SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    926001 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38972078
    926002 8ytz:A (1.7) BS01 ZN N/A N/A A0A3E0H050 39745946
    926003 8yu0:A (1.8) BS01 NDP N/A GO:0004499 ... N/A N/A
    926004 8yu0:A (1.8) BS02 FAD N/A GO:0004499 ... N/A N/A
    926005 8yu2:A (2.63) BS01 FAD N/A GO:0004499 ... N/A N/A
    926006 8yu2:A (2.63) BS02 NAD N/A GO:0004499 ... N/A N/A
    926007 8yu4:A (2.02) BS01 NAI N/A GO:0004499 ... N/A N/A
    926008 8yu4:A (2.02) BS02 FAD N/A GO:0004499 ... N/A N/A
    926009 8yu5:A (1.45) BS01 CU ? N/A A0A5C7ETD9 N/A
    926010 8yu5:A (1.45) BS02 CU ? N/A A0A5C7ETD9 N/A
    926011 8yu5:A (1.45) BS03 CU ? N/A A0A5C7ETD9 N/A
    926012 8yu5:B (1.45) BS01 CU ? N/A A0A5C7ETD9 N/A
    926013 8yu5:B (1.45) BS02 CU ? N/A A0A5C7ETD9 N/A
    926014 8yu6:A (1.55) BS01 CU ? N/A A0A5C7ETD9 N/A
    926015 8yu6:A (1.55) BS02 CU ? N/A A0A5C7ETD9 N/A
    926016 8yu6:A (1.55) BS03 CU ? N/A A0A5C7ETD9 N/A
    926017 8yu6:A (1.55) BS04 CU ? N/A A0A5C7ETD9 N/A
    926018 8yu6:B (1.55) BS01 CU ? N/A A0A5C7ETD9 N/A
    926019 8yu6:B (1.55) BS02 CU ? N/A A0A5C7ETD9 N/A
    926020 8yu6:B (1.55) BS03 CU ? N/A A0A5C7ETD9 N/A
    926021 8yu7:A (3.01) BS01 CLR N/A GO:0001618 ... P61073 39891908
    926022 8yu7:A (3.01) BS02 CLR N/A GO:0001618 ... P61073 39891908
    926023 8yu7:A (3.01) BS03 CLR N/A GO:0001618 ... P61073 39891908
    926024 8yu7:A (3.01) BS04 CLR N/A GO:0001618 ... P61073 39891908
    926025 8yu7:A (3.01) BS05 CLR N/A GO:0001618 ... P61073 39891908
    926026 8yu7:A (3.01) BS06 CLR N/A GO:0001618 ... P61073 39891908
    926027 8yu7:A (3.01) BS07 CLR N/A GO:0001618 ... P61073 39891908
    926028 8yu7:B (3.01) BS01 CLR N/A GO:0001618 ... P61073 39891908
    926029 8yu7:B (3.01) BS02 CLR N/A GO:0001618 ... P61073 39891908
    926030 8yu7:B (3.01) BS03 CLR N/A GO:0001618 ... P61073 39891908
    926031 8yu7:B (3.01) BS04 CLR N/A GO:0001618 ... P61073 39891908
    926032 8yu7:B (3.01) BS05 CLR N/A GO:0001618 ... P61073 39891908
    926033 8yu7:B (3.01) BS06 CLR N/A GO:0001618 ... P61073 39891908
    926034 8yu7:B (3.01) BS07 CLR N/A GO:0001618 ... P61073 39891908
    926035 8yu7:C (3.01) BS01 CLR N/A GO:0001618 ... P61073 39891908
    926036 8yu7:C (3.01) BS02 CLR N/A GO:0001618 ... P61073 39891908
    926037 8yu7:C (3.01) BS03 CLR N/A GO:0001618 ... P61073 39891908
    926038 8yu7:C (3.01) BS04 CLR N/A GO:0001618 ... P61073 39891908
    926039 8yu7:C (3.01) BS05 CLR N/A GO:0001618 ... P61073 39891908
    926040 8yu7:C (3.01) BS06 CLR N/A GO:0001618 ... P61073 39891908
    926041 8yu7:C (3.01) BS07 CLR N/A GO:0001618 ... P61073 39891908
    926042 8yu7:D (3.01) BS01 CLR N/A GO:0001618 ... P61073 39891908
    926043 8yu7:D (3.01) BS02 CLR N/A GO:0001618 ... P61073 39891908
    926044 8yu7:D (3.01) BS03 CLR N/A GO:0001618 ... P61073 39891908
    926045 8yu7:D (3.01) BS04 CLR N/A GO:0001618 ... P61073 39891908
    926046 8yu7:D (3.01) BS05 CLR N/A GO:0001618 ... P61073 39891908
    926047 8yu7:D (3.01) BS06 CLR N/A GO:0001618 ... P61073 39891908
    926048 8yu7:D (3.01) BS07 CLR N/A GO:0001618 ... P61073 39891908
    926049 8yu8:A (1.95) BS01 peptide N/A GO:0003677 ... Q07869 N/A
    926050 8yu8:A (1.95) BS02 A1LZ1 N/A GO:0003677 ... Q07869 N/A
    926051 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926052 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926053 8yu9:B (3.25) BS01 A1D7A ? GO:0003924 ... A0A287AGU7 38972078
    926054 8yu9:B (3.25) BS02 GDP ? GO:0003924 ... A0A287AGU7 38972078
    926055 8yu9:B (3.25) BS03 MG ? GO:0003924 ... A0A287AGU7 38972078
    926056 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926057 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926058 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926059 8yu9:D (3.25) BS01 A1D7A ? GO:0003924 ... A0A287AGU7 38972078
    926060 8yu9:D (3.25) BS02 GDP ? GO:0003924 ... A0A287AGU7 38972078
    926061 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38972078
    926062 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926063 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926064 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926065 8yua:B (2.37) BS01 GDP ? GO:0003924 ... A0A287AGU7 38972078
    926066 8yua:B (2.37) BS02 A1D69 ? GO:0003924 ... A0A287AGU7 38972078
    926067 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926068 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 38972078
    926069 8yua:D (2.37) BS01 GDP ? GO:0003924 ... A0A287AGU7 38972078
    926070 8yua:D (2.37) BS02 A1D69 ? GO:0003924 ... A0A287AGU7 38972078
    926071 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0000226 ... A0A8V0Z8P0 38972078
