SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    924801 8ylr:SS (3.9) BS01 rna N/A GO:0002181 ... P0CX35 39789210
    924802 8ylr:ST (3.9) BS01 rna N/A GO:0000462 ... P0CX37 39789210
    924803 8ylr:SU (3.9) BS01 rna N/A GO:0002181 ... P26786 39789210
    924804 8ylr:SV (3.9) BS01 rna N/A GO:0000462 ... P0CX39 39789210
    924805 8ylr:SV (3.9) BS02 rna N/A GO:0000462 ... P0CX39 39789210
    924806 8ylr:SW (3.9) BS01 rna N/A GO:0000462 ... O13516 39789210
    924807 8ylr:SX (3.9) BS01 rna N/A GO:0000028 ... P0CX47 39789210
    924808 8ylr:SY (3.9) BS01 rna N/A GO:0000462 ... P05756 39789210
    924809 8ylr:SZ (3.9) BS01 rna N/A GO:0000028 ... P39516 39789210
    924810 8ylr:Sa (3.9) BS01 rna N/A GO:0000447 ... P0C0V8 39789210
    924811 8ylr:Sb (3.9) BS01 rna N/A GO:0002181 ... P0C0W1 39789210
    924812 8ylr:Sc (3.9) BS01 rna N/A GO:0000462 ... P0CX29 39789210
    924813 8ylr:Sd (3.9) BS01 rna N/A GO:0000462 ... P0CX31 39789210
    924814 8ylr:Se (3.9) BS01 rna N/A GO:0003735 ... P39938 39789210
    924815 8ylr:Sf (3.9) BS01 rna N/A GO:0000028 ... P35997 39789210
    924816 8ylr:Sg (3.9) BS01 rna N/A GO:0002181 ... P0CX33 39789210
    924817 8ylr:T (3.9) BS01 rna N/A GO:0002181 ... P0CX82 39789210
    924818 8ylr:T (3.9) BS02 rna N/A GO:0002181 ... P0CX82 39789210
    924819 8ylr:U (3.9) BS01 rna N/A GO:0002181 ... P0CX23 39789210
    924820 8ylr:U (3.9) BS02 rna N/A GO:0002181 ... P0CX23 39789210
    924821 8ylr:V (3.9) BS01 rna N/A GO:0002181 ... Q02753 39789210
    924822 8ylr:V (3.9) BS02 rna N/A GO:0002181 ... Q02753 39789210
    924823 8ylr:W (3.9) BS01 rna N/A GO:0003735 ... P05749 39789210
    924824 8ylr:X (3.9) BS01 rna N/A GO:0002181 ... P0CX41 39789210
    924825 8ylr:X (3.9) BS02 rna N/A GO:0002181 ... P0CX41 39789210
    924826 8ylr:Y (3.9) BS01 rna N/A GO:0003735 ... P04449 39789210
    924827 8ylr:Z (3.9) BS01 rna N/A GO:0003735 ... P04456 39789210
    924828 8ylr:Z (3.9) BS02 rna N/A GO:0003735 ... P04456 39789210
    924829 8ylr:a (3.9) BS01 rna N/A GO:0002181 ... P05743 39789210
    924830 8ylr:a (3.9) BS02 rna N/A GO:0002181 ... P05743 39789210
    924831 8ylr:b (3.9) BS01 rna N/A GO:0002181 ... P0C2H6 39789210
    924832 8ylr:c (3.9) BS01 rna N/A GO:0002181 ... P02406 39789210
    924833 8ylr:d (3.9) BS01 rna N/A GO:0002181 ... P05747 39789210
    924834 8ylr:e (3.9) BS01 rna N/A GO:0002181 ... P14120 39789210
    924835 8ylr:f (3.9) BS01 rna N/A GO:0002181 ... P0C2H8 39789210
    924836 8ylr:g (3.9) BS01 rna N/A GO:0002181 ... P38061 39789210
    924837 8ylr:h (3.9) BS01 rna N/A GO:0000027 ... P05744 39789210
    924838 8ylr:i (3.9) BS01 rna N/A GO:0002181 ... P87262 39789210
    924839 8ylr:j (3.9) BS01 rna N/A GO:0000463 ... P0CX84 39789210
    924840 8ylr:j (3.9) BS02 rna N/A GO:0000463 ... P0CX84 39789210
