SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    926401 8yus:y (2.43) BS01 rna N/A GO:0000027 ... P0AG51 39300229
    926402 8yus:z (2.43) BS01 rna N/A GO:0000027 ... P0A7N4 39300229
    926403 8yut:R (2.7) BS01 A1D67 ? GO:0001696 ... P25021 38647423
    926404 8yut:R (2.7) BS02 CLR ? GO:0001696 ... P25021 38647423
    926405 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    926406 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    926407 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    926408 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    926409 8yv5:A (1.98) BS01 ATP N/A N/A A0A0A7GDU7 N/A
    926410 8yv5:B (1.98) BS01 ATP N/A N/A A0A0A7GDU7 N/A
    926411 8yv6:A (1.75) BS01 peptide N/A GO:0000045 ... Q9GZQ8 N/A
    926412 8yv8:A (3.0) BS01 dna N/A GO:0000786 ... P68431 39178260
    926413 8yv8:A (3.0) BS02 dna N/A GO:0000786 ... P68431 39178260
    926414 8yv8:B (3.0) BS01 dna N/A GO:0000781 ... P62805 39178260
    926415 8yv8:B (3.0) BS02 dna N/A GO:0000781 ... P62805 39178260
    926416 8yv8:C (3.0) BS01 dna N/A GO:0000786 ... P04908 39178260
    926417 8yv8:C (3.0) BS02 dna N/A GO:0000786 ... P04908 39178260
    926418 8yv8:D (3.0) BS01 dna N/A GO:0000786 ... O60814 39178260
    926419 8yv8:D (3.0) BS02 dna N/A GO:0000786 ... O60814 39178260
    926420 8yv8:E (3.0) BS01 dna N/A GO:0000786 ... P68431 39178260
    926421 8yv8:E (3.0) BS02 dna N/A GO:0000786 ... P68431 39178260
    926422 8yv8:F (3.0) BS01 dna N/A GO:0000781 ... P62805 39178260
    926423 8yv8:F (3.0) BS02 dna N/A GO:0000781 ... P62805 39178260
    926424 8yv8:G (3.0) BS01 dna N/A GO:0000786 ... P04908 39178260
    926425 8yv8:G (3.0) BS02 dna N/A GO:0000786 ... P04908 39178260
    926426 8yv8:H (3.0) BS01 dna N/A GO:0000786 ... O60814 39178260
    926427 8yv8:H (3.0) BS02 dna N/A GO:0000786 ... O60814 39178260
    926428 8yv8:K (3.0) BS01 dna N/A GO:0006355 ... Q9BWT1 39178260
    926429 8yv8:K (3.0) BS02 dna N/A GO:0006355 ... Q9BWT1 39178260
    926430 8yv8:K (3.0) BS03 ZN N/A GO:0006355 ... Q9BWT1 39178260
    926431 8yv8:K (3.0) BS04 ZN N/A GO:0006355 ... Q9BWT1 39178260
    926432 8yv8:K (3.0) BS05 ZN N/A GO:0006355 ... Q9BWT1 39178260
    926433 8yv9:A (2.14) BS01 dna N/A N/A O18068 39609407
    926434 8yv9:A (2.14) BS02 dna N/A N/A O18068 39609407
    926435 8yv9:A (2.14) BS03 ZN N/A N/A O18068 39609407
    926436 8yv9:A (2.14) BS04 ZN N/A N/A O18068 39609407
    926437 8yva:A (1.8) BS01 dna N/A N/A O18067 39609407
    926438 8yva:A (1.8) BS02 dna N/A N/A O18067 39609407
    926439 8yva:A (1.8) BS03 ZN N/A N/A O18067 39609407
    926440 8yva:A (1.8) BS04 ZN N/A N/A O18067 39609407
    926441 8yva:B (1.8) BS01 dna N/A N/A O18067 39609407
    926442 8yva:B (1.8) BS02 dna N/A N/A O18067 39609407
    926443 8yva:B (1.8) BS03 dna N/A N/A O18067 39609407
    926444 8yva:B (1.8) BS04 ZN N/A N/A O18067 39609407
    926445 8yva:B (1.8) BS05 ZN N/A N/A O18067 39609407
    926446 8yvb:A (1.9) BS01 dna N/A N/A B2MZC6 39609407
    926447 8yvb:A (1.9) BS02 dna N/A N/A B2MZC6 39609407
    926448 8yvb:A (1.9) BS03 ZN N/A N/A B2MZC6 39609407
    926449 8yvb:A (1.9) BS04 ZN N/A N/A B2MZC6 39609407
    926450 8yvg:A (2.0) BS01 A1L0C N/A GO:0000502 ... Q5W412 38906067
    926451 8yvg:C (2.0) BS01 A1L0C N/A GO:0004298 ... Q5W416 38906067
    926452 8yvg:D (2.0) BS01 A1L0C N/A GO:0004298 ... Q5W416 38906067
    926453 8yvg:F (2.0) BS01 A1L0C N/A GO:0000502 ... Q5W412 38906067
