SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    924401 9c8c:A (1.54) BS01 FDA N/A GO:0000166 ... F7X6I3 39437336
    924402 9c8c:A (1.54) BS02 NAD N/A GO:0000166 ... F7X6I3 39437336
    924403 9c8c:B (1.54) BS01 FDA N/A GO:0000166 ... F7X6I3 39437336
    924404 9c8c:B (1.54) BS02 A1AV8 N/A GO:0000166 ... F7X6I3 39437336
    924405 9c8c:B (1.54) BS03 NAD N/A GO:0000166 ... F7X6I3 39437336
    924406 9c8j:A () BS01 A1AU5 N/A N/A N/A N/A
    924407 9c8j:B () BS01 A1AU5 N/A N/A N/A N/A
    924408 9c8k:A (3.1) BS01 rna N/A N/A G1TLT8 39893634
    924409 9c8k:B (3.1) BS01 rna N/A N/A G1SS70 39893634
    924410 9c8k:C (3.1) BS01 rna N/A N/A N/A 39893634
    924411 9c8k:D (3.1) BS01 rna N/A N/A N/A 39893634
    924412 9c8k:E (3.1) BS01 rna N/A N/A N/A 39893634
    924413 9c8k:F (3.1) BS01 rna N/A N/A G1TFM5 39893634
    924414 9c8k:G (3.1) BS01 rna N/A N/A G1TM55 39893634
    924415 9c8k:H (3.1) BS01 rna N/A N/A G1SVB0 39893634
    924416 9c8k:I (3.1) BS01 rna N/A N/A G1TJW1 39893634
    924417 9c8k:J (3.1) BS01 rna N/A N/A B7NZS8 39893634
    924418 9c8k:K (3.1) BS01 rna N/A N/A G1TPV3 39893634
    924419 9c8k:L (3.1) BS01 rna N/A N/A G1TRM4 39893634
    924420 9c8k:M (3.1) BS01 rna N/A N/A G1SFR8 39893634
    924421 9c8k:N (3.1) BS01 rna N/A N/A G1SP51 39893634
    924422 9c8k:O (3.1) BS01 rna N/A N/A G1T1F0 39893634
    924423 9c8k:P (3.1) BS01 rna N/A N/A N/A 39893634
    924424 9c8k:Q (3.1) BS01 rna N/A N/A G1SGX4 39893634
    924425 9c8k:R (3.1) BS01 rna N/A N/A G1TU13 39893634
    924426 9c8k:S (3.1) BS01 rna N/A N/A G1TPG3 39893634
    924427 9c8k:T (3.1) BS01 rna N/A N/A N/A 39893634
    924428 9c8k:U (3.1) BS01 rna N/A N/A G1SIZ2 39893634
    924429 9c8k:W (3.1) BS01 rna N/A N/A G1TG89 39893634
    924430 9c8k:X (3.1) BS01 rna N/A N/A G1SZ47 39893634
    924431 9c8k:Y (3.1) BS01 rna N/A N/A A0A5F9D2E6 39893634
    924432 9c8k:Z (3.1) BS01 rna N/A N/A G1TDB3 39893634
    924433 9c8k:a (3.1) BS01 rna N/A N/A G1TFE8 39893634
    924434 9c8k:a (3.1) BS02 ZN N/A N/A G1TFE8 39893634
    924435 9c8k:b (3.1) BS01 rna N/A N/A G1TZ76 39893634
    924436 9c8k:c (3.1) BS01 rna N/A N/A G1TIB4 39893634
    924437 9c8k:d (3.1) BS01 rna N/A N/A G1U7M4 39893634
    924438 9c8k:d (3.1) BS02 ZN N/A N/A G1U7M4 39893634
    924439 9c8k:e (3.1) BS01 rna N/A N/A N/A 39893634
    924440 9c8k:f (3.1) BS01 rna N/A N/A G1SK22 39893634
    924441 9c8k:g (3.1) BS01 rna N/A N/A G1SJB4 39893634
    924442 9c8l:A (1.54) BS01 HEM N/A N/A P00431 39332669
    924443 9c8m:A (1.78) BS01 HEM N/A N/A P00431 39332669
    924444 9c8o:A (2.31) BS01 HEM N/A N/A P00431 39332669
    924445 9c8p:A (2.31) BS01 HEM N/A N/A P00431 39332669
