SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    925601 8ypz:B (3.0) BS04 HSX N/A GO:0000287 ... P60891 40295500
    925602 8ypz:B (3.0) BS05 PO4 N/A GO:0000287 ... P60891 40295500
    925603 8ypz:B (3.0) BS06 APC N/A GO:0000287 ... P60891 40295500
    925604 8ypz:B (3.0) BS07 GDP N/A GO:0000287 ... P60891 40295500
    925605 8ypz:C (3.0) BS01 GDP N/A GO:0000287 ... P60891 40295500
    925606 8ypz:C (3.0) BS02 APC N/A GO:0000287 ... P60891 40295500
    925607 8ypz:C (3.0) BS03 APC N/A GO:0000287 ... P60891 40295500
    925608 8ypz:C (3.0) BS04 HSX N/A GO:0000287 ... P60891 40295500
    925609 8ypz:C (3.0) BS05 GDP N/A GO:0000287 ... P60891 40295500
    925610 8ypz:C (3.0) BS06 GDP N/A GO:0000287 ... P60891 40295500
    925611 8ypz:C (3.0) BS07 PO4 N/A GO:0000287 ... P60891 40295500
    925612 8ypz:D (3.0) BS01 GDP N/A GO:0000287 ... P60891 40295500
    925613 8ypz:D (3.0) BS02 GDP N/A GO:0000287 ... P60891 40295500
    925614 8ypz:D (3.0) BS03 APC N/A GO:0000287 ... P60891 40295500
    925615 8ypz:D (3.0) BS04 PO4 N/A GO:0000287 ... P60891 40295500
    925616 8ypz:D (3.0) BS05 PO4 N/A GO:0000287 ... P60891 40295500
    925617 8ypz:D (3.0) BS06 APC N/A GO:0000287 ... P60891 40295500
    925618 8ypz:E (3.0) BS01 APC N/A GO:0000287 ... P60891 40295500
    925619 8ypz:E (3.0) BS02 PO4 N/A GO:0000287 ... P60891 40295500
    925620 8ypz:E (3.0) BS03 APC N/A GO:0000287 ... P60891 40295500
    925621 8ypz:E (3.0) BS04 HSX N/A GO:0000287 ... P60891 40295500
    925622 8ypz:E (3.0) BS05 GDP N/A GO:0000287 ... P60891 40295500
    925623 8ypz:E (3.0) BS06 GDP N/A GO:0000287 ... P60891 40295500
    925624 8ypz:F (3.0) BS01 APC N/A GO:0000287 ... P60891 40295500
    925625 8ypz:F (3.0) BS02 APC N/A GO:0000287 ... P60891 40295500
    925626 8ypz:F (3.0) BS03 GDP N/A GO:0000287 ... P60891 40295500
    925627 8ypz:F (3.0) BS04 GDP N/A GO:0000287 ... P60891 40295500
    925628 8ypz:F (3.0) BS05 HSX N/A GO:0000287 ... P60891 40295500
    925629 8ypz:F (3.0) BS06 PO4 N/A GO:0000287 ... P60891 40295500
    925630 8yq0:B (3.1) BS01 HSX N/A GO:0000287 ... P60891 40295500
    925631 8yq0:F (3.1) BS01 HSX N/A GO:0000287 ... P60891 40295500
    925632 8yq0:O (3.1) BS01 HSX N/A GO:0000287 ... P60891 40295500
    925633 8yq3:A (2.52) BS01 FAD N/A GO:0004499 ... N/A N/A
    925634 8yq3:A (2.52) BS02 NAI N/A GO:0004499 ... N/A N/A
    925635 8yq8:A (2.1) BS01 A1LZS N/A GO:0004146 ... D9N170 39026651
    925636 8yq8:A (2.1) BS02 NDP N/A GO:0004146 ... D9N170 39026651
    925637 8yq8:A (2.1) BS03 UMP N/A GO:0004146 ... D9N170 39026651
    925638 8yq8:A (2.1) BS04 UMP N/A GO:0004146 ... D9N170 39026651
    925639 8yq8:B (2.1) BS01 UMP N/A GO:0004146 ... D9N170 39026651
    925640 8yq8:B (2.1) BS02 A1LZS N/A GO:0004146 ... D9N170 39026651
    925641 8yq8:B (2.1) BS03 NDP N/A GO:0004146 ... D9N170 39026651
    925642 8yq8:B (2.1) BS04 UMP N/A GO:0004146 ... D9N170 39026651
    925643 8yq9:A (2.4) BS01 NDP N/A GO:0004146 ... D9N170 39026651
    925644 8yq9:A (2.4) BS02 A1LZT N/A GO:0004146 ... D9N170 39026651
    925645 8yq9:A (2.4) BS03 UMP N/A GO:0004146 ... D9N170 39026651
    925646 8yq9:A (2.4) BS04 UMP N/A GO:0004146 ... D9N170 39026651
    925647 8yq9:B (2.4) BS01 UMP N/A GO:0004146 ... D9N170 39026651
    925648 8yq9:B (2.4) BS02 NDP N/A GO:0004146 ... D9N170 39026651