    926454 8yvh:A (2.1) BS01 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    926455 8yvh:B (2.1) BS01 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    926456 8yvi:E (2.93) BS01 peptide N/A GO:0031469 ... P45689 39612341
    926457 8yvi:K (2.93) BS01 peptide N/A GO:0031469 ... P45689 39612341
    926458 8yvk:A (3.09) BS01 CA N/A GO:0004308 ... A0A248T7C3 N/A
    926459 8yvk:B (3.09) BS01 CA N/A GO:0004308 ... A0A248T7C3 N/A
    926460 8yvk:C (3.09) BS01 CA N/A GO:0004308 ... A0A248T7C3 N/A
    926461 8yvk:D (3.09) BS01 CA N/A GO:0004308 ... A0A248T7C3 N/A
    926462 8yvl:A (2.47) BS01 CA N/A GO:0004308 ... P50552 N/A
    926463 8yvl:A (2.47) BS02 CA N/A GO:0004308 ... P50552 N/A
    926464 8yvl:B (2.47) BS01 CA N/A GO:0004308 ... P50552 N/A
    926465 8yvl:B (2.47) BS02 CA N/A GO:0004308 ... P50552 N/A
    926466 8yvl:C (2.47) BS01 CA N/A GO:0004308 ... P50552 N/A
    926467 8yvl:C (2.47) BS02 CA N/A GO:0004308 ... P50552 N/A
    926468 8yvl:D (2.47) BS01 CA N/A GO:0004308 ... P50552 N/A
    926469 8yvl:D (2.47) BS02 CA N/A GO:0004308 ... P50552 N/A
    926470 8yvm:A (3.02) BS01 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926471 8yvm:B (3.02) BS01 MAN N/A GO:0004308 ... A0A0N7G9M6 N/A
    926472 8yvm:B (3.02) BS02 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926473 8yvm:C (3.02) BS01 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926474 8yvm:D (3.02) BS01 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926475 8yvn:A (2.8) BS01 MAN N/A GO:0004308 ... A0A0N7G9M6 N/A
    926476 8yvn:A (2.8) BS02 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926477 8yvn:B (2.8) BS01 MAN N/A GO:0004308 ... A0A0N7G9M6 N/A
    926478 8yvn:B (2.8) BS02 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926479 8yvn:C (2.8) BS01 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926480 8yvn:D (2.8) BS01 MAN N/A GO:0004308 ... A0A0N7G9M6 N/A
    926481 8yvn:D (2.8) BS02 CA N/A GO:0004308 ... A0A0N7G9M6 N/A
    926482 8yvp:A (2.5) BS01 A1L0D N/A GO:0004298 ... Q60692 38906067
    926483 8yvp:C (2.5) BS01 A1L0D N/A GO:0004298 ... O55234 38906067
    926484 8yvp:C (2.5) BS02 A1L0D N/A GO:0004298 ... O55234 38906067
    926485 8yvp:D (2.5) BS01 A1L0D N/A GO:0004298 ... O55234 38906067
    926486 8yvp:D (2.5) BS02 A1L0D N/A GO:0004298 ... O55234 38906067
    926487 8yvp:F (2.5) BS01 A1L0D N/A GO:0004298 ... Q60692 38906067
    926488 8yvp:M (2.5) BS01 A1L0D N/A GO:0000502 ... Q9Z2U1 38906067
    926489 8yvp:S (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    926490 8yvp:X (2.5) BS01 A1L0D N/A GO:0000502 ... O09061 38906067
    926491 8yvr:A (1.9) BS01 NOJ N/A GO:0003824 ... A5FBJ5 39533825
    926492 8yvr:B (1.9) BS01 NOJ N/A GO:0003824 ... A5FBJ5 39533825
    926493 8yvr:C (1.9) BS01 NOJ N/A GO:0003824 ... A5FBJ5 39533825
    926494 8yvs:A (1.6) BS01 CTS N/A GO:0003824 ... A5FBJ5 39533825
    926495 8yvs:A (1.6) BS02 CTS N/A GO:0003824 ... A5FBJ5 39533825
    926496 8yvs:B (1.6) BS01 CTS N/A GO:0003824 ... A5FBJ5 39533825
    926497 8yvs:B (1.6) BS02 CTS N/A GO:0003824 ... A5FBJ5 39533825
    926498 8yvs:C (1.6) BS01 CTS N/A GO:0003824 ... A5FBJ5 39533825
    926499 8yvs:C (1.6) BS02 CTS N/A GO:0003824 ... A5FBJ5 39533825
    926500 8yvu:A (3.9) BS01 peptide N/A N/A P12319 39442557
    926501 8yvu:D (3.9) BS01 peptide N/A GO:0007166 ... P30273 39442557
    926502 8yvu:E (3.9) BS01 peptide N/A N/A P12319 39442557