    924446 9c8q:A (1.692) BS01 A1AU4 N/A N/A P0DTD1 39332817
    924447 9c8s:A (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    924448 9c8s:B (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    924449 9c8s:C (2.37) BS01 WTA N/A GO:0003987 ... J9VFT1 N/A
    924450 9c8u:A (3.1) BS01 ZN N/A GO:0006338 ... Q15910 39231985
    924451 9c8u:A (3.1) BS02 ZN N/A GO:0006338 ... Q15910 39231985
    924452 9c8u:A (3.1) BS03 ZN N/A GO:0006338 ... Q15910 39231985
    924453 9c8u:A (3.1) BS04 ZN N/A GO:0006338 ... Q15910 39231985
    924454 9c8u:A (3.1) BS05 ZN N/A GO:0006338 ... Q15910 39231985
    924455 9c8u:A (3.1) BS06 ZN N/A GO:0006338 ... Q15910 39231985
    924456 9c8u:A (3.1) BS07 ZN N/A GO:0006338 ... Q15910 39231985
    924457 9c8v:A (3.39) BS01 ZN N/A GO:0000287 ... P49642 39231985
    924458 9c8v:B (3.39) BS01 SF4 N/A GO:0006269 ... P49643 39231985
    924459 9c8v:C (3.39) BS01 ZN N/A GO:0000166 ... P09884 39231985
    924460 9c8v:C (3.39) BS02 ZN N/A GO:0000166 ... P09884 39231985
    924461 9c90:A (1.38) BS01 HO3 N/A N/A C5B159 39467132
    924462 9c91:A (2.84) BS01 FAD N/A N/A A0A8S7Y2L5 N/A
    924463 9c91:A (2.84) BS02 FMN N/A N/A A0A8S7Y2L5 N/A
    924464 9c91:B (2.84) BS01 SF4 N/A N/A A0A090HXE8 N/A
    924465 9c91:B (2.84) BS02 SRM N/A N/A A0A090HXE8 N/A
    924466 9c92:A (1.9) BS01 A1AVE N/A N/A O00255 N/A
    924467 9c92:B (1.9) BS01 A1AVE N/A N/A O00255 N/A
    924468 9c93:A (1.85) BS01 A1AVF N/A N/A O00255 N/A
    924469 9c93:B (1.85) BS01 A1AVF N/A N/A O00255 N/A
    924470 9c94:A (1.98) BS01 A1AVG N/A N/A O00255 N/A
    924471 9c94:B (1.98) BS01 A1AVG N/A N/A O00255 N/A
    924472 9c96:A (3.0) BS01 peptide N/A N/A Q8WLS4 39786927
    924473 9c9i:A (3.18) BS01 peptide N/A GO:0000045 ... Q5MNZ6 39565846
    924474 9c9i:A (3.18) BS02 peptide N/A GO:0000045 ... Q5MNZ6 39565846
    924475 9c9i:C (3.18) BS01 peptide N/A GO:0000045 ... Q5MNZ6 39565846
    924476 9c9i:E (3.18) BS01 peptide N/A GO:0000045 ... Q5MNZ6 39565846
    924477 9c9i:E (3.18) BS02 peptide N/A GO:0000045 ... Q5MNZ6 39565846
    924478 9c9i:G (3.18) BS01 peptide N/A GO:0000045 ... Q5MNZ6 39565846
    924479 9c9m:A (2.01) BS01 dna N/A GO:0003676 ... P12497 39066328
    924480 9c9m:A (2.01) BS02 dna N/A GO:0003676 ... P12497 39066328
    924481 9c9m:A (2.01) BS03 dna N/A GO:0003676 ... P12497 39066328
    924482 9c9m:A (2.01) BS04 MG N/A GO:0003676 ... P12497 39066328
    924483 9c9m:A (2.01) BS05 MG N/A GO:0003676 ... P12497 39066328
    924484 9c9m:A (2.01) BS06 ZN N/A GO:0003676 ... P12497 39066328
    924485 9c9m:A (2.01) BS07 DLU N/A GO:0003676 ... P12497 39066328
