SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    924801 9cck:I (1.84) BS03 CU N/A N/A A9A2L1 39823305
    924802 9cck:I (1.84) BS04 CU N/A N/A A9A2L1 39823305
    924803 9cck:J (1.84) BS01 CU N/A N/A A9A2L1 39823305
    924804 9cck:J (1.84) BS02 CU N/A N/A A9A2L1 39823305
    924805 9cck:J (1.84) BS03 CU N/A N/A A9A2L1 39823305
    924806 9cck:J (1.84) BS04 CU N/A N/A A9A2L1 39823305
    924807 9cck:J (1.84) BS05 CU N/A N/A A9A2L1 39823305
    924808 9cck:K (1.84) BS01 CU N/A N/A A9A2L1 39823305
    924809 9cck:K (1.84) BS02 CU N/A N/A A9A2L1 39823305
    924810 9cck:K (1.84) BS03 CU N/A N/A A9A2L1 39823305
    924811 9cck:K (1.84) BS04 CU N/A N/A A9A2L1 39823305
    924812 9cck:L (1.84) BS01 CU N/A N/A A9A2L1 39823305
    924813 9cck:L (1.84) BS02 CU N/A N/A A9A2L1 39823305
    924814 9cck:L (1.84) BS03 CU N/A N/A A9A2L1 39823305
    924815 9cck:L (1.84) BS04 CU N/A N/A A9A2L1 39823305
    924816 9ccx:A (2.3) BS01 A1AVZ N/A N/A A0A1S0WIC1 39610720
    924817 9ccx:A (2.3) BS02 MN N/A N/A A0A1S0WIC1 39610720
    924818 9ccx:A (2.3) BS03 MN N/A N/A A0A1S0WIC1 39610720
    924819 9ccy:A (2.05) BS01 A1AVY N/A N/A A0A1S0WIC1 39610720
    924820 9ccy:A (2.05) BS02 MN N/A N/A A0A1S0WIC1 39610720
    924821 9ccy:A (2.05) BS03 MN N/A N/A A0A1S0WIC1 39610720
    924822 9ccz:A (2.1) BS01 A1AV0 N/A N/A A0A1S0WIC1 39610720
    924823 9ccz:A (2.1) BS02 MN N/A N/A A0A1S0WIC1 39610720
    924824 9ccz:A (2.1) BS03 MN N/A N/A A0A1S0WIC1 39610720
    924825 9cd0:A (1.72) BS01 A1AVX N/A N/A A0A1S0WIC1 39610720
    924826 9cd0:A (1.72) BS02 MN N/A N/A A0A1S0WIC1 39610720
    924827 9cd0:A (1.72) BS03 MN N/A N/A A0A1S0WIC1 39610720
    924828 9cd1:A (2.0) BS01 A1AVW N/A N/A A0A1S0WIC1 39610720
    924829 9cd1:A (2.0) BS02 MN N/A N/A A0A1S0WIC1 39610720
    924830 9cd1:A (2.0) BS03 MN N/A N/A A0A1S0WIC1 39610720
    924831 9cd5:A (2.939) BS01 A1AV2 N/A GO:0004672 ... P11362 39258897
    924832 9cd5:B (2.939) BS01 A1AV2 N/A GO:0004672 ... P11362 39258897
    924833 9cd7:A (2.53) BS01 A1AV2 N/A GO:0004672 ... P22607 39258897
    924834 9cd7:B (2.53) BS01 A1AV2 N/A GO:0004672 ... P22607 39258897
    924835 9cd7:C (2.53) BS01 A1AV2 N/A GO:0004672 ... P22607 39258897
    924836 9cdb:A (3.6) BS01 rna N/A GO:0004000 ... A0A3C0QUR5 39471810
    924837 9cdb:A (3.6) BS02 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924838 9cdb:A (3.6) BS03 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924839 9cdb:A (3.6) BS04 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924840 9cdb:B (3.6) BS01 rna N/A GO:0004000 ... A0A3C0QUR5 39471810
    924841 9cdb:B (3.6) BS02 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924842 9cdb:B (3.6) BS03 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924843 9cdb:B (3.6) BS04 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924844 9cdb:C (3.6) BS01 rna N/A GO:0004000 ... A0A3C0QUR5 39471810
    924845 9cdb:C (3.6) BS02 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924846 9cdb:C (3.6) BS03 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924847 9cdb:D (3.6) BS01 rna N/A GO:0004000 ... A0A3C0QUR5 39471810
    924848 9cdb:D (3.6) BS02 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924849 9cdb:D (3.6) BS03 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924850 9cdb:D (3.6) BS04 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924851 9cdb:E (3.6) BS01 rna N/A GO:0004000 ... A0A3C0QUR5 39471810
