SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    924201 8yhe:F (3.07) BS01 rna N/A N/A N/A 39143216
    924202 8yhe:F (3.07) BS02 rna N/A N/A N/A 39143216
    924203 8yhe:F (3.07) BS03 ZN N/A N/A N/A 39143216
    924204 8yhe:G (3.07) BS01 rna N/A N/A N/A 39143216
    924205 8yhe:G (3.07) BS02 rna N/A N/A N/A 39143216
    924206 8yhe:H (3.07) BS01 rna N/A N/A N/A 39143216
    924207 8yhe:H (3.07) BS02 ZN N/A N/A N/A 39143216
    924208 8yhe:I (3.07) BS01 rna N/A N/A N/A 39143216
    924209 8yhe:J (3.07) BS01 rna N/A N/A N/A 39143216
    924210 8yhe:J (3.07) BS02 rna N/A N/A N/A 39143216
    924211 8yhe:J (3.07) BS03 ZN N/A N/A N/A 39143216
    924212 8yhe:K (3.07) BS01 rna N/A N/A N/A 39143216
    924213 8yhe:L (3.07) BS01 rna N/A N/A N/A 39143216
    924214 8yhf:A (1.4) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    924215 8yhg:A (1.76) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924216 8yhg:B (1.76) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924217 8yhh:A (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    924218 8yhh:B (1.95) BS01 ADP ? GO:0003777 ... P52732 N/A
    924219 8yhl:A (1.47) BS01 A1D6I 2.7.11.30 GO:0004672 ... P36897 N/A
    924220 8yhm:A (1.72) BS01 A1LZG N/A N/A A0A1B4XBH4 40881614
    924221 8yhm:B (1.72) BS01 A1LZG N/A N/A A0A1B4XBH4 40881614
    924222 8yhn:A (1.986) BS01 HEM N/A GO:0004497 ... Q82ES4 38835149
    924223 8yhq:C (2.42) BS01 HEM N/A GO:0005739 ... P00163 39601138
    924224 8yhq:C (2.42) BS02 HEM N/A GO:0005739 ... P00163 39601138
    924225 8yhq:C (2.42) BS03 CN5 N/A GO:0005739 ... P00163 39601138
    924226 8yhq:C (2.42) BS04 UQ6 N/A GO:0005739 ... P00163 39601138
    924227 8yhq:C (2.42) BS05 A1D6K N/A GO:0005739 ... P00163 39601138
    924228 8yhq:D (2.42) BS01 HEM N/A GO:0009055 ... P07143 39601138
    924229 8yhq:L (2.42) BS01 UQ6 N/A GO:0005739 ... P00163 39601138
    924230 8yhq:L (2.42) BS02 HEM N/A GO:0005739 ... P00163 39601138
    924231 8yhq:L (2.42) BS03 HEM N/A GO:0005739 ... P00163 39601138
    924232 8yhq:L (2.42) BS04 A1D6K N/A GO:0005739 ... P00163 39601138
    924233 8yhq:M (2.42) BS01 HEM N/A GO:0009055 ... P07143 39601138
    924234 8yhr:A (1.7) BS01 ORO 1.3.5.2 GO:0004152 ... Q02127 38724483
    924235 8yhr:A (1.7) BS02 FMN 1.3.5.2 GO:0004152 ... Q02127 38724483
    924236 8yhr:A (1.7) BS03 A1LYU 1.3.5.2 GO:0004152 ... Q02127 38724483
    924237 8yhs:A (1.5) BS01 A1D6J ? N/A Q58F21 N/A
    924238 8yhw:A (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    924239 8yhw:A (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    924240 8yhw:B (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    924241 8yhw:B (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    924242 8yhw:C (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    924243 8yhw:C (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    924244 8yhw:D (2.9) BS01 AGS 2.7.11.25 GO:0004672 ... Q99558 N/A
    924245 8yhw:D (2.9) BS02 MG 2.7.11.25 GO:0004672 ... Q99558 N/A
    924246 8yhx:H (2.81) BS01 APR N/A N/A C1PH93 39465277
    924247 8yhx:J (2.81) BS01 APR N/A N/A C1PH93 39465277
    924248 8yhx:L (2.81) BS01 APR N/A N/A C1PH93 39465277
    924249 8yhx:N (2.81) BS01 APR N/A N/A C1PH93 39465277
    924250 8yhx:P (2.81) BS01 APR N/A N/A C1PH93 39465277
    924251 8yhx:R (2.81) BS01 APR N/A N/A C1PH93 39465277
