SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    927201 9d0j:1E (2.5) BS01 rna N/A GO:0003735 ... Q5SHN8 N/A
    927202 9d0j:1E (2.5) BS02 MG N/A GO:0003735 ... Q5SHN8 N/A
    927203 9d0j:1E (2.5) BS03 MG N/A GO:0003735 ... Q5SHN8 N/A
    927204 9d0j:1E (2.5) BS04 MG N/A GO:0003735 ... Q5SHN8 N/A
    927205 9d0j:1E (2.5) BS05 MG N/A GO:0003735 ... Q5SHN8 N/A
    927206 9d0j:1E (2.5) BS06 MG N/A GO:0003735 ... Q5SHN8 N/A
    927207 9d0j:1F (2.5) BS01 rna N/A GO:0003735 ... Q5SHN9 N/A
    927208 9d0j:1F (2.5) BS02 MG N/A GO:0003735 ... Q5SHN9 N/A
    927209 9d0j:1F (2.5) BS03 MG N/A GO:0003735 ... Q5SHN9 N/A
    927210 9d0j:1F (2.5) BS04 MG N/A GO:0003735 ... Q5SHN9 N/A
    927211 9d0j:1F (2.5) BS05 MG N/A GO:0003735 ... Q5SHN9 N/A
    927212 9d0j:1F (2.5) BS06 MG N/A GO:0003735 ... Q5SHN9 N/A
    927213 9d0j:1F (2.5) BS07 MG N/A GO:0003735 ... Q5SHN9 N/A
    927214 9d0j:1F (2.5) BS08 MG N/A GO:0003735 ... Q5SHN9 N/A
    927215 9d0j:1F (2.5) BS09 MG N/A GO:0003735 ... Q5SHN9 N/A
    927216 9d0j:1F (2.5) BS10 MG N/A GO:0003735 ... Q5SHN9 N/A
    927217 9d0j:1G (2.5) BS01 rna N/A GO:0000049 ... Q5SHQ0 N/A
    927218 9d0j:1G (2.5) BS02 rna N/A GO:0000049 ... Q5SHQ0 N/A
    927219 9d0j:1G (2.5) BS03 MG N/A GO:0000049 ... Q5SHQ0 N/A
    927220 9d0j:1H (2.5) BS01 rna N/A GO:0002181 ... P0DOY8 N/A
    927221 9d0j:1I (2.5) BS01 rna N/A GO:0005840 ... Q5SLQ1 N/A
    927222 9d0j:1I (2.5) BS02 MG N/A GO:0005840 ... Q5SLQ1 N/A
    927223 9d0j:1N (2.5) BS01 rna N/A GO:0003729 ... P60488 N/A
    927224 9d0j:1N (2.5) BS02 MG N/A GO:0003729 ... P60488 N/A
    927225 9d0j:1N (2.5) BS03 MG N/A GO:0003729 ... P60488 N/A
    927226 9d0j:1O (2.5) BS01 rna N/A GO:0003735 ... Q5SHP8 N/A
    927227 9d0j:1O (2.5) BS02 rna N/A GO:0003735 ... Q5SHP8 N/A
    927228 9d0j:1O (2.5) BS03 MG N/A GO:0003735 ... Q5SHP8 N/A
    927229 9d0j:1O (2.5) BS04 MG N/A GO:0003735 ... Q5SHP8 N/A
    927230 9d0j:1O (2.5) BS05 MG N/A GO:0003735 ... Q5SHP8 N/A
    927231 9d0j:1P (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ7 N/A
    927232 9d0j:1P (2.5) BS02 MG N/A GO:0003735 ... Q5SHQ7 N/A
    927233 9d0j:1P (2.5) BS03 MG N/A GO:0003735 ... Q5SHQ7 N/A
    927234 9d0j:1P (2.5) BS04 MG N/A GO:0003735 ... Q5SHQ7 N/A
    927235 9d0j:1P (2.5) BS05 MG N/A GO:0003735 ... Q5SHQ7 N/A
    927236 9d0j:1Q (2.5) BS01 rna N/A GO:0000049 ... P60489 N/A
    927237 9d0j:1Q (2.5) BS02 rna N/A GO:0000049 ... P60489 N/A
    927238 9d0j:1Q (2.5) BS03 rna N/A GO:0000049 ... P60489 N/A
    927239 9d0j:1Q (2.5) BS04 MG N/A GO:0000049 ... P60489 N/A
    927240 9d0j:1Q (2.5) BS05 MG N/A GO:0000049 ... P60489 N/A