    924852 9cdb:E (3.6) BS02 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924853 9cdb:E (3.6) BS03 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924854 9cdb:E (3.6) BS04 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924855 9cdb:F (3.6) BS01 rna N/A GO:0004000 ... A0A3C0QUR5 39471810
    924856 9cdb:F (3.6) BS02 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924857 9cdb:F (3.6) BS03 ATP N/A GO:0004000 ... A0A3C0QUR5 39471810
    924858 9cdb:F (3.6) BS04 MG N/A GO:0004000 ... A0A3C0QUR5 39471810
    924859 9cdc:A (3.08) BS01 RET N/A N/A N/A 39900567
    924860 9cdc:A (3.08) BS02 CLR N/A N/A N/A 39900567
    924861 9cdc:A (3.08) BS03 CLR N/A N/A N/A 39900567
    924862 9cdc:A (3.08) BS04 CLR N/A N/A N/A 39900567
    924863 9cdd:A (3.05) BS01 RET N/A N/A N/A 39900567
    924864 9cdd:A (3.05) BS02 CLR N/A N/A N/A 39900567
    924865 9cdd:A (3.05) BS03 CLR N/A N/A N/A 39900567
    924866 9cde:A (3.44) BS01 RET N/A N/A N/A 39900567
    924867 9cde:A (3.44) BS02 CLR N/A N/A N/A 39900567
    924868 9cde:A (3.44) BS03 CLR N/A N/A N/A 39900567
    924869 9cdk:A (1.61) BS01 XEK N/A N/A P0DTD1 N/A
    924870 9cdl:A (1.52) BS01 XEK N/A N/A P0DTD1 N/A
    924871 9cdm:A (2.05) BS01 XEK N/A N/A P0DTD1 N/A
    924872 9cdr:A (3.91) BS01 HEM N/A GO:0000287 ... P76129 39511182
    924873 9cdr:B (3.91) BS01 HEM N/A GO:0000287 ... P76129 39511182
    924874 9cdx:A (2.38) BS01 A1AZP N/A N/A Q12852 39670820
    924875 9cdy:A (1.5) BS01 A1AZ8 N/A N/A Q12852 39670820
    924876 9cdy:A (1.5) BS02 MG N/A N/A Q12852 39670820
    924877 9ce0:A (3.97) BS01 HEM N/A GO:0000287 ... P76129 39511182
    924878 9ce0:B (3.97) BS01 HEM N/A GO:0000287 ... P76129 39511182
    924879 9ce3:A (2.9) BS01 peptide N/A GO:0001843 ... P49815 39565846
    924880 9ce3:B (2.9) BS01 peptide N/A GO:0001843 ... P49815 39565846
    924881 9ce4:A (1.31) BS01 A1AV4 N/A GO:0000077 ... O14757 39231262
    924882 9cec:A (2.36) BS01 A1AV3 N/A N/A P0DTD1 39746101
    924883 9ced:A (1.82) BS01 A1AV7 N/A N/A P0DTD1 39746101
    924884 9cek:A (1.38) BS01 A1AV5 N/A N/A P0DTD1 39746101
    924885 9cek:B (1.38) BS01 A1AV5 N/A N/A P0DTD1 39746101
    924886 9cek:B (1.38) BS02 A1AV6 N/A N/A P0DTD1 39746101
    924887 9cer:P (4.7) BS01 rna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924888 9cer:P (4.7) BS02 ZN N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924889 9ces:P (3.28) BS01 dna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924890 9ces:P (3.28) BS02 dna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924891 9ces:P (3.28) BS03 rna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924892 9ces:P (3.28) BS04 ZN N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924893 9cet:P (3.0) BS01 dna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924894 9cet:P (3.0) BS02 dna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924895 9cet:P (3.0) BS03 rna N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924896 9cet:P (3.0) BS04 ZN N/A GO:0003677 ... L1JXG4
    P0AEX9
    39208796
    924897 9ceu:P (3.29) BS01 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924898 9ceu:P (3.29) BS02 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924899 9ceu:P (3.29) BS03 rna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924900 9ceu:P (3.29) BS04 ZN N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924901 9cev:P (3.26) BS01 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924902 9cev:P (3.26) BS02 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924903 9cev:P (3.26) BS03 