    924486 9c9m:C (2.01) BS01 dna N/A GO:0003676 ... P12497 39066328
    924487 9c9m:D (2.01) BS01 dna N/A GO:0003676 ... P12497 39066328
    924488 9c9m:D (2.01) BS02 dna N/A GO:0003676 ... P12497 39066328
    924489 9c9m:I (2.01) BS01 dna N/A GO:0003676 ... P12497 39066328
    924490 9c9m:I (2.01) BS02 dna N/A GO:0003676 ... P12497 39066328
    924491 9c9m:I (2.01) BS03 dna N/A GO:0003676 ... P12497 39066328
    924492 9c9m:I (2.01) BS04 MG N/A GO:0003676 ... P12497 39066328
    924493 9c9m:I (2.01) BS05 MG N/A GO:0003676 ... P12497 39066328
    924494 9c9m:I (2.01) BS06 ZN N/A GO:0003676 ... P12497 39066328
    924495 9c9m:I (2.01) BS07 DLU N/A GO:0003676 ... P12497 39066328
    924496 9c9m:L (2.01) BS01 dna N/A GO:0003676 ... P12497 39066328
    924497 9c9m:M (2.01) BS01 dna N/A GO:0003676 ... P12497 39066328
    924498 9c9m:M (2.01) BS02 dna N/A GO:0003676 ... P12497 39066328
    924499 9c9p:A (3.1) BS01 rna N/A GO:0003677 ... Q99ZW2 39657754
    924500 9c9p:A (3.1) BS02 dna N/A GO:0003677 ... Q99ZW2 39657754
    924501 9c9p:A (3.1) BS03 dna N/A GO:0003677 ... Q99ZW2 39657754
    924502 9c9v:A (2.63) BS01 A1AVK N/A GO:0005198 ... L7R9I1 39231272
    924503 9c9v:B (2.63) BS01 A1AVK N/A GO:0005198 ... L7R9I1 39231272
    924504 9c9v:C (2.63) BS01 A1AVK N/A GO:0005198 ... L7R9I1 39231272
    924505 9c9v:D (2.63) BS01 A1AVK N/A GO:0005198 ... L7R9I1 39231272
    924506 9c9v:E (2.63) BS01 A1AVK N/A GO:0005198 ... L7R9I1 39231272
    924507 9c9v:F (2.63) BS01 A1AVK N/A GO:0005198 ... L7R9I1 39231272
    924508 9c9w:A (4.25) BS01 dna N/A N/A O95985 39828754
    924509 9c9w:C (4.25) BS01 dna N/A N/A O95985 39828754
    924510 9c9w:C (4.25) BS02 dna N/A N/A O95985 39828754
    924511 9c9w:C (4.25) BS03 MN N/A N/A O95985 39828754
    924512 9c9y:A (3.35) BS01 dna N/A GO:0003677 ... O95985 39828754
    924513 9c9y:A (3.35) BS02 MN N/A GO:0003677 ... O95985 39828754
    924514 9c9y:A (3.35) BS03 MN N/A GO:0003677 ... O95985 39828754
    924515 9ca0:A (3.48) BS01 dna N/A GO:0003677 ... O95985 39828754
    924516 9ca0:A (3.48) BS02 dna N/A GO:0003677 ... O95985 39828754
    924517 9ca0:A (3.48) BS03 MN N/A GO:0003677 ... O95985 39828754
    924518 9ca1:A (3.26) BS01 dna N/A GO:0003677 ... O95985 39828754
    924519 9ca1:A (3.26) BS02 dna N/A GO:0003677 ... O95985 39828754
    924520 9ca1:A (3.26) BS03 MN N/A GO:0003677 ... O95985 39828754
    924521 9ca1:A (3.26) BS04 MN N/A GO:0003677 ... O95985 39828754
    924522 9ca2:A (2.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1932029
    924523 9ca4:A (3.01) BS01 rna N/A N/A O95985 39828754
    924524 9ca4:A (3.01) BS02 rna N/A N/A O95985 39828754