    924841 8ylr:k (3.9) BS01 rna N/A GO:0000470 ... P05745 39789210
    924842 8ylr:l (3.9) BS01 rna N/A GO:0000448 ... P49166 39789210
    924843 8ylr:l (3.9) BS02 rna N/A GO:0000448 ... P49166 39789210
    924844 8ylr:m (3.9) BS01 rna N/A GO:0002181 ... P49167 39789210
    924845 8ylr:n (3.9) BS01 rna N/A GO:0002181 ... P04650 39789210
    924846 8ylr:n (3.9) BS02 rna N/A GO:0002181 ... P04650 39789210
    924847 8ylr:o (3.9) BS01 rna N/A GO:0003735 ... P0CH08 39789210
    924848 8ylr:q (3.9) BS01 rna N/A GO:0002181 ... P0CX27 39789210
    924849 8ylr:q (3.9) BS02 rna N/A GO:0002181 ... P0CX27 39789210
    924850 8ylr:r (3.9) BS01 rna N/A GO:0002181 ... P0CX25 39789210
    924851 8ylr:v (3.9) BS01 rna N/A GO:0002182 ... P16521 39789210
    924852 8ylr:x (3.9) BS01 rna N/A GO:0003746 ... P32324 39789210
    924853 8ylr:x (3.9) BS02 rna N/A GO:0003746 ... P32324 39789210
    924854 8ylr:x (3.9) BS03 rna N/A GO:0003746 ... P32324 39789210
    924855 8yls:A (1.93) BS01 A1LYZ N/A GO:0008233 ... P0DTC1 38941718
    924856 8ylt:A (3.09) BS01 NAD N/A N/A N/A 39059542
    924857 8ylt:B (3.09) BS01 NAD N/A N/A N/A 39059542
    924858 8ylt:C (3.09) BS01 NAD N/A N/A N/A 39059542
    924859 8ylt:D (3.09) BS01 NAD N/A N/A N/A 39059542
    924860 8ylu:A (2.8) BS01 dna N/A GO:0000166 ... P07065 39379365
    924861 8ylu:A (2.8) BS02 dna N/A GO:0000166 ... P07065 39379365
    924862 8ylu:B (2.8) BS01 dna N/A GO:0000166 ... P07065 39379365
    924863 8ylu:B (2.8) BS02 dna N/A GO:0000166 ... P07065 39379365
    924864 8ylu:C (2.8) BS01 dna N/A GO:0000166 ... A0A346FJ89 39379365
    924865 8ylu:C (2.8) BS02 dna N/A GO:0000166 ... A0A346FJ89 39379365
    924866 8ylu:D (2.8) BS01 dna N/A GO:0000166 ... A0A346FJ89 39379365
    924867 8ylu:D (2.8) BS02 dna N/A GO:0000166 ... A0A346FJ89 39379365
    924868 8ylw:A (2.5) BS01 KAA N/A GO:0000166 ... Q8IDJ8 N/A
    924869 8ylw:B (2.5) BS01 KAA N/A GO:0000166 ... Q8IDJ8 N/A
    924870 8ylw:C (2.5) BS01 KAA N/A GO:0000166 ... Q8IDJ8 N/A
    924871 8ylw:D (2.5) BS01 KAA N/A GO:0000166 ... Q8IDJ8 N/A
    924872 8ylx:A (3.18) BS01 OCA N/A GO:0003677 ... P02768 N/A
    924873 8ylx:A (3.18) BS02 OCA N/A GO:0003677 ... P02768 N/A
    924874 8ylx:A (3.18) BS03 OCA N/A GO:0003677 ... P02768 N/A
    924875 8yly:A (1.49) BS01 GDP N/A GO:0000287 ... P33171 N/A
    924876 8ym0:A (3.05) BS01 OCA N/A GO:0003677 ... P02768 N/A
    924877 8ym0:A (3.05) BS02 OCA N/A GO:0003677 ... P02768 N/A
    924878 8ym0:A (3.05) BS03 OCA N/A GO:0003677 ... P02768 N/A
    924879 8ym0:A (3.05) BS04 OCA N/A GO:0003677 ... P02768 N/A
    924880 8ym0:A (3.05) BS05 OCA N/A GO:0003677 ... P02768 N/A
    924881 8ym2:A (2.0) BS01 peptide ? N/A Q8BIZ1 38759928
    924882 8ym3:A (2.05) BS01 GDP N/A GO:0000287 ... P33171 38971279
