SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    924001 9c4c:G (3.09) BS04 MN N/A GO:0003677 ... P54512 N/A
    924002 9c4c:H (3.09) BS01 dna N/A GO:0003677 ... P54512 N/A
    924003 9c4c:H (3.09) BS02 MN N/A GO:0003677 ... P54512 N/A
    924004 9c4c:H (3.09) BS03 MN N/A GO:0003677 ... P54512 N/A
    924005 9c4d:C (4.17) BS01 MN N/A GO:0003677 ... P54512 N/A
    924006 9c4d:C (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924007 9c4d:D (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924008 9c4d:D (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924009 9c4d:D (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924010 9c4d:E (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924011 9c4d:E (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924012 9c4d:E (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924013 9c4d:F (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924014 9c4d:F (4.17) BS02 dna N/A GO:0003677 ... P54512 N/A
    924015 9c4d:F (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924016 9c4d:F (4.17) BS04 MN N/A GO:0003677 ... P54512 N/A
    924017 9c4d:G (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924018 9c4d:G (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924019 9c4d:G (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924020 9c4d:H (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924021 9c4d:H (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924022 9c4d:H (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924023 9c4d:I (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924024 9c4d:I (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924025 9c4d:I (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924026 9c4d:J (4.17) BS01 dna N/A GO:0003677 ... P54512 N/A
    924027 9c4d:J (4.17) BS02 MN N/A GO:0003677 ... P54512 N/A
    924028 9c4d:J (4.17) BS03 MN N/A GO:0003677 ... P54512 N/A
    924029 9c4g:0 (2.53) BS01 rna N/A GO:0003735 ... A0A2C6LJM0 39122144
    924030 9c4g:0 (2.53) BS02 ZN N/A GO:0003735 ... A0A2C6LJM0 39122144
    924031 9c4g:1 (2.53) BS01 rna N/A GO:0003735 ... A0A2B7IDI8 39122144
    924032 9c4g:2 (2.53) BS01 rna N/A GO:0003735 ... A0AAD0QKX2 39122144
    924033 9c4g:3 (2.53) BS01 rna N/A GO:0003735 ... A0A2B7JN22 39122144
    924034 9c4g:4 (2.53) BS01 ZN N/A GO:0003735 ... A0A2B7JUW7 39122144
    924035 9c4g:c (2.53) BS01 rna N/A GO:0002181 ... A0A2B7JMV5 39122144
    924036 9c4g:d (2.53) BS01 rna N/A GO:0003735 ... A0A1G9KW65 39122144
    924037 9c4g:e (2.53) BS01 rna N/A GO:0003735 ... A0A2B7I5M5 39122144
    924038 9c4g:f (2.53) BS01 rna N/A GO:0000049 ... A0A3E2DDM1 39122144
    924039 9c4g:f (2.53) BS02 rna N/A GO:0000049 ... A0A3E2DDM1 39122144
    924040 9c4g:g (2.53) BS01 rna N/A GO:0002181 ... A0A2B7I5S3 39122144
    924041 9c4g:i (2.53) BS01 rna N/A GO:0003729 ... A0A2B7I6I7 39122144
    924042 9c4g:j (2.53) BS01 rna N/A GO:0003735 ... A0A2B7JMZ8 39122144
    924043 9c4g:k (2.53) BS01 rna N/A GO:0003735 ... A0A2B7IUA0 39122144
    924044 9c4g:l (2.53) BS01 rna N/A GO:0000049 ... A0A2B7I5M8 39122144
    924045 9c4g:l (2.53) BS02 rna N/A GO:0000049 ... A0A2B7I5M8 39122144
    924046 9c4g:m (2.53) BS01 rna N/A GO:0003735 ... A0A8B2VJI7 39122144
    924047 9c4g:n (2.53) BS01 rna N/A GO:0003735 ... A0A2B7JN02 39122144
    924048 9c4g:n (2.53) BS02 rna N/A GO:0003735 ... A0A2B7JN02 39122144
    924049 9c4g:o (2.53) BS01 rna N/A GO:0003735 ... A0A2C6LKT3 39122144
