SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    926201 8yup:m (2.39) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    926202 8yup:n (2.39) BS01 rna N/A GO:0002181 ... P0C018 39300229
    926203 8yup:n (2.39) BS02 rna N/A GO:0002181 ... P0C018 39300229
    926204 8yup:o (2.39) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    926205 8yup:o (2.39) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    926206 8yup:p (2.39) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    926207 8yup:q (2.39) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    926208 8yup:r (2.39) BS01 rna N/A GO:0002181 ... P61175 39300229
    926209 8yup:s (2.39) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    926210 8yup:t (2.39) BS01 rna N/A GO:0000027 ... P60624 39300229
    926211 8yup:u (2.39) BS01 rna N/A GO:0000027 ... P68919 39300229
    926212 8yup:v (2.39) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    926213 8yup:v (2.39) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    926214 8yup:w (2.39) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    926215 8yup:x (2.39) BS01 rna N/A GO:0000027 ... P0A7M6 39300229
    926216 8yup:y (2.39) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    926217 8yup:y (2.39) BS02 rna N/A GO:0000027 ... P0AG51 39300229
    926218 8yup:z (2.39) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    926219 8yuq:0 (2.41) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    926220 8yuq:1 (2.41) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    926221 8yuq:2 (2.41) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    926222 8yuq:3 (2.41) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    926223 8yuq:4 (2.41) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    926224 8yuq:B (2.41) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    926225 8yuq:C (2.41) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    926226 8yuq:D (2.41) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    926227 8yuq:E (2.41) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    926228 8yuq:F (2.41) BS01 rna N/A GO:0002181 ... P02358 39300229
    926229 8yuq:G (2.41) BS01 rna N/A GO:0000028 ... P02359 39300229
    926230 8yuq:H (2.41) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    926231 8yuq:I (2.41) BS01 rna N/A GO:0002181 ... P0A7X3 39300229
    926232 8yuq:I (2.41) BS02 rna N/A GO:0002181 ... P0A7X3 39300229
    926233 8yuq:J (2.41) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    926234 8yuq:K (2.41) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    926235 8yuq:L (2.41) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    926236 8yuq:M (2.41) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    926237 8yuq:M (2.41) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    926238 8yuq:N (2.41) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    926239 8yuq:O (2.41) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    926240 8yuq:O (2.41) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    926241 8yuq:P (2.41) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    926242 8yuq:Q (2.41) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    926243 8yuq:R (2.41) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    926244 8yuq:S (2.41) BS01 rna N/A GO:0002181 ... P0A7U3 39300229
    926245 8yuq:T (2.41) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    926246 8yuq:U (2.41) BS01 rna N/A GO:0000028 ... P68679 39300229
    926247 8yuq:c (2.41) BS01 rna N/A GO:0000027 ... P60422 39300229
    926248 8yuq:c (2.41) BS02 rna N/A GO:0000027 ... P60422 39300229
    926249 8yuq:d (2.41) BS01 rna N/A GO:0000027 ... P60438 39300229
    926250 8yuq:e (2.41) BS01 rna N/A GO:0001070 ... P60723 39300229
    926251 8yuq:f (2.41) BS01 rna N/A GO:0000027 ... P62399 39300229
    926252 8yuq:f (2.41) BS02 rna N/A GO:0000027 ... P62399 39300229
    926253 8yuq:f (2.41) BS03 rna N/A GO:0000027 ... P62399 39300229
    926254 8yuq:g (2.41) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    926255 8yuq:h (2.41) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    926256 8yuq:i (2.41) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    926257 8yuq:j (2.41) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    926258 8yuq:j (2.41) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    926259 8yuq:k (2.41) BS01 rna N/A GO:0002181 ... P02413 39300229
    926260 8yuq:l (2.41) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    926261 8yuq:l (2.41) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    926262 8yuq:l (2.41) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    926263 8yuq:m (2.41) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    926264 8yuq:n (2.41) BS01 rna N/A GO:0002181 ... P0C018 39300229
    926265 8yuq:n (2.41) BS02 rna N/A GO:0002181 ... P0C018 39300229