    924252 8yhz:H (1.62) BS01 peptide N/A N/A N/A 39461335
    924253 8yhz:L (1.62) BS01 peptide N/A N/A N/A 39461335
    924254 8yi6:A (3.6) BS01 ADE N/A GO:0005524 ... G8XHD8 41047544
    924255 8yi6:B (3.6) BS01 ADE N/A GO:0005524 ... G8XHD8 41047544
    924256 8yi8:A (1.33) BS01 A1LZH N/A N/A A0A1B4XBH4 40881614
    924257 8yi8:B (1.33) BS01 A1LZH N/A N/A A0A1B4XBH4 40881614
    924258 8yi8:C (1.33) BS01 A1LZH N/A N/A A0A1B4XBH4 40881614
    924259 8yi8:C (1.33) BS02 A1LZK N/A N/A A0A1B4XBH4 40881614
    924260 8yi8:D (1.33) BS01 A1LZH N/A N/A A0A1B4XBH4 40881614
    924261 8yi9:A (3.4) BS01 RP5 N/A GO:0000287 ... P11908 N/A
    924262 8yi9:A (3.4) BS02 ADP N/A GO:0000287 ... P11908 N/A
    924263 8yi9:A (3.4) BS03 ADP N/A GO:0000287 ... P11908 N/A
    924264 8yi9:B (3.4) BS01 RP5 N/A GO:0000287 ... P11908 N/A
    924265 8yi9:B (3.4) BS02 ADP N/A GO:0000287 ... P11908 N/A
    924266 8yi9:B (3.4) BS03 ADP N/A GO:0000287 ... P11908 N/A
    924267 8yi9:C (3.4) BS01 RP5 N/A GO:0000287 ... P11908 N/A
    924268 8yi9:C (3.4) BS02 ADP N/A GO:0000287 ... P11908 N/A
    924269 8yi9:C (3.4) BS03 ADP N/A GO:0000287 ... P11908 N/A
    924270 8yi9:D (3.4) BS01 ADP N/A GO:0000287 ... P11908 N/A
    924271 8yi9:D (3.4) BS02 ADP N/A GO:0000287 ... P11908 N/A
    924272 8yi9:D (3.4) BS03 RP5 N/A GO:0000287 ... P11908 N/A
    924273 8yi9:E (3.4) BS01 ADP N/A GO:0000287 ... P11908 N/A
    924274 8yi9:E (3.4) BS02 ADP N/A GO:0000287 ... P11908 N/A
    924275 8yi9:E (3.4) BS03 RP5 N/A GO:0000287 ... P11908 N/A
    924276 8yi9:F (3.4) BS01 ADP N/A GO:0000287 ... P11908 N/A
    924277 8yi9:F (3.4) BS02 ADP N/A GO:0000287 ... P11908 N/A
    924278 8yi9:F (3.4) BS03 RP5 N/A GO:0000287 ... P11908 N/A
    924279 8yib:A (2.27) BS01 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    924280 8yib:A (2.27) BS02 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    924281 8yib:A (2.27) BS03 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    924282 8yib:B (2.27) BS01 OCA 3.1.1.3 N/A A0A0U1MWF9 38757397
    924283 8yib:B (2.27) BS02 4I1 3.1.1.3 N/A A0A0U1MWF9 38757397
    924284 8yib:B (2.27) BS03 ZN 3.1.1.3 N/A A0A0U1MWF9 38757397
    924285 8yib:B (2.27) BS04 CA 3.1.1.3 N/A A0A0U1MWF9 38757397
    924286 8yic:R (3.47) BS01 A1LYQ N/A GO:0003796 ... P00720
    P21453
    N/A
    924287 8yie:A (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    924288 8yie:B (1.7) BS01 AC1 N/A GO:0004556 ... D2YYD7 N/A
    924289 8yif:A (1.6) BS01 A1L2I N/A GO:0004556 ... D2YYD7 N/A
    924290 8yig:A (3.15) BS01 rna N/A GO:0002230 ... A1ZAW0 39988314
    924291 8yig:B (3.15) BS01 rna N/A N/A Q9VJY9 39988314
    924292 8yig:E (3.15) BS01 rna N/A GO:0002230 ... A1ZAW0 39988314
    924293 8yig:F (3.15) BS01 rna N/A N/A Q9VJY9 39988314
    924294 8yih:A (4.08) BS01 peptide N/A GO:0002230 ... A1ZAW0 39988314
    924295 8yih:A (4.08) BS02 rna N/A GO:0002230 ... A1ZAW0 39988314
    924296 8yih:A (4.08) BS03 ADP N/A GO:0002230 ... A1ZAW0 39988314
    924297 8yih:A (4.08) BS04 MG N/A GO:0002230 ... A1ZAW0 39988314
    924298 8yii:A (3.42) BS01 peptide N/A GO:0002230 ... A1ZAW0 39988314
    924299 8yii:A (3.42) BS02 rna N/A GO:0002230 ... A1ZAW0 39988314
    924300 8yii:A (3.42) BS03 ADP N/A GO:0002230 ... A1ZAW0 39988314
    924301 8yii:A (3.42) BS04 MG N/A GO:0002230 ... A1ZAW0 39988314