    924050 9c4g:p (2.53) BS01 rna N/A GO:0000027 ... A0A2B7I6V3 39122144
    924051 9c4g:q (2.53) BS01 rna N/A GO:0003723 ... A0A2B7IGX1 39122144
    924052 9c4g:r (2.53) BS01 rna N/A GO:0003735 ... A0A2B7ITY5 39122144
    924053 9c4g:s (2.53) BS01 rna N/A GO:0003735 ... A0A2C6LEQ5 39122144
    924054 9c4g:t (2.53) BS01 rna N/A GO:0003723 ... A0AA44U3B8 39122144
    924055 9c4g:u (2.53) BS01 rna N/A GO:0003723 ... A0A2B7IYF8 39122144
    924056 9c4g:u (2.53) BS02 rna N/A GO:0003723 ... A0A2B7IYF8 39122144
    924057 9c4g:v (2.53) BS01 rna N/A GO:0003735 ... A0A2B7IGT1 39122144
    924058 9c4g:v (2.53) BS02 rna N/A GO:0003735 ... A0A2B7IGT1 39122144
    924059 9c4g:w (2.53) BS01 rna N/A GO:0003735 ... A0A2B7I7B7 39122144
    924060 9c4g:w (2.53) BS02 ZN N/A GO:0003735 ... A0A2B7I7B7 39122144
    924061 9c4g:x (2.53) BS01 rna N/A GO:0003735 ... A0A2B7JB12 39122144
    924062 9c4g:y (2.53) BS01 rna N/A GO:0003735 ... A0A2B7I5Y4 39122144
    924063 9c4g:y (2.53) BS02 rna N/A GO:0003735 ... A0A2B7I5Y4 39122144
    924064 9c4g:z (2.53) BS01 rna N/A GO:0003735 ... A0A2B7I771 39122144
    924065 9c4g:z (2.53) BS02 ZN N/A GO:0003735 ... A0A2B7I771 39122144
    924066 9c4i:A (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    924067 9c4i:A (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    924068 9c4i:A (1.3) BS03 MN N/A GO:0005537 ... C0HK20 N/A
    924069 9c4i:A (1.3) BS04 CA N/A GO:0005537 ... C0HK20 N/A
    924070 9c4i:B (1.3) BS01 MMA N/A GO:0005537 ... C0HK20 N/A
    924071 9c4i:B (1.3) BS02 MAN N/A GO:0005537 ... C0HK20 N/A
    924072 9c4i:B (1.3) BS03 CA N/A GO:0005537 ... C0HK20 N/A
    924073 9c4i:B (1.3) BS04 MN N/A GO:0005537 ... C0HK20 N/A
    924074 9c4m:A (2.48) BS01 IMP N/A GO:0003824 ... P31002 39235234
    924075 9c4m:A (2.48) BS02 A1AUF N/A GO:0003824 ... P31002 39235234
    924076 9c4m:A (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924077 9c4m:B (2.48) BS01 A1AUF N/A GO:0003824 ... P31002 39235234
    924078 9c4m:B (2.48) BS02 IMP N/A GO:0003824 ... P31002 39235234
    924079 9c4m:B (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924080 9c4m:C (2.48) BS01 A1AUF N/A GO:0003824 ... P31002 39235234
    924081 9c4m:C (2.48) BS02 IMP N/A GO:0003824 ... P31002 39235234
    924082 9c4m:C (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924083 9c4m:D (2.48) BS01 A1AUF N/A GO:0003824 ... P31002 39235234
    924084 9c4m:D (2.48) BS02 IMP N/A GO:0003824 ... P31002 39235234
    924085 9c4m:D (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924086 9c4m:E (2.48) BS01 IMP N/A GO:0003824 ... P31002 39235234
    924087 9c4m:E (2.48) BS02 A1AUF N/A GO:0003824 ... P31002 39235234
    924088 9c4m:E (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924089 9c4m:F (2.48) BS01 A1AUF N/A GO:0003824 ... P31002 39235234
    924090 9c4m:F (2.48) BS02 IMP N/A GO:0003824 ... P31002 39235234
    924091 9c4m:F (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924092 9c4m:G (2.48) BS01 A1AUF N/A GO:0003824 ... P31002 39235234
    924093 9c4m:G (2.48) BS02 IMP N/A GO:0003824 ... P31002 39235234
    924094 9c4m:G (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924095 9c4m:H (2.48) BS01 A1AUF N/A GO:0003824 ... P31002 39235234
    924096 9c4m:H (2.48) BS02 IMP N/A GO:0003824 ... P31002 39235234
    924097 9c4m:H (2.48) BS03 A1AUF N/A GO:0003824 ... P31002 39235234
    924098 9c4o:A (1.99) BS01 CA N/A GO:0009279 ... P76115 N/A