    926266 8yuq:o (2.41) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    926267 8yuq:o (2.41) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    926268 8yuq:p (2.41) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    926269 8yuq:q (2.41) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    926270 8yuq:r (2.41) BS01 rna N/A GO:0002181 ... P61175 39300229
    926271 8yuq:s (2.41) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    926272 8yuq:t (2.41) BS01 rna N/A GO:0000027 ... P60624 39300229
    926273 8yuq:u (2.41) BS01 rna N/A GO:0000027 ... P68919 39300229
    926274 8yuq:v (2.41) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    926275 8yuq:v (2.41) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    926276 8yuq:w (2.41) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    926277 8yuq:x (2.41) BS01 rna N/A GO:0000027 ... P0A7M6 39300229
    926278 8yuq:y (2.41) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    926279 8yuq:z (2.41) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    926280 8yur:0 (2.47) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    926281 8yur:1 (2.47) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    926282 8yur:2 (2.47) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    926283 8yur:3 (2.47) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    926284 8yur:4 (2.47) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    926285 8yur:B (2.47) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    926286 8yur:C (2.47) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    926287 8yur:D (2.47) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    926288 8yur:E (2.47) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    926289 8yur:F (2.47) BS01 rna N/A GO:0002181 ... P02358 39300229
    926290 8yur:G (2.47) BS01 rna N/A GO:0000028 ... P02359 39300229
    926291 8yur:G (2.47) BS02 rna N/A GO:0000028 ... P02359 39300229
    926292 8yur:H (2.47) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    926293 8yur:I (2.47) BS01 rna N/A GO:0002181 ... P0A7X3 39300229
    926294 8yur:I (2.47) BS02 rna N/A GO:0002181 ... P0A7X3 39300229
    926295 8yur:J (2.47) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    926296 8yur:K (2.47) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    926297 8yur:L (2.47) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    926298 8yur:L (2.47) BS02 rna N/A GO:0000049 ... P0A7S3 39300229
    926299 8yur:M (2.47) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    926300 8yur:M (2.47) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    926301 8yur:N (2.47) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    926302 8yur:O (2.47) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    926303 8yur:O (2.47) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    926304 8yur:P (2.47) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    926305 8yur:Q (2.47) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    926306 8yur:R (2.47) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    926307 8yur:S (2.47) BS01 rna N/A GO:0002181 ... P0A7U3 39300229
    926308 8yur:T (2.47) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    926309 8yur:U (2.47) BS01 rna N/A GO:0000028 ... P68679 39300229
    926310 8yur:c (2.47) BS01 rna N/A GO:0000027 ... P60422 39300229
    926311 8yur:d (2.47) BS01 rna N/A GO:0000027 ... P60438 39300229
    926312 8yur:e (2.47) BS01 rna N/A GO:0001070 ... P60723 39300229
    926313 8yur:f (2.47) BS01 rna N/A GO:0000027 ... P62399 39300229
    926314 8yur:f (2.47) BS02 rna N/A GO:0000027 ... P62399 39300229
    926315 8yur:f (2.47) BS03 rna N/A GO:0000027 ... P62399 39300229
    926316 8yur:g (2.47) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    926317 8yur:h (2.47) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    926318 8yur:i (2.47) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    926319 8yur:j (2.47) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    926320 8yur:j (2.47) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    926321 8yur:k (2.47) BS01 rna N/A GO:0002181 ... P02413 39300229
    926322 8yur:l (2.47) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    926323 8yur:l (2.47) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    926324 8yur:l (2.47) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    926325 8yur:m (2.47) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    926326 8yur:n (2.47) BS01 rna N/A GO:0002181 ... P0C018 39300229
    926327 8yur:n (2.47) BS02 rna N/A GO:0002181 ... P0C018 39300229
    926328 8yur:o (2.47) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    926329 8yur:o (2.47) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    926330 8yur:p (2.47) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    926331 8yur:q (2.47) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    926332 8yur:r (2.47) BS01 rna N/A GO:0002181 ... P61175 39300229