    924525 9ca4:A (3.01) BS03 MN N/A N/A O95985 39828754
    924526 9ca4:A (3.01) BS04 MN N/A N/A O95985 39828754
    924527 9cag:A (3.33) BS01 rna N/A N/A O95985 39828754
    924528 9cag:A (3.33) BS02 MN N/A N/A O95985 39828754
    924529 9cag:A (3.33) BS03 MN N/A N/A O95985 39828754
    924530 9cah:A (3.16) BS01 MN N/A N/A O95985 39828754
    924531 9cah:A (3.16) BS02 ZN N/A N/A O95985 39828754
    924532 9cah:A (3.16) BS03 ZN N/A N/A O95985 39828754
    924533 9cah:A (3.16) BS04 ZN N/A N/A O95985 39828754
    924534 9cai:AA (2.59) BS01 rna N/A GO:0000028 ... P46769 39209556
    924535 9cai:AB (2.59) BS01 rna N/A GO:0003735 ... P48154 39209556
    924536 9cai:AC (2.59) BS01 rna N/A GO:0003723 ... P51403 39209556
    924537 9cai:AD (2.59) BS01 rna N/A GO:0003723 ... P48152 39209556
    924538 9cai:AE (2.59) BS01 rna N/A GO:0003723 ... Q9N3X2 39209556
    924539 9cai:AF (2.59) BS01 rna N/A GO:0000028 ... P49041 39209556
    924540 9cai:AG (2.59) BS01 rna N/A GO:0003735 ... Q9NEN6 39209556
    924541 9cai:AH (2.59) BS01 rna N/A GO:0003735 ... Q23312 39209556
    924542 9cai:AI (2.59) BS01 rna N/A GO:0000462 ... P48156 39209556
    924543 9cai:AI (2.59) BS02 rna N/A GO:0000462 ... P48156 39209556
    924544 9cai:AJ (2.59) BS01 rna N/A GO:0003723 ... Q20228 39209556
    924545 9cai:AK (2.59) BS01 rna N/A GO:0003723 ... O01869 39209556
    924546 9cai:AL (2.59) BS01 rna N/A GO:0003735 ... Q20206 39209556
    924547 9cai:AM (2.59) BS01 rna N/A GO:0003735 ... P49196 39209556
    924548 9cai:AN (2.59) BS01 rna N/A GO:0003735 ... P51404 39209556
    924549 9cai:AN (2.59) BS02 rna N/A GO:0003735 ... P51404 39209556
    924550 9cai:AO (2.59) BS01 rna N/A GO:0000028 ... P48150 39209556
    924551 9cai:AP (2.59) BS01 rna N/A GO:0000028 ... Q9XVP0 39209556
    924552 9cai:AP (2.59) BS02 rna N/A GO:0000028 ... Q9XVP0 39209556
    924553 9cai:AQ (2.59) BS01 rna N/A GO:0000462 ... Q22054 39209556
    924554 9cai:AR (2.59) BS01 rna N/A GO:0003735 ... O01692 39209556
    924555 9cai:AS (2.59) BS01 rna N/A GO:0003676 ... O18240 39209556
    924556 9cai:AT (2.59) BS01 rna N/A GO:0000028 ... O18650 39209556
    924557 9cai:AU (2.59) BS01 rna N/A GO:0003735 ... Q8WQA8 39209556
    924558 9cai:AW (2.59) BS01 rna N/A GO:0003735 ... O17218 39209556
    924559 9cai:AX (2.59) BS01 rna N/A GO:0002181 ... Q19877 39209556
    924560 9cai:AY (2.59) BS01 rna N/A GO:0003735 ... Q1XFY9 39209556
    924561 9cai:AZ (2.59) BS01 rna N/A GO:0003735 ... P52821 39209556
    924562 9cai:Aa (2.59) BS01 rna N/A GO:0002181 ... O45499 39209556
    924563 9cai:Ab (2.59) BS01 rna N/A GO:0000028 ... Q9TXP0 39209556