    924883 8ym7:A (2.83) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 N/A
    924884 8ym7:A (2.83) BS02 A1LZJ 1.14.99.66 GO:0005634 ... O60341 N/A
    924885 8ymb:A (2.95) BS01 A1LY0 N/A N/A O60885 39735913
    924886 8ymb:D (2.95) BS01 A1LY0 N/A N/A P40337 39735913
    924887 8ymb:F (2.95) BS01 A1LY0 N/A N/A O60885 39735913
    924888 8ymb:I (2.95) BS01 A1LY0 N/A N/A P40337 39735913
    924889 8ymc:A (2.7) BS01 ATP N/A GO:0000917 ... P0A9R7 39434966
    924890 8ymc:A (2.7) BS02 ATP N/A GO:0000917 ... P0A9R7 39434966
    924891 8ymc:B (2.7) BS01 ATP N/A GO:0000917 ... P0A9R7 39434966
    924892 8ymc:B (2.7) BS02 ATP N/A GO:0000917 ... P0A9R7 39434966
    924893 8ymd:A (1.08) BS01 GLC N/A GO:0030246 ... P17931 39227094
    924894 8ymd:A (1.08) BS02 GLA N/A GO:0030246 ... P17931 39227094
    924895 8yme:A (1.18) BS01 A1LZZ N/A N/A O60885 N/A
    924896 8ymf:A (1.015) BS01 A1LZB N/A N/A O60885 N/A
    924897 8ymg:A (1.007) BS01 A1LZC N/A N/A O60885 38876176
    924898 8ymh:A (1.04) BS01 A1LZE N/A N/A O60885 38876176
    924899 8ymi:A (1.01) BS01 A1LZF N/A N/A O60885 N/A
    924900 8ymy:A (1.01) BS01 GLC N/A GO:0004553 ... H3K419 N/A
    924901 8ymy:A (1.01) BS02 BGC N/A GO:0004553 ... H3K419 N/A
    924902 8ymy:A (1.01) BS03 BGC N/A GO:0004553 ... H3K419 N/A
    924903 8ymy:A (1.01) BS04 BGC N/A GO:0004553 ... H3K419 N/A
    924904 8ymz:E (2.95) BS01 dna N/A N/A O43298 39344089
    924905 8ymz:E (2.95) BS02 dna N/A N/A O43298 39344089
    924906 8ymz:E (2.95) BS03 ZN N/A N/A O43298 39344089
    924907 8ymz:E (2.95) BS04 ZN N/A N/A O43298 39344089
    924908 8ymz:E (2.95) BS05 ZN N/A N/A O43298 39344089
    924909 8ymz:F (2.95) BS01 dna N/A N/A O43298 39344089
    924910 8ymz:F (2.95) BS02 dna N/A N/A O43298 39344089
    924911 8ymz:F (2.95) BS03 ZN N/A N/A O43298 39344089
    924912 8ymz:F (2.95) BS04 ZN N/A N/A O43298 39344089
    924913 8yn0:A (2.49) BS01 ATP N/A GO:0000304 ... Q9SU72 39939760
    924914 8yn0:A (2.49) BS02 APR N/A GO:0000304 ... Q9SU72 39939760
    924915 8yn0:B (2.49) BS01 APR N/A GO:0000304 ... Q9SU72 39939760
    924916 8yn0:B (2.49) BS02 ATP N/A GO:0000304 ... Q9SU72 39939760
    924917 8yn0:C (2.49) BS01 ATP N/A GO:0006629 ... Q4F883 39939760
    924918 8yn0:C (2.49) BS02 APR N/A GO:0006629 ... Q4F883 39939760
    924919 8yn0:E (2.49) BS01 APR N/A GO:0006629 ... Q4F883 39939760
    924920 8yn0:E (2.49) BS02 ATP N/A GO:0006629 ... Q4F883 39939760
    924921 8yn1:A (3.09) BS01 APR N/A GO:0000304 ... Q9SU72 39939760
    924922 8yn1:A (3.09) BS02 ATP N/A GO:0000304 ... Q9SU72 39939760
    924923 8yn1:B (3.09) BS01 APR N/A GO:0006629 ... Q4F883 39939760
    924924 8yn1:B (3.09) BS02 ATP N/A GO:0006629 ... Q4F883 39939760
    924925 8yn2:R (2.66) BS01 HSM N/A GO:0004930 ... P35367 39333117
