygw:A (3.301) BS01 B96 2.7.11.24 GO:0000165 ... Q15759 N/A
    924089 8ygy:A (2.401) BS01 FUC 3.4.21.35 GO:0003073 ... P06870 N/A
    924090 8yh0:R (2.86) BS01 NEC N/A GO:0004930 ... A0A5P9VSM6
    P03435
    39511145
    924091 8yh1:A (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924092 8yh1:A (2.6) BS02 UDP N/A GO:0005737 ... P43891 40892736
    924093 8yh1:B (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924094 8yh1:B (2.6) BS02 UDP N/A GO:0005737 ... P43891 40892736
    924095 8yh1:C (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924096 8yh1:C (2.6) BS02 UDP N/A GO:0005737 ... P43891 40892736
    924097 8yh1:D (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924098 8yh1:D (2.6) BS02 UDP N/A GO:0005737 ... P43891 40892736
    924099 8yh1:E (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924100 8yh1:E (2.6) BS02 U5P N/A GO:0005737 ... P43891 40892736
    924101 8yh1:F (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924102 8yh1:F (2.6) BS02 U5P N/A GO:0005737 ... P43891 40892736
    924103 8yh1:G (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924104 8yh1:G (2.6) BS02 U5P N/A GO:0005737 ... P43891 40892736
    924105 8yh1:H (2.6) BS01 ADP N/A GO:0005737 ... P43891 40892736
    924106 8yh1:H (2.6) BS02 U5P N/A GO:0005737 ... P43891 40892736
    924107 8yh1:I (2.6) BS01 UDP N/A GO:0005737 ... P43891 40892736
    924108 8yh2:R (3.27) BS01 ADN N/A GO:0004930 ... A0A5P9VSM6
    P03435
    39511145
    924109 8yh3:R (3.4) BS01 6MD N/A GO:0004930 ... A0A5P9VSM6
    P03435
    39511145
    924110 8yh4:A (2.128) BS01 GCS N/A GO:0004553 ... A7MSF4 40835009
    924111 8yh4:A (2.128) BS02 GCS N/A GO:0004553 ... A7MSF4 40835009
    924112 8yh4:A (2.128) BS03 ZN N/A GO:0004553 ... A7MSF4 40835009
    924113 8yh4:B (2.128) BS01 GCS N/A GO:0004553 ... A7MSF4 40835009
    924114 8yh4:B (2.128) BS02 GCS N/A GO:0004553 ... A7MSF4 40835009
    924115 8yh4:B (2.128) BS03 ZN N/A GO:0004553 ... A7MSF4 40835009
    924116 8yh4:C (2.128) BS01 GCS N/A GO:0004553 ... A7MSF4 40835009
    924117 8yh4:C (2.128) BS02 GCS N/A GO:0004553 ... A7MSF4 40835009
    924118 8yh4:C (2.128) BS03 ZN N/A GO:0004553 ... A7MSF4 40835009
    924119 8yh4:D (2.128) BS01 GCS N/A GO:0004553 ... A7MSF4 40835009
    924120 8yh4:D (2.128) BS02 GCS N/A GO:0004553 ... A7MSF4 40835009
    924121 8yh4:D (2.128) BS03 ZN N/A GO:0004553 ... A7MSF4 40835009
    924122 8yh5:R (3.66) BS01 ZIR N/A GO:0004930 ... A0A5P9VSM6
    P03435
    39511145
    924123 8yh6:R (3.62) BS01 XS0 N/A GO:0004930 ... A0A5P9VSM6
    P03435
    39511145
    924124 8yh8:C (2.7) BS01 ADP N/A GO:0005524 ... P09219 39788275
    924125 8yh8:D (2.7) BS01 ADP N/A GO:0005515 ... P07677 39788275
    924126 8yh8:E (2.7) BS01 ADP N/A GO:0005515 ... P07677 39788275
    924127 8yh8:F (2.7) BS01 ATP N/A GO:0005515 ... P07677 39788275
    924128 8yh9:A (3.35) BS01 rna N/A N/A A0AAX7FM22 39047725
    924129 8yh9:B (3.35) BS01 rna N/A GO:0004519 ... A0AAX7FM27 39047725
    924130 8yh9:D (3.35) BS01 rna N/A N/A A0AAX7FM28 39047725
    924131 8yh9:E (3.35) BS01 rna N/A N/A A0AAX7FM28 39047725
    924132 8yh9:F (3.35) BS01 rna N/A N/A A0AAX7FM28 39047725
    924133 8yh9:G (3.35) BS01 rna N/A N/A A0AAX7FM28 39047725
    924134 8yh9:H (3.35) BS01 rna N/A N/A A0AAX7FM28 39047725
    924135 8yh9:I (3.35) BS01 rna N/A N/A A0AAX7FM28 39047725
    924136 8yh9:J (3.35) BS01 rna N/A GO:0003676 ... A0AAX7FM29 39047725
    924137 8yha:A (3.4) BS01 rna N/A GO:0003676 ... A0ACD6BA35 39047725
    924138 8yha:A (3.4) BS02 dna N/A GO:0003676 ... A0ACD6BA35 39047725
