SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    925801 8ys2:M (5.2) BS02 CA N/A N/A P98155 39127734
    925802 8ys2:N (5.2) BS01 CA N/A N/A P98155 39127734
    925803 8ys2:N (5.2) BS02 CA N/A N/A P98155 39127734
    925804 8ys2:O (5.2) BS01 CA N/A N/A P98155 39127734
    925805 8ys2:O (5.2) BS02 CA N/A N/A P98155 39127734
    925806 8ys2:P (5.2) BS01 CA N/A N/A P98155 39127734
    925807 8ys2:P (5.2) BS02 CA N/A N/A P98155 39127734
    925808 8ys4:M (4.8) BS01 CA N/A N/A P98155 39127734
    925809 8ys4:N (4.8) BS01 CA N/A N/A P98155 39127734
    925810 8ys4:O (4.8) BS01 CA N/A N/A P98155 39127734
    925811 8ys4:P (4.8) BS01 CA N/A N/A P98155 39127734
    925812 8ys4:Q (4.8) BS01 CA N/A N/A P98155 39127734
    925813 8ys4:R (4.8) BS01 CA N/A N/A P98155 39127734
    925814 8ys4:S (4.8) BS01 CA N/A N/A P98155 39127734
    925815 8ys4:T (4.8) BS01 CA N/A N/A P98155 39127734
    925816 8ys5:A (2.95) BS01 TPP N/A GO:0016491 ... N/A 40730563
    925817 8ys5:C (2.95) BS01 SF4 N/A GO:0003824 ... A0A024BZG2 40730563
    925818 8ys5:C (2.95) BS02 MG N/A GO:0003824 ... A0A024BZG2 40730563
    925819 8ys5:C (2.95) BS03 TPP N/A GO:0003824 ... A0A024BZG2 40730563
    925820 8ys5:D (2.95) BS01 SF4 N/A N/A N/A 40730563
    925821 8ys5:D (2.95) BS02 SF4 N/A N/A N/A 40730563
    925822 8ys5:F (2.95) BS01 SF4 N/A N/A N/A 40730563
    925823 8ys5:F (2.95) BS02 SF4 N/A N/A N/A 40730563
    925824 8ys5:H (2.95) BS01 SF4 N/A GO:0003824 ... A0A024BZG2 40730563
    925825 8ys5:H (2.95) BS02 MG N/A GO:0003824 ... A0A024BZG2 40730563
    925826 8ys5:H (2.95) BS03 TPP N/A GO:0003824 ... A0A024BZG2 40730563
    925827 8ys6:C (3.03) BS01 SF4 N/A GO:0003824 ... A0A024BZG2 40730563
    925828 8ys6:C (3.03) BS02 MG N/A GO:0003824 ... A0A024BZG2 40730563
    925829 8ys6:C (3.03) BS03 TPP N/A GO:0003824 ... A0A024BZG2 40730563
    925830 8ys6:D (3.03) BS01 SF4 N/A N/A N/A 40730563
    925831 8ys6:D (3.03) BS02 SF4 N/A N/A N/A 40730563
    925832 8ys6:D (3.03) BS03 A1D65 N/A N/A N/A 40730563
    925833 8ys6:F (3.03) BS01 SF4 N/A N/A N/A 40730563
    925834 8ys6:F (3.03) BS02 SF4 N/A N/A N/A 40730563
    925835 8ys6:F (3.03) BS03 A1D65 N/A N/A N/A 40730563
    925836 8ys6:H (3.03) BS01 SF4 N/A GO:0003824 ... A0A024BZG2 40730563
    925837 8ys6:H (3.03) BS02 MG N/A GO:0003824 ... A0A024BZG2 40730563
    925838 8ys6:H (3.03) BS03 TPP N/A GO:0003824 ... A0A024BZG2 40730563
    925839 8ys8:A (3.79) BS01 I2U N/A GO:0005452 ... P40879 N/A
    925840 8ys8:A (3.79) BS02 Y01 N/A GO:0005452 ... P40879 N/A
    925841 8ys8:A (3.79) BS03 Y01 N/A GO:0005452 ... P40879 N/A
    925842 8ys8:A (3.79) BS04 Y01 N/A GO:0005452 ... P40879 N/A
    925843 8ys8:A (3.79) BS05 Y01 N/A GO:0005452 ... P40879 N/A
    925844 8ys8:B (3.79) BS01 I2U N/A GO:0005452 ... P40879 N/A
    925845 8ys8:B (3.79) BS02 Y01 N/A GO:0005452 ... P40879 N/A
    925846 8ys8:B (3.79) BS03 Y01 N/A GO:0005452 ... P40879 N/A
    925847 8ys8:B (3.79) BS04 Y01 N/A GO:0005452 ... P40879 N/A
    925848 8ys9:A (1.46) BS01 SAH N/A GO:0000773 ... S9SHS0 39356767
    925849 8ys9:A (1.46) BS02 A1L1H N/A GO:0000773 ... S9SHS0 39356767
    925850 8ys9:B (1.46) BS01 SAH N/A GO:0000773 ... S9SHS0 39356767
    925851 8ysa:A (1.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    925852 8ysc:A (2.25) BS01 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925853 8ysc:A (2.25) BS02 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925854 8ysc:A (2.25) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925855 8ysc:A (2.25) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925856 8ysd:A (1.61) BS01 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925857 8ysd:A (1.61) BS02 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925858 8ysd:A (1.61) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925859 8ysd:A (1.61) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925860 8yse:A (2.19) BS01 DTP N/A GO:0016779 ... A0A345ILN6 39761885
    925861 8yse:A (2.19) BS02 DTP N/A GO:0016779 ... A0A345ILN6 39761885
    925862 8yse:A (2.19) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925863 8yse:A (2.19) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925864 8ysg:A (2.171) BS01 GTP N/A GO:0016779 ... A0A345ILN6 39761885
    925865 8ysg:A (2.171) BS02 GTP N/A GO:0016779 ... A0A345ILN6 39761885
    925866 8ysg:A (2.171) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925867 8ysg:A (2.171) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925868 8ysi:A (1.897) BS01 UTP N/A GO:0016779 ... A0A345ILN6 39761885