rna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924904 9cev:P (3.26) BS04 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924905 9cev:P (3.26) BS05 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924906 9cev:P (3.26) BS06 ZN N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924907 9cew:P (2.88) BS01 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924908 9cew:P (2.88) BS02 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924909 9cew:P (2.88) BS03 rna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924910 9cew:P (2.88) BS04 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924911 9cew:P (2.88) BS05 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924912 9cew:P (2.88) BS06 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924913 9cew:P (2.88) BS07 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924914 9cew:P (2.88) BS08 ZN N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924915 9cex:P (3.27) BS01 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924916 9cex:P (3.27) BS02 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924917 9cex:P (3.27) BS03 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924918 9cex:P (3.27) BS04 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924919 9cex:P (3.27) BS05 rna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924920 9cex:P (3.27) BS06 ZN N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924921 9cex:P (3.27) BS07 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924922 9cex:P (3.27) BS08 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924923 9cey:P (3.22) BS01 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924924 9cey:P (3.22) BS02 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924925 9cey:P (3.22) BS03 rna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924926 9cey:P (3.22) BS04 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924927 9cey:P (3.22) BS05 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924928 9cey:P (3.22) BS06 ZN N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924929 9cez:P (3.41) BS01 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924930 9cez:P (3.41) BS02 dna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924931 9cez:P (3.41) BS03 rna N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924932 9cez:P (3.41) BS04 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924933 9cez:P (3.41) BS05 MG N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924934 9cez:P (3.41) BS06 ZN N/A GO:0005515 ... A0A0L0H5U9
    P0AEX9
    39208796
    924935 9cf0:P (3.47) BS01 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924936 9cf0:P (3.47) BS02 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924937 9cf0:P (3.47) BS03 rna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924938 9cf1:P (3.52) BS01 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924939 9cf1:P (3.52) BS02 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924940 9cf1:P (3.52) BS03 rna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924941 9cf1:P (3.52) BS04 ZN N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924942 9cf2:P (3.15) BS01 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924943 9cf2:P (3.15) BS02 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924944 9cf2:P (3.15) BS03 rna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924945 9cf2:P (3.15) BS04 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924946 9cf2:P (3.15) BS05 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924947 