    927241 9d0j:1Q (2.5) BS06 MG N/A GO:0000049 ... P60489 N/A
    927242 9d0j:1Q (2.5) BS07 MG N/A GO:0000049 ... P60489 N/A
    927243 9d0j:1R (2.5) BS01 rna N/A GO:0003735 ... Q9Z9H5 N/A
    927244 9d0j:1R (2.5) BS02 MG N/A GO:0003735 ... Q9Z9H5 N/A
    927245 9d0j:1R (2.5) BS03 MG N/A GO:0003735 ... Q9Z9H5 N/A
    927246 9d0j:1S (2.5) BS01 rna N/A GO:0005737 ... Q5SHQ4 N/A
    927247 9d0j:1S (2.5) BS02 rna N/A GO:0005737 ... Q5SHQ4 N/A
    927248 9d0j:1S (2.5) BS03 MG N/A GO:0005737 ... Q5SHQ4 N/A
    927249 9d0j:1S (2.5) BS04 MG N/A GO:0005737 ... Q5SHQ4 N/A
    927250 9d0j:1T (2.5) BS01 rna N/A GO:0003735 ... P60490 N/A
    927251 9d0j:1T (2.5) BS02 rna N/A GO:0003735 ... P60490 N/A
    927252 9d0j:1U (2.5) BS01 rna N/A GO:0000027 ... P60491 N/A
    927253 9d0j:1U (2.5) BS02 MG N/A GO:0000027 ... P60491 N/A
    927254 9d0j:1U (2.5) BS03 MG N/A GO:0000027 ... P60491 N/A
    927255 9d0j:1U (2.5) BS04 MG N/A GO:0000027 ... P60491 N/A
    927256 9d0j:1U (2.5) BS05 MG N/A GO:0000027 ... P60491 N/A
    927257 9d0j:1U (2.5) BS06 MG N/A GO:0000027 ... P60491 N/A
    927258 9d0j:1U (2.5) BS07 MG N/A GO:0000027 ... P60491 N/A
    927259 9d0j:1U (2.5) BS08 MG N/A GO:0000027 ... P60491 N/A
    927260 9d0j:1V (2.5) BS01 rna N/A GO:0003735 ... P60492 N/A
    927261 9d0j:1V (2.5) BS02 MG N/A GO:0003735 ... P60492 N/A
    927262 9d0j:1V (2.5) BS03 MG N/A GO:0003735 ... P60492 N/A
    927263 9d0j:1V (2.5) BS04 MG N/A GO:0003735 ... P60492 N/A
    927264 9d0j:1V (2.5) BS05 MG N/A GO:0003735 ... P60492 N/A
    927265 9d0j:1V (2.5) BS06 MG N/A GO:0003735 ... P60492 N/A
    927266 9d0j:1W (2.5) BS01 rna N/A GO:0003735 ... Q5SHP3 N/A
    927267 9d0j:1W (2.5) BS02 MG N/A GO:0003735 ... Q5SHP3 N/A
    927268 9d0j:1W (2.5) BS03 MG N/A GO:0003735 ... Q5SHP3 N/A
    927269 9d0j:1W (2.5) BS04 MG N/A GO:0003735 ... Q5SHP3 N/A
    927270 9d0j:1W (2.5) BS05 MG N/A GO:0003735 ... Q5SHP3 N/A
    927271 9d0j:1W (2.5) BS06 MG N/A GO:0003735 ... Q5SHP3 N/A
    927272 9d0j:1X (2.5) BS01 rna N/A GO:0005840 ... Q5SHP0 N/A
    927273 9d0j:1X (2.5) BS02 MG N/A GO:0005840 ... Q5SHP0 N/A
    927274 9d0j:1X (2.5) BS03 MG N/A GO:0005840 ... Q5SHP0 N/A
    927275 9d0j:1X (2.5) BS04 MG N/A GO:0005840 ... Q5SHP0 N/A
    927276 9d0j:1X (2.5) BS05 MG N/A GO:0005840 ... Q5SHP0 N/A
    927277 9d0j:1X (2.5) BS06 MG N/A GO:0005840 ... Q5SHP0 N/A
    927278 9d0j:1Y (2.5) BS01 rna N/A GO:0005840 ... Q5SHP9 N/A
    927279 9d0j:1Y (2.5) BS02 MG N/A GO:0005840 ... Q5SHP9 N/A
    927280 9d0j:1Y (2.5) BS03 ZN N/A GO:0005840 ... Q5SHP9 N/A
    927281 9d0j:1Z (2.5) BS01 rna N/A GO:0003723 ... Q5SHZ1 N/A