    925649 8yq9:B (2.4) BS03 A1LZT N/A GO:0004146 ... D9N170 39026651
    925650 8yq9:B (2.4) BS04 UMP N/A GO:0004146 ... D9N170 39026651
    925651 8yqd:A (1.69) BS01 3MI N/A GO:0001523 ... P02766 39096004
    925652 8yqd:B (1.69) BS01 3MI N/A GO:0001523 ... P02766 39096004
    925653 8yqe:A (1.94) BS01 A1D60 N/A GO:0000082 ... P24941 40827837
    925654 8yqg:A (1.77) BS01 MG N/A N/A A0A5B9DBT7 N/A
    925655 8yqg:B (1.77) BS01 MG N/A N/A A0A5B9DBT7 N/A
    925656 8yqm:A (1.67) BS01 FAD N/A GO:0004499 ... N/A N/A
    925657 8yqm:A (1.67) BS02 NDP N/A GO:0004499 ... N/A N/A
    925658 8yqn:A (2.27) BS01 MAN N/A GO:0004888 ... P02710 N/A
    925659 8yqo:A (3.52) BS01 HEM N/A GO:0004497 ... Q16850 N/A
    925660 8yqo:A (3.52) BS02 A1D61 N/A GO:0004497 ... Q16850 N/A
    925661 8yqp:A (1.76) BS01 A1D6Y N/A GO:0016787 ... A0AAD3RSW3 39013318
    925662 8yqt:A (2.56) BS01 MG N/A GO:0000428 ... P42486 39567541
    925663 8yqt:A (2.56) BS02 ZN N/A GO:0000428 ... P42486 39567541
    925664 8yqt:B (2.56) BS01 ZN N/A GO:0000428 ... P42487 39567541
    925665 8yqt:G (2.56) BS01 ZN N/A N/A Q65157 39567541
    925666 8yqt:H (2.56) BS01 ZN N/A GO:0000428 ... P42488 39567541
    925667 8yqt:J (2.56) BS01 ZN N/A GO:0030430 ... Q65152 39567541
    925668 8yqt:J (2.56) BS02 ZN N/A GO:0030430 ... Q65152 39567541
    925669 8yqu:A (2.85) BS01 MG N/A GO:0000428 ... P42486 39567541
    925670 8yqu:A (2.85) BS02 ZN N/A GO:0000428 ... P42486 39567541
    925671 8yqu:A (2.85) BS03 ZN N/A GO:0000428 ... P42486 39567541
    925672 8yqu:B (2.85) BS01 ZN N/A GO:0000428 ... P42487 39567541
    925673 8yqu:G (2.85) BS01 ZN N/A N/A Q65157 39567541
    925674 8yqu:G (2.85) BS02 ZN N/A N/A Q65157 39567541
    925675 8yqu:H (2.85) BS01 ZN N/A GO:0000428 ... P42488 39567541
    925676 8yqu:J (2.85) BS01 ZN N/A GO:0030430 ... Q65152 39567541
    925677 8yqu:J (2.85) BS02 ZN N/A GO:0030430 ... Q65152 39567541
    925678 8yqu:J (2.85) BS03 ZN N/A GO:0030430 ... Q65152 39567541
    925679 8yqv:A (2.67) BS01 MG N/A GO:0000428 ... P42486 39567541
    925680 8yqv:A (2.67) BS02 ZN N/A GO:0000428 ... P42486 39567541
    925681 8yqv:B (2.67) BS01 ZN N/A GO:0000428 ... P42487 39567541
    925682 8yqv:G (2.67) BS01 ZN N/A N/A Q65157 39567541
    925683 8yqv:H (2.67) BS01 ZN N/A GO:0000428 ... P42488 39567541
    925684 8yqw:A (2.68) BS01 MG N/A GO:0000428 ... P42486 39567541
    925685 8yqw:A (2.68) BS02 ZN N/A GO:0000428 ... P42486 39567541
    925686 8yqw:A (2.68) BS03 ZN N/A GO:0000428 ... P42486 39567541
    925687 8yqw:B (2.68) BS01 ZN N/A GO:0000428 ... P42487 39567541
    925688 8yqw:G (2.68) BS01 ZN N/A N/A Q65157 39567541
    925689 8yqw:G (2.68) BS02 ZN N/A N/A Q65157 39567541
    925690 8yqw:H (2.68) BS01 ZN N/A GO:0000428 ... P42488 39567541
    925691 8yqw:J (2.68) BS01 ZN N/A GO:0030430 ... Q65152 39567541
    925692 8yqw:J (2.68) BS02 ZN N/A GO:0030430 ... Q65152 39567541
    925693 8yqy:A (3.68) BS01 MG N/A GO:0000428 ... P42486 39567541
    925694 8yqy:A (3.68) BS02 ZN N/A GO:0000428 ... P42486 39567541
    925695 8yqy:A (3.68) BS03 ZN N/A GO:0000428 ... P42486 39567541
    925696 8yqy:B (3.68) BS01 ZN N/A GO:0000428 ... P42487 39567541
    925697 8yqy:G (3.68) BS01 ZN N/A N/A Q65157 39567541
    925698 8yqy:G (3.68) BS02 ZN N/A N/A Q65157 39567541
    925699 8yqy:H (3.68) BS01 ZN N/A GO:0000428 ... P42488 39567541