    926503 8yvu:E (3.9) BS02 CLR N/A N/A P12319 39442557
    926504 8yvu:F (3.9) BS01 CLR N/A GO:0016020 ... Q01362 39442557
    926505 8yvu:H (3.9) BS01 peptide N/A GO:0007166 ... P30273 39442557
    926506 8yvz:E (3.45) BS01 CA N/A N/A P98155 39705215
    926507 8yvz:R (3.45) BS01 CA N/A N/A P98155 39705215
    926508 8yvz:S (3.45) BS01 CA N/A N/A P98155 39705215
    926509 8yvz:T (3.45) BS01 CA N/A N/A P98155 39705215
    926510 8yw0:E (3.55) BS01 CA N/A N/A P98155 39705215
    926511 8yw0:R (3.55) BS01 CA N/A N/A P98155 39705215
    926512 8yw0:T (3.55) BS01 CA N/A N/A P98155 39705215
    926513 8yw4:R (3.26) BS01 peptide N/A GO:0002029 ... P48546 39019866
    926514 8yw7:A (2.0) BS01 A1D7F N/A GO:0006633 ... K7SIG4 39302095
    926515 8yw8:A (3.17) BS01 I2R N/A GO:0005515 ... Q9Y5U8 40101766
    926516 8yw8:B (3.17) BS01 I2R N/A GO:0005515 ... O95563 40101766
    926517 8ywb:A (2.49) BS01 peptide N/A GO:0000045 ... Q86WV6 N/A
    926518 8ywb:D (2.49) BS01 peptide N/A GO:0000045 ... Q86WV6 N/A
    926519 8ywd:A (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926520 8ywd:A (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926521 8ywd:B (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926522 8ywd:B (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926523 8ywd:C (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926524 8ywd:C (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926525 8ywd:D (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926526 8ywd:D (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926527 8ywd:E (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926528 8ywd:E (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926529 8ywd:F (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926530 8ywd:F (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926531 8ywd:G (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926532 8ywd:G (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926533 8ywd:H (2.65) BS01 CA N/A GO:0003824 ... Q9RST7 39109746
    926534 8ywd:H (2.65) BS02 MG N/A GO:0003824 ... Q9RST7 39109746
    926535 8ywf:P (2.74) BS01 A1D7Q N/A GO:0005179 ... N/A N/A
    926536 8ywf:R (2.74) BS01 A1D7Q N/A GO:0004888 ... P43220 N/A
    926537 8ywh:A (2.97) BS01 rna N/A GO:0003676 ... J7RUA5 38944889
    926538 8ywh:A (2.97) BS02 dna N/A GO:0003676 ... J7RUA5 38944889
    926539 8ywh:A (2.97) BS03 dna N/A GO:0003676 ... J7RUA5 38944889
    926540 8ywi:A (2.7) BS01 dna N/A GO:0000166 ... P42489 39189451
    926541 8ywi:A (2.7) BS02 dna N/A GO:0000166 ... P42489 39189451
    926542 8ywi:A (2.7) BS03 MG N/A GO:0000166 ... P42489 39189451
    926543 8ywi:A (2.7) BS04 TTP N/A GO:0000166 ... P42489 39189451
    926544 8ywm:A (3.2) BS01 dna N/A GO:0000166 ... P42489 39189451
    926545 8ywm:A (3.2) BS02 dna N/A GO:0000166 ... P42489 39189451
    926546 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0019120 ... B2Z3V8 N/A
    926547 8ywt:N (2.8) BS01 peptide N/A GO:0007035 ... Q5SIT6 39567487
    926548 8ywu:A (1.77) BS01 peptide N/A GO:0003677 ... Q07869 N/A
    926549 8ywu:A (1.77) BS02 A1LZ9 N/A GO:0003677 ... Q07869 N/A
    926550 8ywv:A (2.01) BS01 peptide N/A GO:0003677 ... Q07869 N/A
    926551 8ywv:A (2.01) BS02 A1L0A N/A GO:0003677 ... Q07869 N/A
    926552 8ywy:A (1.95) BS01 FHR N/A GO:0008233 ... P0DTC1 40133408
    926553 8ywz:B (1.91) BS01 FHR N/A GO:0008233 ... P0DTD1 40133408