    924139 8yha:A (3.4) BS03 ZN N/A GO:0003676 ... A0ACD6BA35 39047725
    924140 8yha:B (3.4) BS01 rna N/A N/A A0ACD6BA36 39047725
    924141 8yha:B (3.4) BS02 dna N/A N/A A0ACD6BA36 39047725
    924142 8yha:D (3.4) BS01 rna N/A N/A A0ACD6BA34 39047725
    924143 8yha:D (3.4) BS02 dna N/A N/A A0ACD6BA34 39047725
    924144 8yha:E (3.4) BS01 rna N/A N/A A0ACD6BA34 39047725
    924145 8yha:E (3.4) BS02 dna N/A N/A A0ACD6BA34 39047725
    924146 8yha:F (3.4) BS01 rna N/A N/A A0ACD6BA34 39047725
    924147 8yha:F (3.4) BS02 dna N/A N/A A0ACD6BA34 39047725
    924148 8yha:G (3.4) BS01 rna N/A N/A A0ACD6BA34 39047725
    924149 8yha:G (3.4) BS02 dna N/A N/A A0ACD6BA34 39047725
    924150 8yha:H (3.4) BS01 rna N/A N/A A0ACD6BA34 39047725
    924151 8yha:H (3.4) BS02 dna N/A N/A A0ACD6BA34 39047725
    924152 8yha:I (3.4) BS01 rna N/A N/A A0ACD6BA34 39047725
    924153 8yha:I (3.4) BS02 dna N/A N/A A0ACD6BA34 39047725
    924154 8yha:J (3.4) BS01 rna N/A N/A A0ACD6BA32 39047725
    924155 8yha:J (3.4) BS02 dna N/A N/A A0ACD6BA32 39047725
    924156 8yha:J (3.4) BS03 ZN N/A N/A A0ACD6BA32 39047725
    924157 8yha:K (3.4) BS01 dna N/A N/A A0ACD6BA33 39047725
    924158 8yhd:A (2.93) BS01 rna N/A N/A N/A 39143216
    924159 8yhd:A (2.93) BS02 ZN N/A N/A N/A 39143216
    924160 8yhd:B (2.93) BS01 rna N/A N/A N/A 39143216
    924161 8yhd:C (2.93) BS01 rna N/A N/A N/A 39143216
    924162 8yhd:C (2.93) BS02 rna N/A N/A N/A 39143216
    924163 8yhd:C (2.93) BS03 ZN N/A N/A N/A 39143216
    924164 8yhd:D (2.93) BS01 rna N/A N/A N/A 39143216
    924165 8yhd:D (2.93) BS02 rna N/A N/A N/A 39143216
    924166 8yhd:D (2.93) BS03 ZN N/A N/A N/A 39143216
    924167 8yhd:E (2.93) BS01 rna N/A N/A N/A 39143216
    924168 8yhd:E (2.93) BS02 rna N/A N/A N/A 39143216
    924169 8yhd:E (2.93) BS03 ZN N/A N/A N/A 39143216
    924170 8yhd:F (2.93) BS01 rna N/A N/A N/A 39143216
    924171 8yhd:F (2.93) BS02 rna N/A N/A N/A 39143216
    924172 8yhd:F (2.93) BS03 ZN N/A N/A N/A 39143216
    924173 8yhd:G (2.93) BS01 rna N/A N/A N/A 39143216
    924174 8yhd:G (2.93) BS02 ZN N/A N/A N/A 39143216
    924175 8yhd:H (2.93) BS01 rna N/A N/A N/A 39143216
    924176 8yhd:H (2.93) BS02 ZN N/A N/A N/A 39143216
    924177 8yhd:H (2.93) BS03 ZN N/A N/A N/A 39143216
    924178 8yhd:I (2.93) BS01 rna N/A N/A N/A 39143216
    924179 8yhd:J (2.93) BS01 rna N/A N/A N/A 39143216
    924180 8yhd:J (2.93) BS02 rna N/A N/A N/A 39143216
    924181 8yhd:J (2.93) BS03 ZN N/A N/A N/A 39143216
    924182 8yhd:K (2.93) BS01 rna N/A N/A N/A 39143216
    924183 8yhd:L (2.93) BS01 rna N/A N/A N/A 39143216
    924184 8yhd:O (2.93) BS01 rna N/A N/A N/A 39143216
    924185 8yhd:O (2.93) BS02 rna N/A N/A N/A 39143216
    924186 8yhd:O (2.93) BS03 ZN N/A N/A N/A 39143216
    924187 8yhe:A (3.07) BS01 rna N/A N/A N/A 39143216
    924188 8yhe:A (3.07) BS02 ZN N/A N/A N/A 39143216
    924189 8yhe:B (3.07) BS01 rna N/A N/A N/A 39143216
    924190 8yhe:B (3.07) BS02 rna N/A N/A N/A 39143216
    924191 8yhe:B (3.07) BS03 ZN N/A N/A N/A 39143216
    924192 8yhe:C (3.07) BS01 rna N/A N/A N/A 39143216
    924193 8yhe:C (3.07) BS02 rna N/A N/A N/A 39143216
    924194 8yhe:C (3.07) BS03 ZN N/A N/A N/A 39143216
    924195 8yhe:D (3.07) BS01 rna N/A N/A N/A 39143216
    924196 8yhe:D (3.07) BS02 rna N/A N/A N/A 39143216
    924197 8yhe:D (3.07) BS03 ZN N/A N/A N/A 39143216
    924198 8yhe:E (3.07) BS01 rna N/A N/A N/A 39143216
    924199 8yhe:E (3.07) BS02 rna N/A N/A N/A 39143216
    924200 8yhe:E (3.07) BS03 ZN N/A N/A N/A 39143216

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).