    926072 8yub:C (2.49) BS01 FUC N/A N/A P0DTC2 N/A
    926073 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926074 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926075 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926076 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926077 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926078 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926079 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926080 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926081 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926082 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926083 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926084 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 40124299
    926085 8yue:A (3.15) BS01 ADP N/A GO:0003777 ... P20480 N/A
    926086 8yue:B (3.15) BS01 ADP N/A GO:0003777 ... P20480 N/A
    926087 8yuf:A (1.59) BS01 MG N/A N/A N/A N/A
    926088 8yuf:B (1.59) BS01 MG N/A N/A N/A N/A
    926089 8yuh:A (1.73) BS01 AMI N/A GO:0004553 ... P11797 N/A
    926090 8yuh:A (1.73) BS02 AMI N/A GO:0004553 ... P11797 N/A
    926091 8yuh:B (1.73) BS01 AMI N/A GO:0004553 ... P11797 N/A
    926092 8yuh:B (1.73) BS02 AMI N/A GO:0004553 ... P11797 N/A
    926093 8yui:A (1.43) BS01 NGO N/A GO:0004553 ... P11797 N/A
    926094 8yui:B (1.43) BS01 NGO N/A GO:0004553 ... P11797 N/A
    926095 8yuo:0 (2.25) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    926096 8yuo:1 (2.25) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    926097 8yuo:2 (2.25) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    926098 8yuo:3 (2.25) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    926099 8yuo:4 (2.25) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    926100 8yuo:4 (2.25) BS02 rna N/A GO:0002181 ... P0A7M9 39300229
    926101 8yuo:B (2.25) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    926102 8yuo:C (2.25) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    926103 8yuo:D (2.25) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    926104 8yuo:E (2.25) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    926105 8yuo:F (2.25) BS01 rna N/A GO:0002181 ... P02358 39300229
    926106 8yuo:G (2.25) BS01 rna N/A GO:0000028 ... P02359 39300229
    926107 8yuo:H (2.25) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    926108 8yuo:I (2.25) BS01 rna N/A GO:0002181 ... P0A7X3 39300229
    926109 8yuo:I (2.25) BS02 rna N/A GO:0002181 ... P0A7X3 39300229
    926110 8yuo:J (2.25) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    926111 8yuo:K (2.25) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    926112 8yuo:L (2.25) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    926113 8yuo:L (2.25) BS02 rna N/A GO:0000049 ... P0A7S3 39300229
    926114 8yuo:M (2.25) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    926115 8yuo:M (2.25) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    926116 8yuo:N (2.25) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    926117 8yuo:O (2.25) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    926118 8yuo:O (2.25) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    926119 8yuo:P (2.25) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    926120 8yuo:Q (2.25) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    926121 8yuo:R (2.25) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    926122 8yuo:S (2.25) BS01 rna N/A GO:0002181 ... P0A7U3 39300229
    926123 8yuo:T (2.25) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    926124 8yuo:U (2.25) BS01 rna N/A GO:0000028 ... P68679 39300229
    926125 8yuo:c (2.25) BS01 rna N/A GO:0000027 ... P60422 39300229
    926126 8yuo:d (2.25) BS01 rna N/A GO:0000027 ... P60438 39300229
    926127 8yuo:e (2.25) BS01 rna N/A GO:0001070 ... P60723 39300229
    926128 8yuo:f (2.25) BS01 rna N/A GO:0000027 ... P62399 39300229
    926129 8yuo:f (2.25) BS02 rna N/A GO:0000027 ... P62399 39300229
    926130 8yuo:f (2.25) BS03 rna N/A GO:0000027 ... P62399 39300229
    926131 8yuo:g (2.25) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    926132 8yuo:h (2.25) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    926133 8yuo:i (2.25) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    926134 8yuo:j (2.25) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    926135 8yuo:j (2.25) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    926136 8yuo:k (2.25) BS01 rna N/A GO:0002181 ... P02413 39300229