    925700 8yqy:J (3.68) BS01 ZN N/A GO:0030430 ... Q65152 39567541
    925701 8yqy:J (3.68) BS02 ZN N/A GO:0030430 ... Q65152 39567541
    925702 8yqy:J (3.68) BS03 ZN N/A GO:0030430 ... Q65152 39567541
    925703 8yqz:A (2.78) BS01 MG N/A GO:0000428 ... P42486 39567541
    925704 8yqz:A (2.78) BS02 ZN N/A GO:0000428 ... P42486 39567541
    925705 8yqz:B (2.78) BS01 dna N/A GO:0000428 ... P42487 39567541
    925706 8yqz:B (2.78) BS02 ZN N/A GO:0000428 ... P42487 39567541
    925707 8yqz:G (2.78) BS01 ZN N/A N/A Q65157 39567541
    925708 8yqz:H (2.78) BS01 ZN N/A GO:0000428 ... P42488 39567541
    925709 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    925710 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    925711 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    925712 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    925713 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    925714 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    925715 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    925716 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    925717 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    925718 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    925719 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    925720 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    925721 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    925722 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    925723 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    925724 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    925725 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    925726 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    925727 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    925728 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    925729 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    925730 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    925731 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    925732 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    925733 8yr3:A (3.2) BS01 GSH N/A GO:0005524 ... Q9NP58 38822018
    925734 8yr3:B (3.2) BS01 GSH N/A GO:0005524 ... Q9NP58 38822018
    925735 8yr4:A (3.1) BS01 FGA N/A GO:0005524 ... Q9NP58 38822018
    925736 8yr4:B (3.1) BS01 FGA N/A GO:0005524 ... Q9NP58 38822018
    925737 8yr6:A (2.44) BS01 A1LZV N/A GO:0003824 ... P23830 39693441
    925738 8yr9:A (3.18) BS01 Y01 N/A GO:0005452 ... P40879 N/A
    925739 8yr9:A (3.18) BS02 Y01 N/A GO:0005452 ... P40879 N/A
    925740 8yr9:A (3.18) BS03 CLR N/A GO:0005452 ... P40879 N/A
    925741 8yr9:B (3.18) BS01 Y01 N/A GO:0005452 ... P40879 N/A
    925742 8yr9:B (3.18) BS02 Y01 N/A GO:0005452 ... P40879 N/A
    925743 8yr9:B (3.18) BS03 CLR N/A GO:0005452 ... P40879 N/A
    925744 8yra:A (3.78) BS01 Y01 N/A GO:0005452 ... P40879 N/A
    925745 8yra:A (3.78) BS02 Y01 N/A GO:0005452 ... P40879 N/A
    925746 8yra:A (3.78) BS03 Y01 N/A GO:0005452 ... P40879 N/A
    925747 8yra:A (3.78) BS04 A1LZR N/A GO:0005452 ... P40879 N/A
    925748 8yra:B (3.78) BS01 Y01 N/A GO:0005452 ... P40879 N/A
    925749 8yra:B (3.78) BS02 Y01 N/A GO:0005452 ... P40879 N/A
    925750 8yra:B (3.78) BS03 Y01 N/A GO:0005452 ... P40879 N/A
    925751 8yra:B (3.78) BS04 Y01 N/A GO:0005452 ... P40879 N/A