    924099 9c4o:A (1.99) BS02 PQQ N/A GO:0009279 ... P76115 N/A
    924100 9c4p:A (2.4) BS01 MG N/A N/A P17597 39373624
    924101 9c4p:A (2.4) BS02 FAD N/A N/A P17597 39373624
    924102 9c4p:A (2.4) BS03 A1AUE N/A N/A P17597 39373624
    924103 9c4p:A (2.4) BS04 AUJ N/A N/A P17597 39373624
    924104 9c4q:A (2.52) BS01 MG N/A N/A P17597 39373624
    924105 9c4q:A (2.52) BS02 FAD N/A N/A P17597 39373624
    924106 9c4q:A (2.52) BS03 AUJ N/A N/A P17597 39373624
    924107 9c4q:A (2.52) BS04 OXY N/A N/A P17597 39373624
    924108 9c4q:A (2.52) BS05 A1AUH N/A N/A P17597 39373624
    924109 9c4q:A (2.52) BS06 MG N/A N/A P17597 39373624
    924110 9c4r:A (2.84) BS01 MG N/A N/A P17597 39373624
    924111 9c4r:A (2.84) BS02 FAD N/A N/A P17597 39373624
    924112 9c4r:A (2.84) BS03 AUJ N/A N/A P17597 39373624
    924113 9c4r:A (2.84) BS04 A1AUL N/A N/A P17597 39373624
    924114 9c50:B (2.5) BS01 peptide N/A N/A P00734 39756655
    924115 9c50:B (2.5) BS02 peptide N/A N/A P00734 39756655
    924116 9c50:D (2.5) BS01 peptide N/A N/A P00734 39756655
    924117 9c50:D (2.5) BS02 peptide N/A N/A P00734 39756655
    924118 9c55:A (2.36) BS01 527 N/A GO:0004725 ... P17706 39177701
    924119 9c56:A (2.43) BS01 FRJ N/A GO:0004725 ... P17706 39177701
    924120 9c57:A (2.75) BS01 AGS N/A GO:0000492 ... Q9Y265 39088653
    924121 9c57:B (2.75) BS01 AGS N/A GO:0000492 ... Q9Y230 39088653
    924122 9c57:C (2.75) BS01 AGS N/A GO:0000492 ... Q9Y265 39088653
    924123 9c57:D (2.75) BS01 AGS N/A GO:0000492 ... Q9Y230 39088653
    924124 9c57:E (2.75) BS01 AGS N/A GO:0000492 ... Q9Y265 39088653
    924125 9c57:F (2.75) BS01 AGS N/A GO:0000492 ... Q9Y230 39088653
    924126 9c57:G (2.75) BS01 AGS N/A GO:0000786 ... Q96L91 39088653
    924127 9c57:L (2.75) BS01 ATP N/A GO:0000723 ... O96019 39088653
    924128 9c58:A (4.7) BS01 MG N/A GO:0000139 ... P84077 N/A
    924129 9c58:A (4.7) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924130 9c59:A (4.3) BS01 MG N/A GO:0000139 ... P84077 N/A
    924131 9c59:A (4.3) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924132 9c59:C (4.3) BS01 MG N/A GO:0000139 ... P84077 N/A
    924133 9c59:C (4.3) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924134 9c59:M (4.3) BS01 peptide N/A GO:0005515 ... Q9Y2T2 N/A
    924135 9c59:a (4.3) BS01 MG N/A GO:0000139 ... P84077 N/A
    924136 9c59:a (4.3) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924137 9c59:c (4.3) BS01 MG N/A GO:0000139 ... P84077 N/A
    924138 9c59:c (4.3) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924139 9c59:m (4.3) BS01 peptide N/A GO:0005515 ... Q9Y2T2 N/A
    924140 9c5a:C (4.2) BS01 MG N/A GO:0000139 ... P84077 N/A
    924141 9c5a:C (4.2) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924142 9c5a:M (4.2) BS01 peptide N/A GO:0005515 ... Q9Y2T2 N/A
    924143 9c5a:c (4.2) BS01 MG N/A GO:0000139 ... P84077 N/A
    924144 9c5a:c (4.2) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924145 9c5a:m (4.2) BS01 peptide N/A GO:0005515 ... Q9Y2T2 N/A
    924146 9c5b:A (4.5) BS01 MG N/A GO:0000139 ... P84077 N/A
    924147 9c5b:A (4.5) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924148 9c5b:C (4.5) BS01 MG N/A GO:0000139 ... P84077 N/A
    924149 9c5b:C (4.5) BS02 GTP N/A GO:0000139 ... P84077 N/A
    924150 9c5b:M (4.5) BS01 peptide N/A GO:0005515 ... Q9Y2T2 N/A
    924151 9c5e:A (-1.00) BS01 ZN N/A GO:0004842 ... Q7KTX7 39078678