    924926 8yn2:R (2.66) BS02 CLR N/A GO:0004930 ... P35367 39333117
    924927 8yn2:R (2.66) BS03 CLR N/A GO:0004930 ... P35367 39333117
    924928 8yn2:R (2.66) BS04 CLR N/A GO:0004930 ... P35367 39333117
    924929 8yn2:R (2.66) BS05 CLR N/A GO:0004930 ... P35367 39333117
    924930 8yn3:R (2.56) BS01 HSM N/A GO:0001696 ... P25021 39333117
    924931 8yn3:R (2.56) BS02 CLR N/A GO:0001696 ... P25021 39333117
    924932 8yn4:R (2.97) BS01 HSM N/A GO:0001696 ... P25021 39333117
    924933 8yn4:R (2.97) BS02 CLR N/A GO:0001696 ... P25021 39333117
    924934 8yn5:R (2.7) BS01 HSM N/A GO:0004930 ... Q9Y5N1 39333117
    924935 8yn5:R (2.7) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924936 8yn5:R (2.7) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924937 8yn5:R (2.7) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924938 8yn5:R (2.7) BS05 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924939 8yn5:R (2.7) BS06 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924940 8yn6:R (2.77) BS01 ITF N/A GO:0004930 ... Q9Y5N1 39333117
    924941 8yn6:R (2.77) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924942 8yn6:R (2.77) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924943 8yn6:R (2.77) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924944 8yn6:R (2.77) BS05 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924945 8yn6:R (2.77) BS06 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924946 8yn7:R (2.77) BS01 A1LY2 N/A GO:0004930 ... Q9Y5N1 39333117
    924947 8yn7:R (2.77) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924948 8yn7:R (2.77) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924949 8yn7:R (2.77) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924950 8yn7:R (2.77) BS05 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924951 8yn8:R (2.77) BS01 A1LY3 N/A GO:0004930 ... Q9Y5N1 39333117
    924952 8yn8:R (2.77) BS02 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924953 8yn8:R (2.77) BS03 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924954 8yn8:R (2.77) BS04 CLR N/A GO:0004930 ... Q9Y5N1 39333117
    924955 8yn9:R (2.3) BS01 HSM N/A GO:0004930 ... Q9H3N8 39333117
    924956 8yn9:R (2.3) BS02 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924957 8yn9:R (2.3) BS03 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924958 8yn9:R (2.3) BS04 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924959 8yn9:R (2.3) BS05 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924960 8yn9:R (2.3) BS06 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924961 8yn9:R (2.3) BS07 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924962 8yn9:R (2.3) BS08 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924963 8yna:R (2.63) BS01 A1LY4 N/A GO:0004930 ... Q9H3N8 39333117