    924564 9cai:Ac (2.59) BS01 rna N/A GO:0000028 ... Q95Y04 39209556
    924565 9cai:Ad (2.59) BS01 rna N/A GO:0002181 ... P90983 39209556
    924566 9cai:Ae (2.59) BS01 rna N/A GO:0003735 ... Q18231 39209556
    924567 9cai:Af (2.59) BS01 rna N/A GO:0003735 ... P37165 39209556
    924568 9cai:CA (2.59) BS01 rna N/A GO:0002181 ... Q9XVF7 39209556
    924569 9cai:CA (2.59) BS02 rna N/A GO:0002181 ... Q9XVF7 39209556
    924570 9cai:CB (2.59) BS01 rna N/A GO:0003723 ... P50880 39209556
    924571 9cai:CC (2.59) BS01 rna N/A GO:0003723 ... O02056 39209556
    924572 9cai:CC (2.59) BS02 rna N/A GO:0003723 ... O02056 39209556
    924573 9cai:CD (2.59) BS01 rna N/A GO:0000027 ... P49405 39209556
    924574 9cai:CD (2.59) BS02 rna N/A GO:0000027 ... P49405 39209556
    924575 9cai:CE (2.59) BS01 rna N/A GO:0002181 ... P47991 39209556
    924576 9cai:CF (2.59) BS01 rna N/A GO:0000463 ... O01802 39209556
    924577 9cai:CF (2.59) BS02 rna N/A GO:0000463 ... O01802 39209556
    924578 9cai:CG (2.59) BS01 rna N/A GO:0000470 ... Q966C6 39209556
    924579 9cai:CG (2.59) BS02 rna N/A GO:0000470 ... Q966C6 39209556
    924580 9cai:CH (2.59) BS01 rna N/A GO:0002181 ... Q95Y90 39209556
    924581 9cai:CI (2.59) BS01 rna N/A GO:0003735 ... Q09533 39209556
    924582 9cai:CI (2.59) BS02 rna N/A GO:0003735 ... Q09533 39209556
    924583 9cai:CI (2.59) BS03 rna N/A GO:0003735 ... Q09533 39209556
    924584 9cai:CJ (2.59) BS01 rna N/A GO:0003723 ... Q19162 39209556
    924585 9cai:CJ (2.59) BS02 rna N/A GO:0003723 ... Q19162 39209556
    924586 9cai:CJ (2.59) BS03 rna N/A GO:0003723 ... Q19162 39209556
    924587 9cai:CL (2.59) BS01 rna N/A GO:0003723 ... P91128 39209556
    924588 9cai:CM (2.59) BS01 rna N/A GO:0003723 ... Q9XVE9 39209556
    924589 9cai:CN (2.59) BS01 rna N/A GO:0002181 ... P91374 39209556
    924590 9cai:CN (2.59) BS02 rna N/A GO:0002181 ... P91374 39209556
    924591 9cai:CO (2.59) BS01 rna N/A GO:0003729 ... Q27389 39209556
    924592 9cai:CP (2.59) BS01 rna N/A GO:0002181 ... Q9BL19 39209556
    924593 9cai:CP (2.59) BS02 rna N/A GO:0002181 ... Q9BL19 39209556
    924594 9cai:CQ (2.59) BS01 rna N/A GO:0003723 ... O45946 39209556
    924595 9cai:CR (2.59) BS01 rna N/A GO:0003723 ... O02639 39209556
    924596 9cai:CR (2.59) BS02 rna N/A GO:0003723 ... O02639 39209556
    924597 9cai:CS (2.59) BS01 rna N/A GO:0002181 ... O44480 39209556
    924598 9cai:CS (2.59) BS02 rna N/A GO:0002181 ... O44480 39209556
    924599 9cai:CT (2.59) BS01 rna N/A GO:0003735 ... P34334 39209556
    924600 9cai:CT (2.59) BS02 rna N/A GO:0003735 ... P34334 39209556

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).