SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    925201 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    925202 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    925203 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    925204 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    925205 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    925206 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    925207 8yop:Lj (2.2) BS01 rna N/A GO:0000448 ... P61927 38942792
    925208 8yop:Lj (2.2) BS02 rna N/A GO:0000448 ... P61927 38942792
    925209 8yop:Lj (2.2) BS03 ZN N/A GO:0000448 ... P61927 38942792
    925210 8yop:Lk (2.2) BS01 rna N/A GO:0002181 ... P63173 38942792
    925211 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    925212 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    925213 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    925214 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    925215 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    925216 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    925217 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    925218 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    925219 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    925220 8yop:Ls (2.2) BS01 rna N/A GO:0002181 ... P05388 38942792
    925221 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    925222 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    925223 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    925224 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    925225 8yop:SD (2.2) BS01 rna N/A GO:0001228 ... P23396 38942792
    925226 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    925227 8yop:SF (2.2) BS01 rna N/A GO:0002181 ... P46782 38942792
    925228 8yop:SG (2.2) BS01 rna N/A GO:0002181 ... P62753 38942792
    925229 8yop:SH (2.2) BS01 rna N/A GO:0002181 ... P62081 38942792
    925230 8yop:SI (2.2) BS01 rna N/A GO:0002181 ... P62241 38942792
    925231 8yop:SI (2.2) BS02 rna N/A GO:0002181 ... P62241 38942792
    925232 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    925233 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    925234 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    925235 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    925236 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    925237 8yop:SN (2.2) BS01 rna N/A GO:0000462 ... P62277 38942792
    925238 8yop:SN (2.2) BS02 rna N/A GO:0000462 ... P62277 38942792
    925239 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    925240 8yop:SP (2.2) BS01 rna N/A GO:0000056 ... P62841 38942792
    925241 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    925242 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    925243 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    925244 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    925245 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    925246 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    925247 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    925248 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    925249 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    925250 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    925251 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    925252 8yop:Sb (2.2) BS01 rna N/A GO:0002181 ... P42677 38942792