    925869 8ysi:A (1.897) BS02 UTP N/A GO:0016779 ... A0A345ILN6 39761885
    925870 8ysj:A (1.903) BS01 2KH N/A GO:0016779 ... A0A345ILN6 39761885
    925871 8ysj:A (1.903) BS02 2KH N/A GO:0016779 ... A0A345ILN6 39761885
    925872 8ysk:A (1.984) BS01 UTP N/A GO:0016779 ... A0A345ILN6 39761885
    925873 8ysk:A (1.984) BS02 MN N/A GO:0016779 ... A0A345ILN6 39761885
    925874 8ysk:A (1.984) BS03 MN N/A GO:0016779 ... A0A345ILN6 39761885
    925875 8ysl:A (1.98) BS01 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925876 8ysl:A (1.98) BS02 UTP N/A GO:0016779 ... A0A345ILN6 39761885
    925877 8ysl:A (1.98) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925878 8ysl:A (1.98) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925879 8ysm:A (1.5) BS01 CTP N/A GO:0016779 ... A0A345ILN6 39761885
    925880 8ysm:A (1.5) BS02 MN N/A GO:0016779 ... A0A345ILN6 39761885
    925881 8ysm:A (1.5) BS03 MN N/A GO:0016779 ... A0A345ILN6 39761885
    925882 8yso:A (1.68) BS01 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925883 8yso:A (1.68) BS02 ATP N/A GO:0016779 ... A0A345ILN6 39761885
    925884 8yso:A (1.68) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925885 8yso:A (1.68) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925886 8ysr:A (2.04) BS01 TEW N/A GO:0016779 ... A0A345ILN6 39761885
    925887 8yst:B (1.9) BS01 A1D7D N/A GO:0006633 ... K7SIG4 39302095
    925888 8ysu:A (1.944) BS01 CTP N/A GO:0016779 ... A0A345ILN6 39761885
    925889 8ysu:A (1.944) BS02 CTP N/A GO:0016779 ... A0A345ILN6 39761885
    925890 8ysu:A (1.944) BS03 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925891 8ysu:A (1.944) BS04 MG N/A GO:0016779 ... A0A345ILN6 39761885
    925892 8ysw:A (2.61) BS01 NAD N/A GO:0004352 ... A0A3N9UCW8 N/A
    925893 8ysw:B (2.61) BS01 NAD N/A GO:0004352 ... A0A3N9UCW8 N/A
    925894 8ysw:C (2.61) BS01 NAD N/A GO:0004352 ... A0A3N9UCW8 N/A
    925895 8ysw:C (2.61) BS02 NAD N/A GO:0004352 ... A0A3N9UCW8 N/A
    925896 8ysw:E (2.61) BS01 NAD N/A GO:0004352 ... A0A3N9UCW8 N/A
    925897 8ysw:F (2.61) BS01 NAD N/A GO:0004352 ... A0A3N9UCW8 N/A
    925898 8ysx:A (2.2) BS01 A1L0D N/A GO:0000502 ... Q5W412 38906067
    925899 8ysx:C (2.2) BS01 A1L0D N/A GO:0004298 ... Q5W416 38906067
    925900 8ysx:D (2.2) BS01 A1L0D N/A GO:0004298 ... Q5W416 38906067
    925901 8ysx:F (2.2) BS01 A1L0D N/A GO:0000502 ... Q5W412 38906067
    925902 8yt0:A (1.9) BS01 A1D7B N/A GO:0006633 ... K7SIG4 39302095
    925903 8yt0:B (1.9) BS01 A1D7B N/A GO:0006633 ... K7SIG4 39302095
    925904 8yt1:A (2.22) BS01 ZN N/A GO:0001760 ... Q83V25 39395800
    925905 8yt1:B (2.22) BS01 ZN N/A GO:0001760 ... Q83V25 39395800
    925906 8yt1:C (2.22) BS01 ZN N/A GO:0001760 ... Q83V25 39395800
    925907 8yt2:A (2.02) BS01 ZN N/A GO:0001760 ... Q83V25 39395800
    925908 8yt2:B (2.02) BS01 ZN N/A GO:0001760 ... Q83V25 39395800
    925909 8yt2:C (2.02) BS01 ZN N/A GO:0001760 ... Q83V25 39395800
    925910 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    925911 8yt5:A (1.6) BS02 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    925912 8yt5:A (1.6) BS03 FE 3.6.1.41 GO:0005515 ... A0A0H2URF8 38701795
    925913 8yt6:A (1.85) BS01 peptide N/A GO:0003677 ... Q07869 N/A
    925914 8yt6:A (1.85) BS02 A1LZX N/A GO:0003677 ... Q07869 N/A
    925915 8yt7:A (2.25) BS01 CA N/A GO:0016020 ... A0S6A2 38921143
    925916 8yt8:B (3.5) BS01 peptide N/A GO:0007517 ... P82349 39663450
    925917 8yt8:D (3.5) BS01 CLR N/A GO:0003015 ... P82347 39663450
    925918 8yt8:E (3.5) BS01 ZN N/A GO:0008270 ... P11531 39663450
    925919 8yt8:G (3.5) BS01 P5S N/A GO:0005515 ... P82348 39663450
    925920 8yt8:O (3.5) BS01 peptide N/A GO:0005509 ... Q62165 39663450
    925921 8yt8:O (3.5) BS02 CA N/A GO:0005509 ... Q62165 39663450
    925922 8yt8:S (3.5) BS01 CLR N/A GO:0005886 ... Q62147 39663450
    925923 8yt9:A (1.59) BS01 peptide N/A GO:0003677 ... Q07869 N/A
    925924 8yt9:A (1.59) BS02 A1LZY N/A GO:0003677 ... Q07869 N/A
    925925 8yta:A (2.50001) BS01 ZN N/A GO:0004114 ... O60658 N/A
    925926 8yta:A (2.50001) BS02 A1D66 N/A GO:0004114 ... O60658 N/A
    925927 8ytd:A (2.34) BS01 peptide N/A N/A P04629 38950284
    925928 8ytd:A (2.34) BS02 peptide N/A N/A P04629 38950284
    925929 8yte:A (2.26) BS01 peptide N/A N/A P04629 38950284
    925930 8yte:C (2.26) BS01 peptide N/A N/A P04629 38950284
    925931 8yte:C (2.26) BS02 GM1 N/A N/A P04629 38950284