    924152 9c5e:A (-1.00) BS02 ZN N/A GO:0004842 ... Q7KTX7 39078678
    924153 9c5e:A (-1.00) BS03 4LJ N/A GO:0004842 ... Q7KTX7 39078678
    924154 9c5g:A (2.77) BS01 dna N/A N/A A0AAN1X6R7 39588753
    924155 9c5g:A (2.77) BS02 dna N/A N/A A0AAN1X6R7 39588753
    924156 9c5g:B (2.77) BS01 dna N/A N/A A0AAN1X6R7 39588753
    924157 9c5g:B (2.77) BS02 dna N/A N/A A0AAN1X6R7 39588753
    924158 9c5p:A (1.15) BS01 ZN N/A GO:0016787 ... A0A0F7KYQ8 39396683
    924159 9c5p:A (1.15) BS02 ZN N/A GO:0016787 ... A0A0F7KYQ8 39396683
    924160 9c5p:A (1.15) BS03 A1AUQ N/A GO:0016787 ... A0A0F7KYQ8 39396683
    924161 9c5q:A (3.1) BS01 dna N/A GO:0003676 ... O75417 38895274
    924162 9c5q:C (3.1) BS01 dna N/A GO:0003676 ... O75417 38895274
    924163 9c61:A (2.6) BS01 A1AUU N/A N/A Q17RV3 N/A
    924164 9c61:B (2.6) BS01 A1AUU N/A N/A Q17RV3 N/A
    924165 9c62:A (5.28) BS01 ADP N/A GO:0000492 ... Q9Y265 39088653
    924166 9c62:B (5.28) BS01 ADP N/A GO:0000492 ... Q9Y230 39088653
    924167 9c62:C (5.28) BS01 ADP N/A GO:0000492 ... Q9Y265 39088653
    924168 9c62:D (5.28) BS01 ADP N/A GO:0000492 ... Q9Y230 39088653
    924169 9c62:E (5.28) BS01 ADP N/A GO:0000492 ... Q9Y265 39088653
    924170 9c62:F (5.28) BS01 ADP N/A GO:0000492 ... Q9Y230 39088653
    924171 9c66:A (1.4) BS01 peptide N/A N/A Q8N8S7 39138154
    924172 9c67:A (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924173 9c67:B (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924174 9c67:C (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924175 9c67:D (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924176 9c67:E (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924177 9c67:F (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924178 9c68:A (1.82) BS01 rna N/A N/A A0A3C0QUR5 39471810
    924179 9c68:B (1.82) BS01 rna N/A N/A A0A3C0QUR5 39471810
    924180 9c69:A (2.4) BS01 rna N/A N/A A0A3C0QUR5 39471810
    924181 9c69:B (2.4) BS01 rna N/A N/A A0A3C0QUR5 39471810
    924182 9c6c:A (3.4) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924183 9c6c:B (3.4) BS01 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924184 9c6c:B (3.4) BS02 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924185 9c6c:C (3.4) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924186 9c6c:D (3.4) BS01 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924187 9c6c:D (3.4) BS02 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924188 9c6c:E (3.4) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924189 9c6c:F (3.4) BS01 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924190 9c6c:F (3.4) BS02 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924191 9c6e:A (1.4) BS01 GOA N/A GO:0001664 ... P08168 39704710
    924192 9c6f:A (3.6) BS01 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924193 9c6f:A (3.6) BS02 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924194 9c6f:B (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924195 9c6f:C (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924196 9c6f:D (3.6) BS01 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924197 9c6f:D (3.6) BS02 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924198 9c6f:E (3.6) BS01 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924199 9c6f:E (3.6) BS02 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924200 9c6f:F (3.6) BS01 MG N/A GO:0004000 ... A0A3C0QUR5 39471810

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).