    924302 8yii:A (3.42) BS05 MG N/A GO:0002230 ... A1ZAW0 39988314
    924303 8yii:A (3.42) BS06 MG N/A GO:0002230 ... A1ZAW0 39988314
    924304 8yii:A (3.42) BS07 MG N/A GO:0002230 ... A1ZAW0 39988314
    924305 8yik:A (1.3) BS01 ATP N/A N/A P0C9C2 39166497
    924306 8yil:C (2.58) BS01 HEM N/A GO:0005739 ... P00163 N/A
    924307 8yil:C (2.58) BS02 CN5 N/A GO:0005739 ... P00163 N/A
    924308 8yil:C (2.58) BS03 86T N/A GO:0005739 ... P00163 N/A
    924309 8yil:C (2.58) BS04 HEM N/A GO:0005739 ... P00163 N/A
    924310 8yil:D (2.58) BS01 HEM N/A GO:0009055 ... P07143 N/A
    924311 8yil:N (2.58) BS01 CN5 N/A GO:0005739 ... P00163 N/A
    924312 8yil:N (2.58) BS02 86T N/A GO:0005739 ... P00163 N/A
    924313 8yil:N (2.58) BS03 HEM N/A GO:0005739 ... P00163 N/A
    924314 8yil:N (2.58) BS04 HEM N/A GO:0005739 ... P00163 N/A
    924315 8yil:N (2.58) BS05 UQ6 N/A GO:0005739 ... P00163 N/A
    924316 8yil:O (2.58) BS01 HEM N/A GO:0009055 ... P07143 N/A
    924317 8yim:A (1.35) BS01 GNP N/A GO:0003924 ... Q9ULC3 39615683
    924318 8yim:A (1.35) BS02 MG N/A GO:0003924 ... Q9ULC3 39615683
    924319 8yin:C (2.74) BS01 HEM N/A GO:0005739 ... P00163 39601138
    924320 8yin:C (2.74) BS02 HEM N/A GO:0005739 ... P00163 39601138
    924321 8yin:C (2.74) BS03 CN5 N/A GO:0005739 ... P00163 39601138
    924322 8yin:C (2.74) BS04 UQ6 N/A GO:0005739 ... P00163 39601138
    924323 8yin:C (2.74) BS05 A1D6O N/A GO:0005739 ... P00163 39601138
    924324 8yin:D (2.74) BS01 HEM N/A GO:0009055 ... P07143 39601138
    924325 8yin:N (2.74) BS01 HEM N/A GO:0005739 ... P00163 39601138
    924326 8yin:N (2.74) BS02 UQ6 N/A GO:0005739 ... P00163 39601138
    924327 8yin:N (2.74) BS03 HEM N/A GO:0005739 ... P00163 39601138
    924328 8yin:N (2.74) BS04 A1D6O N/A GO:0005739 ... P00163 39601138
    924329 8yin:O (2.74) BS01 HEM N/A GO:0009055 ... P07143 39601138
    924330 8yio:C (2.35) BS01 AZO N/A GO:0005739 ... P00163 N/A
    924331 8yio:C (2.35) BS02 UQ6 N/A GO:0005739 ... P00163 N/A
    924332 8yio:C (2.35) BS03 HEM N/A GO:0005739 ... P00163 N/A
    924333 8yio:C (2.35) BS04 CN5 N/A GO:0005739 ... P00163 N/A
    924334 8yio:C (2.35) BS05 HEM N/A GO:0005739 ... P00163 N/A
    924335 8yio:D (2.35) BS01 HEM N/A GO:0009055 ... P07143 N/A
    924336 8yio:N (2.35) BS01 CN5 N/A GO:0005739 ... P00163 N/A
    924337 8yio:N (2.35) BS02 AZO N/A GO:0005739 ... P00163 N/A
    924338 8yio:N (2.35) BS03 HEM N/A GO:0005739 ... P00163 N/A
    924339 8yio:N (2.35) BS04 HEM N/A GO:0005739 ... P00163 N/A
    924340 8yio:N (2.35) BS05 UQ6 N/A GO:0005739 ... P00163 N/A
    924341 8yio:O (2.35) BS01 HEM N/A GO:0009055 ... P07143 N/A
    924342 8yiv:A (2.101) BS01 peptide N/A N/A F6IQR9 39576860
    924343 8yiv:D (2.101) BS01 peptide N/A N/A P01848 39576860
    924344 8yiv:E (2.101) BS01 peptide N/A N/A P0DTU4 39576860
    924345 8yj2:A (2.261) BS01 peptide N/A N/A F6IQR9 39576860
    924346 8yj2:D (2.261) BS01 peptide N/A N/A P01848 39576860
    924347 8yj2:E (2.261) BS01 peptide N/A N/A P0DTU4 39576860
    924348 8yj4:A (2.2) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924349 8yj4:B (2.2) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924350 8yj4:C (2.2) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924351 8yj4:D (2.2) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924352 8yj4:E (2.2) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924353 8yj4:F (2.2) BS01 A1LYT N/A N/A A0A1B4XBH4 40881614