    925932 8ytf:A (1.59) BS01 peptide N/A N/A Q7Z5L9 39616187
    925933 8ytf:A (1.59) BS02 ZN N/A N/A Q7Z5L9 39616187
    925934 8ytf:A (1.59) BS03 ZN N/A N/A Q7Z5L9 39616187
    925935 8ytg:A (1.45) BS01 peptide N/A N/A Q7Z5L9 39616187
    925936 8ytg:A (1.45) BS02 ZN N/A N/A Q7Z5L9 39616187
    925937 8ytg:A (1.45) BS03 ZN N/A N/A Q7Z5L9 39616187
    925938 8yth:A (2.4) BS01 peptide N/A N/A Q7Z5L9 39616187
    925939 8yth:A (2.4) BS02 ZN N/A N/A Q7Z5L9 39616187
    925940 8yth:A (2.4) BS03 ZN N/A N/A Q7Z5L9 39616187
    925941 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    925942 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    925943 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    925944 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    925945 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    925946 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    925947 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    925948 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    925949 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    925950 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    925951 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    925952 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    925953 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    925954 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    925955 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    925956 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    925957 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    925958 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    925959 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    925960 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    925961 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    925962 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    925963 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    925964 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    925965 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    925966 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    925967 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    925968 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    925969 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    925970 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    925971 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    925972 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    925973 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    925974 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    925975 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    925976 8ytk:A (2.553) BS01 W2H N/A GO:0000166 ... P07814 40253792
    925977 8ytk:B (2.553) BS01 W2H N/A GO:0000166 ... P07814 40253792
    925978 8ytl:A (2.0) BS01 peptide N/A GO:0003677 ... Q07869 N/A
    925979 8ytl:A (2.0) BS02 A1LZ0 N/A GO:0003677 ... Q07869 N/A
    925980 8yto:A (1.04) BS01 A1LZO N/A N/A N/A 38909835
    925981 8ytp:A (1.36) BS01 A1LZO N/A N/A N/A 38909835
    925982 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    925983 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    925984 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    925985 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 40812657
    925986 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 40812657
    925987 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 40669334
    925988 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 40669334
    925989 8ytt:A (2.14) BS01 FAD N/A GO:0004499 ... N/A N/A
    925990 8ytt:A (2.14) BS02 NDP N/A GO:0004499 ... N/A N/A
    925991 8ytu:A (1.34) BS01 EDO N/A GO:0052689 ... A0A1H3QT72 39745946
    925992 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    925993 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    925994 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    925995 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    925996 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    925997 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    925998 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    925999 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078
    926000 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0003924 ... A0A287AGU7 38972078

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).