    924964 8yna:R (2.63) BS02 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924965 8yna:R (2.63) BS03 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924966 8yna:R (2.63) BS04 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924967 8yna:R (2.63) BS05 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924968 8yna:R (2.63) BS06 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924969 8yna:R (2.63) BS07 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924970 8yna:R (2.63) BS08 CLR N/A GO:0004930 ... Q9H3N8 39333117
    924971 8yng:A (1.82) BS01 A1D6S N/A GO:0000082 ... P24941 N/A
    924972 8ynq:A (2.45) BS01 ADP N/A GO:0000166 ... A0ACD6BA05 N/A
    924973 8ynq:C (2.45) BS01 ANP N/A GO:0000166 ... A0ACD6BA05 N/A
    924974 8ynq:C (2.45) BS02 ANP N/A GO:0000166 ... A0ACD6BA05 N/A
    924975 8ynq:D (2.45) BS01 AMP N/A GO:0000166 ... A0ACD6BA05 N/A
    924976 8ynr:A (1.8) BS01 GNP N/A GO:0003924 ... Q9ULC3 39615683
    924977 8ynr:A (1.8) BS02 MG N/A GO:0003924 ... Q9ULC3 39615683
    924978 8yns:R (3.33) BS01 A1D6T N/A GO:0004930 ... A0A2R9AFP0
    P0ABE7
    Q99705
    39616153
    924979 8ynt:R (3.43) BS01 A1D6T N/A GO:0004930 ... A0A2R9AFP0
    P0ABE7
    39616153
    924980 8yny:A (4.52) BS01 dna N/A GO:0000786 ... P68431 39737984
    924981 8yny:A (4.52) BS02 dna N/A GO:0000786 ... P68431 39737984
    924982 8yny:B (4.52) BS01 dna N/A GO:0000781 ... P62805 39737984
    924983 8yny:B (4.52) BS02 dna N/A GO:0000781 ... P62805 39737984
    924984 8yny:C (4.52) BS01 dna N/A GO:0000786 ... P04908 39737984
    924985 8yny:C (4.52) BS02 dna N/A GO:0000786 ... P04908 39737984
    924986 8yny:D (4.52) BS01 dna N/A GO:0000786 ... P06899 39737984
    924987 8yny:E (4.52) BS01 dna N/A GO:0000786 ... P68431 39737984
    924988 8yny:E (4.52) BS02 dna N/A GO:0000786 ... P68431 39737984
    924989 8yny:F (4.52) BS01 dna N/A GO:0000781 ... P62805 39737984
    924990 8yny:F (4.52) BS02 dna N/A GO:0000781 ... P62805 39737984
    924991 8yny:G (4.52) BS01 dna N/A GO:0000786 ... P04908 39737984
    924992 8yny:G (4.52) BS02 dna N/A GO:0000786 ... P04908 39737984
    924993 8yny:H (4.52) BS01 dna N/A GO:0000786 ... P06899 39737984
    924994 8yny:H (4.52) BS02 dna N/A GO:0000786 ... P06899 39737984
    924995 8yny:X (4.52) BS01 dna N/A GO:0003676 ... Q99ZW2 39737984
    924996 8yny:X (4.52) BS02 dna N/A GO:0003676 ... Q99ZW2 39737984
    924997 8yny:X (4.52) BS03 dna N/A GO:0003676 ... Q99ZW2 39737984
    924998 8yny:X (4.52) BS04 rna N/A GO:0003676 ... Q99ZW2 39737984
    924999 8ynz:A (3.41) BS01 A1AQR N/A GO:0005886 ... P9WJY5 39441632
    925000 8ynz:B (3.41) BS01 A1AQR N/A GO:0005886 ... P9WJY5 39441632

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).