    927282 9d0j:1Z (2.5) BS02 rna N/A GO:0003723 ... Q5SHZ1 N/A
    927283 9d0j:1b (2.5) BS01 rna N/A GO:0003735 ... P80371 N/A
    927284 9d0j:1c (2.5) BS01 rna N/A GO:0003729 ... P80372 N/A
    927285 9d0j:1d (2.5) BS01 rna N/A GO:0003735 ... P80373 N/A
    927286 9d0j:1d (2.5) BS02 SF4 N/A GO:0003735 ... P80373 N/A
    927287 9d0j:1e (2.5) BS01 rna N/A GO:0005840 ... Q5SHQ5 N/A
    927288 9d0j:1e (2.5) BS02 MG N/A GO:0005840 ... Q5SHQ5 N/A
    927289 9d0j:1f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 N/A
    927290 9d0j:1g (2.5) BS01 rna N/A GO:0000049 ... P17291 N/A
    927291 9d0j:1g (2.5) BS02 rna N/A GO:0000049 ... P17291 N/A
    927292 9d0j:1h (2.5) BS01 rna N/A GO:0005840 ... P0DOY9 N/A
    927293 9d0j:1i (2.5) BS01 rna N/A GO:0000049 ... P80374 N/A
    927294 9d0j:1j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 N/A
    927295 9d0j:1k (2.5) BS01 rna N/A GO:0005840 ... P80376 N/A
    927296 9d0j:1k (2.5) BS02 MG N/A GO:0005840 ... P80376 N/A
    927297 9d0j:1l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 N/A
    927298 9d0j:1l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 N/A
    927299 9d0j:1m (2.5) BS01 rna N/A GO:0000049 ... P80377 N/A
    927300 9d0j:1m (2.5) BS02 rna N/A GO:0000049 ... P80377 N/A
    927301 9d0j:1m (2.5) BS03 rna N/A GO:0000049 ... P80377 N/A
    927302 9d0j:1m (2.5) BS04 MG N/A GO:0000049 ... P80377 N/A
    927303 9d0j:1n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    927304 9d0j:1n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    927305 9d0j:1o (2.5) BS01 rna N/A GO:0005737 ... Q5SJ76 N/A
    927306 9d0j:1o (2.5) BS02 rna N/A GO:0005737 ... Q5SJ76 N/A
    927307 9d0j:1p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 N/A
    927308 9d0j:1q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    927309 9d0j:1r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 N/A
    927310 9d0j:1s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 N/A
    927311 9d0j:1t (2.5) BS01 rna N/A GO:0005840 ... P80380 N/A
    927312 9d0j:20 (2.5) BS01 rna N/A GO:0003735 ... P60493 N/A
    927313 9d0j:20 (2.5) BS02 rna N/A GO:0003735 ... P60493 N/A
    927314 9d0j:21 (2.5) BS01 rna N/A GO:0005840 ... P60494 N/A
    927315 9d0j:21 (2.5) BS02 MG N/A GO:0005840 ... P60494 N/A
    927316 9d0j:22 (2.5) BS01 rna N/A GO:0005840 ... Q5SHP6 N/A
    927317 9d0j:23 (2.5) BS01 rna N/A GO:0005840 ... Q5SHQ6 N/A
    927318 9d0j:23 (2.5) BS02 rna N/A GO:0005840 ... Q5SHQ6 N/A
    927319 9d0j:23 (2.5) BS03 MG N/A GO:0005840 ... Q5SHQ6 N/A
    927320 9d0j:24 (2.5) BS01 rna N/A GO:0005840 ... Q5SJE1 N/A