9cf2:P (3.15) BS06 ZN N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924948 9cf2:P (3.15) BS07 MG N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924949 9cf3:P (3.2) BS01 rna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924950 9cf3:P (3.2) BS02 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924951 9cf3:P (3.2) BS03 dna N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924952 9cf3:P (3.2) BS04 ZN N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924953 9cf3:P (3.2) BS05 MG N/A GO:0005515 ... A0A0B7NJM7
    P0AEX9
    39208796
    924954 9cf9:A (2.0) BS01 A1AWA N/A N/A P0DTD1 39746101
    924955 9cf9:B (2.0) BS01 A1AWA N/A N/A P0DTD1 39746101
    924956 9cfb:A (1.45) BS01 A1AWB N/A N/A P0DTD1 39746101
    924957 9cfb:B (1.45) BS01 A1AWB N/A N/A P0DTD1 39746101
    924958 9cft:A (2.3) BS01 peptide N/A N/A P52293 39692478
    924959 9cfu:B (2.8) BS01 ADP N/A N/A P68135 N/A
    924960 9cfu:C (2.8) BS01 MG N/A N/A P68135 N/A
    924961 9cfu:C (2.8) BS02 ADP N/A N/A P68135 N/A
    924962 9cfu:D (2.8) BS01 ADP N/A N/A P68135 N/A
    924963 9cfu:P (2.8) BS01 ADP N/A N/A Q9WTI7 N/A
    924964 9cfu:P (2.8) BS02 MG N/A N/A Q9WTI7 N/A
    924965 9cfv:B (2.7) BS01 ADP N/A N/A P68135 N/A
    924966 9cfv:C (2.7) BS01 ADP N/A N/A P68135 N/A
    924967 9cfv:D (2.7) BS01 ADP N/A N/A P68135 N/A
    924968 9cfw:B (3.0) BS01 ADP N/A N/A P68135 N/A
    924969 9cfw:B (3.0) BS02 MG N/A N/A P68135 N/A
    924970 9cfw:C (3.0) BS01 ADP N/A N/A P68135 N/A
    924971 9cfw:D (3.0) BS01 ADP N/A N/A P68135 N/A
    924972 9cfw:P (3.0) BS01 ADP N/A N/A Q9WTI7 N/A
    924973 9cfx:B (2.7) BS01 ADP N/A N/A P68135 N/A
    924974 9cfx:B (2.7) BS02 MG N/A N/A P68135 N/A
    924975 9cfx:C (2.7) BS01 ADP N/A N/A P68135 N/A
    924976 9cfx:D (2.7) BS01 ADP N/A N/A P68135 N/A
    924977 9cfx:D (2.7) BS02 MG N/A N/A P68135 N/A
    924978 9cg4:E (3.37) BS01 dna N/A N/A Q9Y2M0 N/A
    924979 9cg4:E (3.37) BS02 dna N/A N/A Q9Y2M0 N/A
    924980 9cg5:0 (2.59) BS01 rna N/A GO:0003735 ... C3SME7 39222680
    924981 9cg5:1 (2.59) BS01 rna N/A GO:0003735 ... B7MGC4 39222680
    924982 9cg5:2 (2.59) BS01 rna N/A GO:0002181 ... P0A7Q1 39222680
    924983 9cg5:3 (2.59) BS01 rna N/A GO:0003735 ... A0A0E2L017 39222680
    924984 9cg5:3 (2.59) BS02 ZN N/A GO:0003735 ... A0A0E2L017 39222680
    924985 9cg5:4 (2.59) BS01 rna N/A GO:0003735 ... P0A7N0 39222680
    924986 9cg5:4 (2.59) BS02 rna N/A GO:0003735 ... P0A7N0 39222680
    924987 9cg5:4 (2.59) BS03 ZN N/A GO:0003735 ... P0A7N0 39222680
    924988 9cg5:B (2.59) BS01 rna N/A GO:0003735 ... C3TPN2 39222680
    924989 9cg5:C (2.59) BS01 rna N/A GO:0003676 ... B7MCS9 39222680
    924990 9cg5:D (2.59) BS01 rna N/A GO:0000028 ... P0A7V8 39222680
    924991 9cg5:E (2.59) BS01 rna N/A GO:0000028 ... P0A7W1 39222680
    924992 9cg5:F (2.59) BS01 rna N/A GO:0002181 ... P02358 39222680
    924993 9cg5:G (2.59) BS01 rna N/A GO:0000028 ... P02359 39222680
    924994 9cg5:H (2.59) BS01 rna N/A GO:0000028 ... C3SR12 39222680
    924995 9cg5:I (2.59) BS01 rna N/A GO:0000028 ... C3SRY2 39222680
    924996 9cg5:I (2.59) BS02 rna N/A GO:0000028 ... C3SRY2 39222680
    924997 9cg5:J (2.59) BS01 rna N/A GO:0000028 ... C3SQT7 39222680
    924998 9cg5:K (2.59) BS01 rna N/A GO:0000028 ... C3SR57 39222680
    924999 9cg5:K (2.59) BS02 IAS N/A GO:0000028 ... C3SR57 39222680
    925000 9cg5:L (2.59) BS01 rna N/A GO:0000049 ... A0A0F1AUC4 39222680

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).