    924354 8yj6:C (1.37) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924355 8yj7:A (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924356 8yj7:B (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924357 8yj7:C (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924358 8yj7:D (2.8) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924359 8yj8:A (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924360 8yj8:B (1.65) BS01 ZN N/A GO:0005886 ... P0A4G4 38747382
    924361 8yj9:A (2.2) BS01 ROR N/A GO:0030246 ... P55915 N/A
    924362 8yj9:A (2.2) BS02 CA N/A GO:0030246 ... P55915 N/A
    924363 8yj9:A (2.2) BS03 MN N/A GO:0030246 ... P55915 N/A
    924364 8yja:A (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    924365 8yja:B (2.2) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    924366 8yjb:K (4.1) BS01 ZN N/A GO:0004521 ... Q5TA45 40617815
    924367 8yjb:K (4.1) BS02 ZN N/A GO:0004521 ... Q5TA45 40617815
    924368 8yjb:Q (4.1) BS01 MN N/A GO:0000159 ... P67775 40617815
    924369 8yjb:Q (4.1) BS02 MN N/A GO:0000159 ... P67775 40617815
    924370 8yjc:A (1.3) BS01 IHP N/A N/A A0A2S3R7M0 39093838
    924371 8yjh:D (3.68) BS01 dna N/A GO:0000287 ... P39748 39578540
    924372 8yjh:D (3.68) BS02 dna N/A GO:0000287 ... P39748 39578540
    924373 8yjh:D (3.68) BS03 dna N/A GO:0000287 ... P39748 39578540
    924374 8yjh:D (3.68) BS04 dna N/A GO:0000287 ... P39748 39578540
    924375 8yjl:D (3.51) BS01 dna N/A GO:0000287 ... P39748 39578540
    924376 8yjl:D (3.51) BS02 dna N/A GO:0000287 ... P39748 39578540
    924377 8yjl:D (3.51) BS03 dna N/A GO:0000287 ... P39748 39578540
    924378 8yjl:D (3.51) BS04 dna N/A GO:0000287 ... P39748 39578540
    924379 8yjp:A (3.09) BS01 MW9 N/A GO:0004930 ... Q8NFN8 39638804
    924380 8yjp:A (3.09) BS02 MW9 N/A GO:0004930 ... Q8NFN8 39638804
    924381 8yjp:A (3.09) BS03 CLR N/A GO:0004930 ... Q8NFN8 39638804
    924382 8yjp:A (3.09) BS04 CLR N/A GO:0004930 ... Q8NFN8 39638804
    924383 8yjp:A (3.09) BS05 CLR N/A GO:0004930 ... Q8NFN8 39638804
    924384 8yjp:B (3.09) BS01 CLR N/A GO:0004930 ... Q8NFN8 39638804
    924385 8yjp:B (3.09) BS02 CLR N/A GO:0004930 ... Q8NFN8 39638804
    924386 8yjp:B (3.09) BS03 MW9 N/A GO:0004930 ... Q8NFN8 39638804
    924387 8yjp:B (3.09) BS04 MW9 N/A GO:0004930 ... Q8NFN8 39638804
    924388 8yjq:C (3.51) BS01 dna N/A GO:0000307 ... P12004 39578540
    924389 8yjq:D (3.51) BS01 dna N/A GO:0000287 ... P39748 39578540
    924390 8yjq:D (3.51) BS02 dna N/A GO:0000287 ... P39748 39578540
    924391 8yjq:D (3.51) BS03 dna N/A GO:0000287 ... P39748 39578540
    924392 8yjq:D (3.51) BS04 dna N/A GO:0000287 ... P39748 39578540
    924393 8yjr:D (3.51) BS01 dna N/A GO:0000287 ... P39748 39578540
    924394 8yjr:D (3.51) BS02 dna N/A GO:0000287 ... P39748 39578540
    924395 8yjr:D (3.51) BS03 dna N/A GO:0000287 ... P39748 39578540
    924396 8yjr:D (3.51) BS04 dna N/A GO:0000287 ... P39748 39578540
    924397 8yjs:D (3.55) BS01 dna N/A GO:0000287 ... P39748 39578540
    924398 8yjs:D (3.55) BS02 dna N/A GO:0000287 ... P39748 39578540
    924399 8yjs:D (3.55) BS03 dna N/A GO:0000287 ... P39748 39578540
    924400 8yjs:D (3.55) BS04 dna N/A GO:0000287 ... P39748 39578540

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).