    927321 9d0j:24 (2.5) BS02 ZN N/A GO:0005840 ... Q5SJE1 N/A
    927322 9d0j:25 (2.5) BS01 rna N/A GO:0005840 ... P80339 N/A
    927323 9d0j:25 (2.5) BS02 MG N/A GO:0005840 ... P80339 N/A
    927324 9d0j:25 (2.5) BS03 ZN N/A GO:0005840 ... P80339 N/A
    927325 9d0j:26 (2.5) BS01 rna N/A GO:0000049 ... P35871 N/A
    927326 9d0j:26 (2.5) BS02 ZN N/A GO:0000049 ... P35871 N/A
    927327 9d0j:27 (2.5) BS01 rna N/A GO:0005840 ... P80340 N/A
    927328 9d0j:27 (2.5) BS02 MG N/A GO:0005840 ... P80340 N/A
    927329 9d0j:28 (2.5) BS01 rna N/A GO:0003735 ... Q5SKU1 N/A
    927330 9d0j:28 (2.5) BS02 MG N/A GO:0003735 ... Q5SKU1 N/A
    927331 9d0j:29 (2.5) BS01 rna N/A GO:0005737 ... Q5SHR2 N/A
    927332 9d0j:29 (2.5) BS02 ZN N/A GO:0005737 ... Q5SHR2 N/A
    927333 9d0j:2D (2.5) BS01 rna N/A GO:0002181 ... P60405 N/A
    927334 9d0j:2D (2.5) BS02 rna N/A GO:0002181 ... P60405 N/A
    927335 9d0j:2D (2.5) BS03 MG N/A GO:0002181 ... P60405 N/A
    927336 9d0j:2D (2.5) BS04 MG N/A GO:0002181 ... P60405 N/A
    927337 9d0j:2D (2.5) BS05 MG N/A GO:0002181 ... P60405 N/A
    927338 9d0j:2D (2.5) BS06 MG N/A GO:0002181 ... P60405 N/A
    927339 9d0j:2D (2.5) BS07 MG N/A GO:0002181 ... P60405 N/A
    927340 9d0j:2E (2.5) BS01 rna N/A GO:0003735 ... Q5SHN8 N/A
    927341 9d0j:2E (2.5) BS02 MG N/A GO:0003735 ... Q5SHN8 N/A
    927342 9d0j:2F (2.5) BS01 rna N/A GO:0003735 ... Q5SHN9 N/A
    927343 9d0j:2F (2.5) BS02 MG N/A GO:0003735 ... Q5SHN9 N/A
    927344 9d0j:2F (2.5) BS03 MG N/A GO:0003735 ... Q5SHN9 N/A
    927345 9d0j:2F (2.5) BS04 MG N/A GO:0003735 ... Q5SHN9 N/A
    927346 9d0j:2F (2.5) BS05 MG N/A GO:0003735 ... Q5SHN9 N/A
    927347 9d0j:2G (2.5) BS01 rna N/A GO:0000049 ... Q5SHQ0 N/A
    927348 9d0j:2G (2.5) BS02 rna N/A GO:0000049 ... Q5SHQ0 N/A
    927349 9d0j:2G (2.5) BS03 rna N/A GO:0000049 ... Q5SHQ0 N/A
    927350 9d0j:2H (2.5) BS01 rna N/A GO:0002181 ... P0DOY8 N/A
    927351 9d0j:2I (2.5) BS01 rna N/A GO:0005840 ... Q5SLQ1 N/A
    927352 9d0j:2N (2.5) BS01 rna N/A GO:0003729 ... P60488 N/A
    927353 9d0j:2O (2.5) BS01 rna N/A GO:0003735 ... Q5SHP8 N/A
    927354 9d0j:2O (2.5) BS02 rna N/A GO:0003735 ... Q5SHP8 N/A
    927355 9d0j:2P (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ7 N/A
    927356 9d0j:2Q (2.5) BS01 rna N/A GO:0000049 ... P60489 N/A
    927357 9d0j:2Q (2.5) BS02 rna N/A GO:0000049 ... P60489 N/A
    927358 9d0j:2Q (2.5) BS03 rna N/A GO:0000049 ... P60489 N/A
    927359 9d0j:2Q (2.5) BS04 MG N/A GO:0000049 ... P60489 N/A
    927360 9d0j:2Q (2.5) BS05 MG N/A GO:0000049 ... P60489 N/A
    927361 9d0j:2R (2.5) BS01 rna N/A GO:0003735 ... Q9Z9H5 N/A