    925253 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    925254 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    925255 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    925256 8yop:Se (2.2) BS01 rna N/A GO:0003735 ... P62861 38942792
    925257 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    925258 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    925259 8yoq:A (1.79) BS01 6FA N/A GO:0003677 ... Q9BRQ8 39160155
    925260 8yoq:A (1.79) BS02 NDP N/A GO:0003677 ... Q9BRQ8 39160155
    925261 8you:A (1.8) BS01 SEK ? N/A A0A5C7ETD9 39191340
    925262 8you:A (1.8) BS02 CU ? N/A A0A5C7ETD9 39191340
    925263 8you:A (1.8) BS03 CU ? N/A A0A5C7ETD9 39191340
    925264 8you:A (1.8) BS04 CU ? N/A A0A5C7ETD9 39191340
    925265 8you:A (1.8) BS05 CU ? N/A A0A5C7ETD9 39191340
    925266 8you:B (1.8) BS01 CU ? N/A A0A5C7ETD9 39191340
    925267 8you:B (1.8) BS02 CU ? N/A A0A5C7ETD9 39191340
    925268 8you:B (1.8) BS03 CU ? N/A A0A5C7ETD9 39191340
    925269 8you:B (1.8) BS04 SE ? N/A A0A5C7ETD9 39191340
    925270 8yox:A (2.48) BS01 6FA N/A GO:0003677 ... Q9BRQ8 39160155
    925271 8yoz:A (1.83) BS01 ZN N/A N/A Q5SJV5 40441711
    925272 8yoz:B (1.83) BS01 ZN N/A N/A Q5SJV5 40441711
    925273 8yp0:A (1.88) BS01 GNP N/A GO:0003924 ... Q9ULC3 39615683
    925274 8yp2:A (2.91) BS01 GOL N/A GO:0016491 ... Q0GYU4 40211621
    925275 8yp2:A (2.91) BS02 NAP N/A GO:0016491 ... Q0GYU4 40211621
    925276 8yp2:B (2.91) BS01 GOL N/A GO:0016491 ... Q0GYU4 40211621
    925277 8yp2:B (2.91) BS02 NAP N/A GO:0016491 ... Q0GYU4 40211621
    925278 8yp2:C (2.91) BS01 GOL N/A GO:0016491 ... Q0GYU4 40211621
    925279 8yp2:C (2.91) BS02 NAP N/A GO:0016491 ... Q0GYU4 40211621
    925280 8yp3:A (2.12) BS01 UD1 N/A GO:0003977 ... A0A2H1VI03 39039661
    925281 8yp3:A (2.12) BS02 MG N/A GO:0003977 ... A0A2H1VI03 39039661
    925282 8yp3:B (2.12) BS01 UD1 N/A GO:0003977 ... A0A2H1VI03 39039661
    925283 8yp3:B (2.12) BS02 MG N/A GO:0003977 ... A0A2H1VI03 39039661
    925284 8yp3:C (2.12) BS01 UD1 N/A GO:0003977 ... A0A2H1VI03 39039661
    925285 8yp3:C (2.12) BS02 MG N/A GO:0003977 ... A0A2H1VI03 39039661
    925286 8yp3:D (2.12) BS01 UD1 N/A GO:0003977 ... A0A2H1VI03 39039661
    925287 8yp3:D (2.12) BS02 MG N/A GO:0003977 ... A0A2H1VI03 39039661
    925288 8yp4:A (2.35) BS01 WNT N/A GO:0000165 ... Q02750 39111728
    925289 8yp4:B (2.35) BS01 WNT N/A GO:0000165 ... Q02750 39111728
    925290 8yp5:A (2.5) BS01 1FM N/A GO:0004672 ... P45985 39111728
    925291 8yp6:A (4.7) BS01 rna N/A GO:0004239 ... P9WK19 40441414
    925292 8yp6:c (4.7) BS01 rna N/A GO:0003676 ... A0QSD7 40441414
    925293 8yp6:d (4.7) BS01 rna N/A GO:0003723 ... A0QSL7 40441414
    925294 8yp6:e (4.7) BS01 rna N/A GO:0003723 ... A0QSG6 40441414
    925295 8yp6:f (4.7) BS01 rna N/A GO:0003735 ... A0R7F9 40441414
    925296 8yp6:g (4.7) BS01 rna N/A GO:0000049 ... A0QS97 40441414
    925297 8yp6:h (4.7) BS01 rna N/A GO:0003735 ... A0QSG3 40441414
    925298 8yp6:i (4.7) BS01 rna N/A GO:0003735 ... A0QSP9 40441414
    925299 8yp6:j (4.7) BS01 rna N/A GO:0000049 ... A0QSD0 40441414
    925300 8yp6:k (4.7) BS01 rna N/A GO:0003735 ... A0QSL6 40441414
    925301 8yp6:l (4.7) BS01 rna N/A GO:0000049 ... A0QS96 40441414
    925302 8yp6:m (4.7) BS01 rna N/A GO:0000049 ... A0QSL5 40441414