    925752 8yra:B (3.78) BS05 A1LZR N/A GO:0005452 ... P40879 N/A
    925753 8yrb:A (1.78) BS01 FAD N/A GO:0004499 ... N/A N/A
    925754 8yrb:A (1.78) BS02 NDP N/A GO:0004499 ... N/A N/A
    925755 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    925756 8yrd:A (2.64) BS01 FE N/A GO:0016491 ... Q27RN7 N/A
    925757 8yrd:A (2.64) BS02 FE N/A GO:0016491 ... Q27RN7 N/A
    925758 8yrd:D (2.64) BS01 FE N/A GO:0016491 ... Q27RN7 N/A
    925759 8yrd:D (2.64) BS02 FE N/A GO:0016491 ... Q27RN7 N/A
    925760 8yrg:R (3.14) BS01 A1LZU ? GO:0004888 ... P0ABE7
    Q96LA9
    38718132
    925761 8yrh:A (1.841) BS01 ROA N/A GO:0008233 ... P0DTD1 38865813
    925762 8yrk:A (2.74) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    925763 8yrk:A (2.74) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    925764 8yrk:B (2.74) BS01 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    925765 8yrk:B (2.74) BS02 A1D62 N/A GO:0003924 ... A0A287AGU7 N/A
    925766 8yrk:C (2.74) BS01 GTP N/A GO:0000226 ... Q2XVP4 N/A
    925767 8yrk:C (2.74) BS02 CA N/A GO:0000226 ... Q2XVP4 N/A
    925768 8yrk:D (2.74) BS01 GDP N/A GO:0003924 ... A0A287AGU7 N/A
    925769 8yrk:D (2.74) BS02 A1D62 N/A GO:0003924 ... A0A287AGU7 N/A
    925770 8yrk:F (2.74) BS01 ACP N/A GO:0000226 ... A0A8V0Z8P0 N/A
    925771 8yrl:A (2.37) BS01 MN N/A N/A B0YDN6 39507050
    925772 8yrl:A (2.37) BS02 UDP N/A N/A B0YDN6 39507050
    925773 8yrl:A (2.37) BS03 GZL N/A N/A B0YDN6 39507050
    925774 8yrl:B (2.37) BS01 UDP N/A N/A B0YDN6 39507050
    925775 8yrl:B (2.37) BS02 MN N/A N/A B0YDN6 39507050
    925776 8yrl:B (2.37) BS03 GZL N/A N/A B0YDN6 39507050
    925777 8yrm:A (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925778 8yrm:A (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925779 8yrm:B (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925780 8yrm:B (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925781 8yrm:C (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925782 8yrm:C (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925783 8yrm:D (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925784 8yrm:D (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925785 8yrm:E (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925786 8yrm:E (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925787 8yrm:F (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925788 8yrm:F (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925789 8yrm:G (2.36) BS01 CA N/A GO:0005576 ... Q46221 40715636
    925790 8yrm:G (2.36) BS02 CA N/A GO:0005576 ... Q46221 40715636
    925791 8yrs:A (2.43) BS01 dna N/A GO:0003676 ... P46063 40512545
    925792 8yrs:A (2.43) BS02 dna N/A GO:0003676 ... P46063 40512545
    925793 8yrs:A (2.43) BS03 ZN N/A GO:0003676 ... P46063 40512545
    925794 8yrs:B (2.43) BS01 dna N/A GO:0003676 ... P46063 40512545
    925795 8yrs:B (2.43) BS02 dna N/A GO:0003676 ... P46063 40512545
    925796 8yrs:B (2.43) BS03 ZN N/A GO:0003676 ... P46063 40512545
    925797 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 39406293
    925798 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 39406293
    925799 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 39539521
    925800 8ys2:M (5.2) BS01 CA N/A N/A P98155 39127734

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).