    926137 8yuo:l (2.25) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    926138 8yuo:l (2.25) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    926139 8yuo:l (2.25) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    926140 8yuo:m (2.25) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    926141 8yuo:n (2.25) BS01 rna N/A GO:0002181 ... P0C018 39300229
    926142 8yuo:n (2.25) BS02 rna N/A GO:0002181 ... P0C018 39300229
    926143 8yuo:o (2.25) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    926144 8yuo:o (2.25) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    926145 8yuo:p (2.25) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    926146 8yuo:q (2.25) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    926147 8yuo:r (2.25) BS01 rna N/A GO:0002181 ... P61175 39300229
    926148 8yuo:s (2.25) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    926149 8yuo:t (2.25) BS01 rna N/A GO:0000027 ... P60624 39300229
    926150 8yuo:u (2.25) BS01 rna N/A GO:0000027 ... P68919 39300229
    926151 8yuo:v (2.25) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    926152 8yuo:v (2.25) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    926153 8yuo:w (2.25) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    926154 8yuo:x (2.25) BS01 rna N/A GO:0000027 ... P0A7M6 39300229
    926155 8yuo:y (2.25) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    926156 8yuo:z (2.25) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    926157 8yup:0 (2.39) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    926158 8yup:1 (2.39) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    926159 8yup:2 (2.39) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    926160 8yup:3 (2.39) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    926161 8yup:4 (2.39) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    926162 8yup:B (2.39) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    926163 8yup:C (2.39) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    926164 8yup:D (2.39) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    926165 8yup:E (2.39) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    926166 8yup:F (2.39) BS01 rna N/A GO:0002181 ... P02358 39300229
    926167 8yup:G (2.39) BS01 rna N/A GO:0000028 ... P02359 39300229
    926168 8yup:H (2.39) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    926169 8yup:I (2.39) BS01 rna N/A GO:0002181 ... P0A7X3 39300229
    926170 8yup:I (2.39) BS02 rna N/A GO:0002181 ... P0A7X3 39300229
    926171 8yup:J (2.39) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    926172 8yup:K (2.39) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    926173 8yup:L (2.39) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    926174 8yup:L (2.39) BS02 rna N/A GO:0000049 ... P0A7S3 39300229
    926175 8yup:M (2.39) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    926176 8yup:M (2.39) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    926177 8yup:N (2.39) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    926178 8yup:O (2.39) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    926179 8yup:O (2.39) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    926180 8yup:P (2.39) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    926181 8yup:Q (2.39) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    926182 8yup:R (2.39) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    926183 8yup:S (2.39) BS01 rna N/A GO:0002181 ... P0A7U3 39300229
    926184 8yup:T (2.39) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    926185 8yup:U (2.39) BS01 rna N/A GO:0000028 ... P68679 39300229
    926186 8yup:c (2.39) BS01 rna N/A GO:0000027 ... P60422 39300229
    926187 8yup:d (2.39) BS01 rna N/A GO:0000027 ... P60438 39300229
    926188 8yup:e (2.39) BS01 rna N/A GO:0001070 ... P60723 39300229
    926189 8yup:f (2.39) BS01 rna N/A GO:0000027 ... P62399 39300229
    926190 8yup:f (2.39) BS02 rna N/A GO:0000027 ... P62399 39300229
    926191 8yup:f (2.39) BS03 rna N/A GO:0000027 ... P62399 39300229
    926192 8yup:g (2.39) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    926193 8yup:h (2.39) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    926194 8yup:i (2.39) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    926195 8yup:j (2.39) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    926196 8yup:j (2.39) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    926197 8yup:k (2.39) BS01 rna N/A GO:0002181 ... P02413 39300229
    926198 8yup:l (2.39) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    926199 8yup:l (2.39) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    926200 8yup:l (2.39) BS03 rna N/A GO:0000027 ... P0ADY7 39300229

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).