    925303 8yp6:n (4.7) BS01 rna N/A GO:0003735 ... A0QSG2 40441414
    925304 8yp6:o (4.7) BS01 rna N/A GO:0003735 ... A0QVQ3 40441414
    925305 8yp6:p (4.7) BS01 rna N/A GO:0003735 ... A0QV37 40441414
    925306 8yp6:q (4.7) BS01 rna N/A GO:0003735 ... A0QSE0 40441414
    925307 8yp6:r (4.7) BS01 rna N/A GO:0003735 ... A0R549 40441414
    925308 8yp6:s (4.7) BS01 rna N/A GO:0003723 ... A0QSD5 40441414
    925309 8yp6:t (4.7) BS01 rna N/A GO:0003723 ... A0R102 40441414
    925310 8yp8:A (2.14) BS01 peptide N/A GO:0000077 ... P47811 N/A
    925311 8yp9:A (2.3) BS01 NAP N/A GO:0016491 ... A0A6P8AP13 40211621
    925312 8yp9:B (2.3) BS01 NAP N/A GO:0016491 ... A0A6P8AP13 40211621
    925313 8yp9:C (2.3) BS01 NAP N/A GO:0016491 ... A0A6P8AP13 40211621
    925314 8ypa:A (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925315 8ypa:B (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925316 8ypa:B (2.67) BS02 A1LZN N/A GO:0004176 ... Q16740 N/A
    925317 8ypa:C (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925318 8ypa:C (2.67) BS02 A1LZN N/A GO:0004176 ... Q16740 N/A
    925319 8ypa:D (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925320 8ypa:D (2.67) BS02 A1LZN N/A GO:0004176 ... Q16740 N/A
    925321 8ypa:E (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925322 8ypa:F (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925323 8ypa:F (2.67) BS02 A1LZN N/A GO:0004176 ... Q16740 N/A
    925324 8ypa:G (2.67) BS01 A1LZN N/A GO:0004176 ... Q16740 N/A
    925325 8ypa:G (2.67) BS02 A1LZN N/A GO:0004176 ... Q16740 N/A
    925326 8ypb:A (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925327 8ypb:A (2.45) BS02 BCL N/A GO:0005886 ... O82943 39858518
    925328 8ypb:A (2.45) BS03 CRT N/A GO:0005886 ... O82943 39858518
    925329 8ypb:B (2.45) BS01 BCL N/A GO:0005886 ... D3RP74 39858518
    925330 8ypb:B (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925331 8ypb:B (2.45) BS03 CA N/A GO:0005886 ... D3RP74 39858518
    925332 8ypb:B (2.45) BS04 CRT N/A GO:0005886 ... D3RP74 39858518
    925333 8ypb:B (2.45) BS05 CRT N/A GO:0005886 ... D3RP74 39858518
    925334 8ypb:B (2.45) BS06 CRT N/A GO:0005886 ... D3RP74 39858518
    925335 8ypb:C (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925336 8ypb:C (2.45) BS02 CRT N/A GO:0005886 ... O82943 39858518
    925337 8ypb:C (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925338 8ypb:D (2.45) BS01 BCL N/A GO:0005886 ... D3RP74 39858518
    925339 8ypb:D (2.45) BS02 CRT N/A GO:0005886 ... D3RP74 39858518
    925340 8ypb:D (2.45) BS03 BCL N/A GO:0005886 ... D3RP74 39858518
    925341 8ypb:D (2.45) BS04 CA N/A GO:0005886 ... D3RP74 39858518
    925342 8ypb:D (2.45) BS05 CRT N/A GO:0005886 ... D3RP74 39858518
    925343 8ypb:D (2.45) BS06 CRT N/A GO:0005886 ... D3RP74 39858518
    925344 8ypb:E (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925345 8ypb:E (2.45) BS02 CRT N/A GO:0005886 ... O82943 39858518
    925346 8ypb:E (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925347 8ypb:F (2.45) BS01 BCL N/A GO:0005886 ... D3RP74 39858518
    925348 8ypb:F (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925349 8ypb:F (2.45) BS03 CA N/A GO:0005886 ... D3RP74 39858518
    925350 8ypb:F (2.45) BS04 CRT N/A GO:0005886 ... D3RP74 39858518
    925351 8ypb:F (2.45) BS05 CRT N/A GO:0005886 ... D3RP74 39858518
    925352 8ypb:G (2.45) BS01 CRT N/A GO:0005886 ... D3RP74 39858518