    926333 8yur:s (2.47) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    926334 8yur:t (2.47) BS01 rna N/A GO:0000027 ... P60624 39300229
    926335 8yur:u (2.47) BS01 rna N/A GO:0000027 ... P68919 39300229
    926336 8yur:v (2.47) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    926337 8yur:v (2.47) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    926338 8yur:w (2.47) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    926339 8yur:x (2.47) BS01 rna N/A GO:0000027 ... P0A7M6 39300229
    926340 8yur:y (2.47) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    926341 8yur:z (2.47) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    926342 8yus:0 (2.43) BS01 rna N/A GO:0000027 ... P0A7N9 39300229
    926343 8yus:1 (2.43) BS01 rna N/A GO:0002181 ... P0A7P5 39300229
    926344 8yus:2 (2.43) BS01 rna N/A GO:0002181 ... P0A7Q1 39300229
    926345 8yus:3 (2.43) BS01 rna N/A GO:0002181 ... P0A7Q6 39300229
    926346 8yus:4 (2.43) BS01 rna N/A GO:0002181 ... P0A7M9 39300229
    926347 8yus:B (2.43) BS01 rna N/A GO:0000028 ... P0A7V0 39300229
    926348 8yus:C (2.43) BS01 rna N/A GO:0000028 ... P0A7V3 39300229
    926349 8yus:D (2.43) BS01 rna N/A GO:0000028 ... P0A7V8 39300229
    926350 8yus:E (2.43) BS01 rna N/A GO:0000028 ... P0A7W1 39300229
    926351 8yus:F (2.43) BS01 rna N/A GO:0002181 ... P02358 39300229
    926352 8yus:G (2.43) BS01 rna N/A GO:0000028 ... P02359 39300229
    926353 8yus:H (2.43) BS01 rna N/A GO:0000028 ... P0A7W7 39300229
    926354 8yus:I (2.43) BS01 rna N/A GO:0002181 ... P0A7X3 39300229
    926355 8yus:I (2.43) BS02 rna N/A GO:0002181 ... P0A7X3 39300229
    926356 8yus:J (2.43) BS01 rna N/A GO:0000049 ... P0A7R5 39300229
    926357 8yus:K (2.43) BS01 rna N/A GO:0002181 ... P0A7R9 39300229
    926358 8yus:L (2.43) BS01 rna N/A GO:0000049 ... P0A7S3 39300229
    926359 8yus:L (2.43) BS02 rna N/A GO:0000049 ... P0A7S3 39300229
    926360 8yus:M (2.43) BS01 rna N/A GO:0000049 ... P0A7S9 39300229
    926361 8yus:M (2.43) BS02 rna N/A GO:0000049 ... P0A7S9 39300229
    926362 8yus:N (2.43) BS01 rna N/A GO:0000028 ... P0AG59 39300229
    926363 8yus:O (2.43) BS01 rna N/A GO:0000028 ... P0ADZ4 39300229
    926364 8yus:O (2.43) BS02 rna N/A GO:0000028 ... P0ADZ4 39300229
    926365 8yus:P (2.43) BS01 rna N/A GO:0000028 ... P0A7T3 39300229
    926366 8yus:Q (2.43) BS01 rna N/A GO:0000028 ... P0AG63 39300229
    926367 8yus:R (2.43) BS01 rna N/A GO:0002181 ... P0A7T7 39300229
    926368 8yus:S (2.43) BS01 rna N/A GO:0002181 ... P0A7U3 39300229
    926369 8yus:T (2.43) BS01 rna N/A GO:0000028 ... P0A7U7 39300229
    926370 8yus:U (2.43) BS01 rna N/A GO:0000028 ... P68679 39300229
    926371 8yus:c (2.43) BS01 rna N/A GO:0000027 ... P60422 39300229
    926372 8yus:d (2.43) BS01 rna N/A GO:0000027 ... P60438 39300229
    926373 8yus:e (2.43) BS01 rna N/A GO:0001070 ... P60723 39300229
    926374 8yus:f (2.43) BS01 rna N/A GO:0000027 ... P62399 39300229
    926375 8yus:f (2.43) BS02 rna N/A GO:0000027 ... P62399 39300229
    926376 8yus:f (2.43) BS03 rna N/A GO:0000027 ... P62399 39300229
    926377 8yus:g (2.43) BS01 rna N/A GO:0000027 ... P0AG55 39300229
    926378 8yus:h (2.43) BS01 rna N/A GO:0002181 ... P0A7R1 39300229
    926379 8yus:i (2.43) BS01 rna N/A GO:0002181 ... P0AA10 39300229
    926380 8yus:j (2.43) BS01 rna N/A GO:0002181 ... P0ADY3 39300229
    926381 8yus:j (2.43) BS02 rna N/A GO:0002181 ... P0ADY3 39300229
    926382 8yus:k (2.43) BS01 rna N/A GO:0002181 ... P02413 39300229
    926383 8yus:l (2.43) BS01 rna N/A GO:0000027 ... P0ADY7 39300229
    926384 8yus:l (2.43) BS02 rna N/A GO:0000027 ... P0ADY7 39300229
    926385 8yus:l (2.43) BS03 rna N/A GO:0000027 ... P0ADY7 39300229
    926386 8yus:m (2.43) BS01 rna N/A GO:0000027 ... P0AG44 39300229
    926387 8yus:n (2.43) BS01 rna N/A GO:0002181 ... P0C018 39300229
    926388 8yus:n (2.43) BS02 rna N/A GO:0002181 ... P0C018 39300229
    926389 8yus:o (2.43) BS01 rna N/A GO:0000027 ... P0A7K6 39300229
    926390 8yus:o (2.43) BS02 rna N/A GO:0000027 ... P0A7K6 39300229
    926391 8yus:p (2.43) BS01 rna N/A GO:0000027 ... P0A7L3 39300229
    926392 8yus:q (2.43) BS01 rna N/A GO:0002181 ... P0AG48 39300229
    926393 8yus:r (2.43) BS01 rna N/A GO:0002181 ... P61175 39300229
    926394 8yus:s (2.43) BS01 rna N/A GO:0000027 ... P0ADZ0 39300229
    926395 8yus:t (2.43) BS01 rna N/A GO:0000027 ... P60624 39300229
    926396 8yus:u (2.43) BS01 rna N/A GO:0000027 ... P68919 39300229
    926397 8yus:v (2.43) BS01 rna N/A GO:0000027 ... P0A7L8 39300229
    926398 8yus:v (2.43) BS02 rna N/A GO:0000027 ... P0A7L8 39300229
    926399 8yus:w (2.43) BS01 rna N/A GO:0000027 ... P0A7M2 39300229
    926400 8yus:x (2.43) BS01 rna N/A GO:0000027 ... P0A7M6 39300229

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).