    926554 8yx2:A (2.31) BS01 A1LZ5 N/A GO:0006508 ... P0DTD1 39580525
    926555 8yx2:A (2.31) BS02 ZN N/A GO:0006508 ... P0DTD1 39580525
    926556 8yx2:B (2.31) BS01 ZN N/A GO:0006508 ... P0DTD1 39580525
    926557 8yx2:B (2.31) BS02 A1LZ5 N/A GO:0006508 ... P0DTD1 39580525
    926558 8yx3:A (2.6) BS01 A1LZ7 N/A GO:0006508 ... P0DTD1 39580525
    926559 8yx3:B (2.6) BS01 A1LZ7 N/A GO:0006508 ... P0DTD1 39580525
    926560 8yx4:A (2.28) BS01 A1LZ6 N/A GO:0006508 ... P0DTD1 39580525
    926561 8yx5:A (1.74) BS01 A1LZ8 N/A GO:0006508 ... P0DTD1 39580525
    926562 8yx5:A (1.74) BS02 ZN N/A GO:0006508 ... P0DTD1 39580525
    926563 8yx5:B (1.74) BS01 A1LZ8 N/A GO:0006508 ... P0DTD1 39580525
    926564 8yx5:B (1.74) BS02 ZN N/A GO:0006508 ... P0DTD1 39580525
    926565 8yx6:A (2.9) BS01 ZN N/A GO:0004888 ... Q401N2 39774710
    926566 8yx6:A (2.9) BS02 ZN N/A GO:0004888 ... Q401N2 39774710
    926567 8yx6:B (2.9) BS01 ZN N/A GO:0004888 ... Q401N2 39774710
    926568 8yx6:B (2.9) BS02 ZN N/A GO:0004888 ... Q401N2 39774710
    926569 8yx6:C (2.9) BS01 ZN N/A GO:0004888 ... Q401N2 39774710
    926570 8yx6:C (2.9) BS02 ZN N/A GO:0004888 ... Q401N2 39774710
    926571 8yx6:D (2.9) BS01 ZN N/A GO:0004888 ... Q401N2 39774710
    926572 8yx6:D (2.9) BS02 ZN N/A GO:0004888 ... Q401N2 39774710
    926573 8yx6:E (2.9) BS01 ZN N/A GO:0004888 ... Q401N2 39774710
    926574 8yx6:E (2.9) BS02 ZN N/A GO:0004888 ... Q401N2 39774710
    926575 8yxa:A (2.5) BS01 X56 N/A GO:0003677 ... P02768 39083648
    926576 8yxa:B (2.5) BS01 X56 N/A GO:0003677 ... P02768 39083648
    926577 8yxb:A (2.2) BS01 9F2 N/A GO:0003677 ... P02768 39083648
    926578 8yxb:B (2.2) BS01 9F2 N/A GO:0003677 ... P02768 39083648
    926579 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 38760379
    926580 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 38760379
    926581 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 38760379
    926582 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0000166 ... C0JJA4 38760379
    926583 8yxq:A (1.53) BS01 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    926584 8yxq:A (1.53) BS02 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926585 8yxq:A (1.53) BS03 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926586 8yxq:A (1.53) BS04 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    926587 8yxq:A (1.53) BS05 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926588 8yxq:A (1.53) BS06 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926589 8yxq:B (1.53) BS01 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    926590 8yxq:B (1.53) BS02 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926591 8yxq:B (1.53) BS03 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926592 8yxq:B (1.53) BS04 NAP N/A GO:0000785 ... A0A179FZ20 N/A
    926593 8yxq:B (1.53) BS05 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926594 8yxq:B (1.53) BS06 A1D7O N/A GO:0000785 ... A0A179FZ20 N/A
    926595 8yxs:A (3.62) BS01 FE N/A GO:0016491 ... A0A1L9WLE0 N/A
    926596 8yxs:B (3.62) BS01 FE N/A GO:0016491 ... A0A1L9WLE0 N/A
    926597 8yxs:C (3.62) BS01 FE N/A GO:0016491 ... A0A1L9WLE0 N/A
    926598 8yxs:D (3.62) BS01 FE N/A GO:0016491 ... A0A1L9WLE0 N/A
    926599 8yxs:E (3.62) BS01 FE N/A GO:0016491 ... A0A1L9WLE0 N/A
    926600 8yxt:A (2.6) BS01 HEM N/A GO:0004497 ... A0ACD6B909 39508763

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).