    925353 8ypb:G (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925354 8ypb:G (2.45) BS03 CRT N/A GO:0005886 ... D3RP74 39858518
    925355 8ypb:G (2.45) BS04 BCL N/A GO:0005886 ... D3RP74 39858518
    925356 8ypb:G (2.45) BS05 CA N/A GO:0005886 ... D3RP74 39858518
    925357 8ypb:G (2.45) BS06 CRT N/A GO:0005886 ... D3RP74 39858518
    925358 8ypb:H (2.45) BS01 CRT N/A GO:0005886 ... O82943 39858518
    925359 8ypb:H (2.45) BS02 BCL N/A GO:0005886 ... O82943 39858518
    925360 8ypb:H (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925361 8ypb:I (2.45) BS01 CRT N/A GO:0005886 ... D3RP74 39858518
    925362 8ypb:I (2.45) BS02 CRT N/A GO:0005886 ... D3RP74 39858518
    925363 8ypb:I (2.45) BS03 BCL N/A GO:0005886 ... D3RP74 39858518
    925364 8ypb:I (2.45) BS04 BCL N/A GO:0005886 ... D3RP74 39858518
    925365 8ypb:I (2.45) BS05 CA N/A GO:0005886 ... D3RP74 39858518
    925366 8ypb:I (2.45) BS06 CRT N/A GO:0005886 ... D3RP74 39858518
    925367 8ypb:J (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925368 8ypb:J (2.45) BS02 CRT N/A GO:0005886 ... O82943 39858518
    925369 8ypb:J (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925370 8ypb:K (2.45) BS01 CRT N/A GO:0005886 ... D3RP74 39858518
    925371 8ypb:K (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925372 8ypb:K (2.45) BS03 CRT N/A GO:0005886 ... D3RP74 39858518
    925373 8ypb:K (2.45) BS04 BCL N/A GO:0005886 ... D3RP74 39858518
    925374 8ypb:K (2.45) BS05 CA N/A GO:0005886 ... D3RP74 39858518
    925375 8ypb:K (2.45) BS06 CRT N/A GO:0005886 ... D3RP74 39858518
    925376 8ypb:L (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925377 8ypb:L (2.45) BS02 CRT N/A GO:0005886 ... O82943 39858518
    925378 8ypb:L (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925379 8ypb:M (2.45) BS01 CRT N/A GO:0005886 ... D3RP74 39858518
    925380 8ypb:M (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925381 8ypb:M (2.45) BS03 CRT N/A GO:0005886 ... D3RP74 39858518
    925382 8ypb:M (2.45) BS04 CRT N/A GO:0005886 ... D3RP74 39858518
    925383 8ypb:M (2.45) BS05 BCL N/A GO:0005886 ... D3RP74 39858518
    925384 8ypb:M (2.45) BS06 CA N/A GO:0005886 ... D3RP74 39858518
    925385 8ypb:N (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925386 8ypb:N (2.45) BS02 CRT N/A GO:0005886 ... O82943 39858518
    925387 8ypb:N (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925388 8ypb:O (2.45) BS01 CRT N/A GO:0005886 ... D3RP74 39858518
    925389 8ypb:O (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925390 8ypb:O (2.45) BS03 CRT N/A GO:0005886 ... D3RP74 39858518
    925391 8ypb:O (2.45) BS04 BCL N/A GO:0005886 ... D3RP74 39858518
    925392 8ypb:O (2.45) BS05 CA N/A GO:0005886 ... D3RP74 39858518
    925393 8ypb:O (2.45) BS06 CRT N/A GO:0005886 ... D3RP74 39858518
    925394 8ypb:P (2.45) BS01 BCL N/A GO:0005886 ... O82943 39858518
    925395 8ypb:P (2.45) BS02 CRT N/A GO:0005886 ... O82943 39858518
    925396 8ypb:P (2.45) BS03 BCL N/A GO:0005886 ... O82943 39858518
    925397 8ypb:Q (2.45) BS01 CRT N/A GO:0005886 ... D3RP74 39858518
    925398 8ypb:Q (2.45) BS02 BCL N/A GO:0005886 ... D3RP74 39858518
    925399 8ypb:Q (2.45) BS03 CRT N/A GO:0005886 ... D3RP74 39858518
    925400 8ypb:Q (2.45) BS04 BCL N/A GO:0005886 ... D3RP74 39858518

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).