    927362 9d0j:2S (2.5) BS01 rna N/A GO:0005737 ... Q5SHQ4 N/A
    927363 9d0j:2S (2.5) BS02 rna N/A GO:0005737 ... Q5SHQ4 N/A
    927364 9d0j:2T (2.5) BS01 rna N/A GO:0003735 ... P60490 N/A
    927365 9d0j:2T (2.5) BS02 rna N/A GO:0003735 ... P60490 N/A
    927366 9d0j:2U (2.5) BS01 rna N/A GO:0000027 ... P60491 N/A
    927367 9d0j:2U (2.5) BS02 MG N/A GO:0000027 ... P60491 N/A
    927368 9d0j:2V (2.5) BS01 rna N/A GO:0003735 ... P60492 N/A
    927369 9d0j:2V (2.5) BS02 MG N/A GO:0003735 ... P60492 N/A
    927370 9d0j:2W (2.5) BS01 rna N/A GO:0003735 ... Q5SHP3 N/A
    927371 9d0j:2W (2.5) BS02 MG N/A GO:0003735 ... Q5SHP3 N/A
    927372 9d0j:2W (2.5) BS03 MG N/A GO:0003735 ... Q5SHP3 N/A
    927373 9d0j:2X (2.5) BS01 rna N/A GO:0005840 ... Q5SHP0 N/A
    927374 9d0j:2X (2.5) BS02 MG N/A GO:0005840 ... Q5SHP0 N/A
    927375 9d0j:2Y (2.5) BS01 rna N/A GO:0005840 ... Q5SHP9 N/A
    927376 9d0j:2Y (2.5) BS02 ZN N/A GO:0005840 ... Q5SHP9 N/A
    927377 9d0j:2Z (2.5) BS01 rna N/A GO:0003723 ... Q5SHZ1 N/A
    927378 9d0j:2Z (2.5) BS02 rna N/A GO:0003723 ... Q5SHZ1 N/A
    927379 9d0j:2Z (2.5) BS03 MG N/A GO:0003723 ... Q5SHZ1 N/A
    927380 9d0j:2b (2.5) BS01 rna N/A GO:0003735 ... P80371 N/A
    927381 9d0j:2c (2.5) BS01 rna N/A GO:0003729 ... P80372 N/A
    927382 9d0j:2d (2.5) BS01 rna N/A GO:0003735 ... P80373 N/A
    927383 9d0j:2d (2.5) BS02 MG N/A GO:0003735 ... P80373 N/A
    927384 9d0j:2d (2.5) BS03 SF4 N/A GO:0003735 ... P80373 N/A
    927385 9d0j:2e (2.5) BS01 rna N/A GO:0005840 ... Q5SHQ5 N/A
    927386 9d0j:2e (2.5) BS02 MG N/A GO:0005840 ... Q5SHQ5 N/A
    927387 9d0j:2f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 N/A
    927388 9d0j:2f (2.5) BS02 MG N/A GO:0003735 ... Q5SLP8 N/A
    927389 9d0j:2g (2.5) BS01 rna N/A GO:0000049 ... P17291 N/A
    927390 9d0j:2g (2.5) BS02 rna N/A GO:0000049 ... P17291 N/A
    927391 9d0j:2h (2.5) BS01 rna N/A GO:0005840 ... P0DOY9 N/A
    927392 9d0j:2i (2.5) BS01 rna N/A GO:0000049 ... P80374 N/A
    927393 9d0j:2j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 N/A
    927394 9d0j:2k (2.5) BS01 rna N/A GO:0005840 ... P80376 N/A
    927395 9d0j:2k (2.5) BS02 MG N/A GO:0005840 ... P80376 N/A
    927396 9d0j:2l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 N/A
    927397 9d0j:2l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 N/A
    927398 9d0j:2l (2.5) BS03 MG N/A GO:0000049 ... Q5SHN3 N/A
    927399 9d0j:2l (2.5) BS04 MG N/A GO:0000049 ... Q5SHN3 N/A
    927400 9d0j:2m (2.5) BS01 rna N/A GO:0000049 ... P80377 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).