SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    927401 9d0j:2m (2.5) BS02 rna N/A GO:0000049 ... P80377 N/A
    927402 9d0j:2m (2.5) BS03 rna N/A GO:0000049 ... P80377 N/A
    927403 9d0j:2m (2.5) BS04 rna N/A GO:0000049 ... P80377 N/A
    927404 9d0j:2n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 N/A
    927405 9d0j:2n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 N/A
    927406 9d0j:2o (2.5) BS01 rna N/A GO:0005737 ... Q5SJ76 N/A
    927407 9d0j:2o (2.5) BS02 rna N/A GO:0005737 ... Q5SJ76 N/A
    927408 9d0j:2p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 N/A
    927409 9d0j:2q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 N/A
    927410 9d0j:2q (2.5) BS02 MG N/A GO:0003735 ... P0DOY7 N/A
    927411 9d0j:2q (2.5) BS03 MG N/A GO:0003735 ... P0DOY7 N/A
    927412 9d0j:2r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 N/A
    927413 9d0j:2s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 N/A
    927414 9d0j:2t (2.5) BS01 rna N/A GO:0005840 ... P80380 N/A
    927415 9d0j:2t (2.5) BS02 MG N/A GO:0005840 ... P80380 N/A
    927416 9d0z:A (1.8) BS01 CU N/A GO:0004497 ... G2Q7A5 39563485
    927417 9d0z:B (1.8) BS01 CU N/A GO:0004497 ... G2Q7A5 39563485
    927418 9d11:A (1.684) BS01 A1A1O N/A N/A P51531 39745064
    927419 9d11:B (1.684) BS01 A1A1O N/A N/A P51531 39745064
    927420 9d11:C (1.684) BS01 A1A1O N/A N/A P51531 39745064
    927421 9d12:A (2.099) BS01 A1A1P N/A N/A P51531 39745064
    927422 9d12:B (2.099) BS01 A1A1P N/A N/A P51531 39745064
    927423 9d12:C (2.099) BS01 A1A1P N/A N/A P51531 39745064
    927424 9d1w:H (3.44) BS01 BMA N/A N/A N/A 39826122
    927425 9d1w:H (3.44) BS02 MAN N/A N/A N/A 39826122
    927426 9d1w:H (3.44) BS03 MAN N/A N/A N/A 39826122
    927427 9d1w:H (3.44) BS04 MAN N/A N/A N/A 39826122
    927428 9d1w:L (3.44) BS01 MAN N/A N/A N/A 39826122
    927429 9d2a:A (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    927430 9d2a:A (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    927431 9d2a:B (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    927432 9d2a:B (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    927433 9d2a:B (2.21) BS03 CO N/A GO:0000287 ... R9WS05 39527408
    927434 9d2a:C (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    927435 9d2a:C (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    927436 9d2a:D (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    927437 9d2a:D (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    927438 9d2c:A (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927439 9d2c:A (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927440 9d2c:A (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927441 9d2c:B (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927442 9d2c:B (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927443 9d2c:B (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927444 9d2c:C (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927445 9d2c:C (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927446 9d2c:C (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927447 9d2c:D (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927448 9d2c:D (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927449 9d2c:D (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927450 9d2c:E (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927451 9d2c:E (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927452 9d2c:E (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927453 9d2c:F (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927454 9d2c:F (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927455 9d2c:F (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927456 9d2c:H (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927457 9d2c:H (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927458 9d2c:H (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927459 9d2c:I (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927460 9d2c:I (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927461 9d2c:I (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927462 9d2c:J (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927463 9d2c:J (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927464 9d2c:J (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927465 9d2c:K (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927466 9d2c:K (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927467 9d2c:K (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927468 9d2c:L (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927469 9d2c:L (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927470 9d2c:L (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927471 9d2c:M (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927472 9d2c:M (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 N/A
    927473 9d2h:A (2.1) BS01 BLA N/A N/A Q09E27 39575537
    927474 9d2h:B (2.1) BS01 BLA N/A N/A Q09E27 39575537
    927475 9d2x:E (2.29) BS01 dna N/A N/A Q9DEW5 N/A
    927476 9d2x:E (2.29) BS02 dna N/A N/A Q9DEW5 N/A
    927477 9d2x:F (2.29) BS01 dna N/A N/A Q9DEW5 N/A
    927478 9d2x:F (2.29) BS02 dna N/A N/A Q9DEW5 N/A
    927479 9d32:A (3.1) BS01 ZN N/A N/A C7ECT9 39922192
    927480 9d34:A (1.42) BS01 peptide N/A N/A Q8TDY2 N/A
    927481 9d3d:H (3.41) BS01 BMA N/A N/A N/A 39826122
    927482 9d3d:H (3.41) BS02 MAN N/A N/A N/A 39826122
    927483 9d3e:A (3.02) BS01 CLR N/A GO:0004930 ... N/A 39217154
    927484 9d3e:A (3.02) BS02 EBX N/A GO:0004930 ... N/A 39217154
    927485 9d3e:A (3.02) BS03 A1A1W N/A GO:0004930 ... N/A 39217154
    927486 9d3g:A (3.26) BS01 CLR N/A GO:0004930 ... N/A 39217154
    927487 9d3g:A (3.26) BS02 EBX N/A GO:0004930 ... N/A 39217154
    927488 9d3g:A (3.26) BS03 A1A2A N/A GO:0004930 ... N/A 39217154
    927489 9d44:A (1.42) BS01 CO N/A N/A A0AAN3A5R0 39663570
    927490 9d46:A (3.06) BS01 dna N/A N/A P25454 N/A
    927491 9d46:A (3.06) BS02 ATP N/A N/A P25454 N/A
    927492 9d46:A (3.06) BS03 MG N/A N/A P25454 N/A
    927493 9d46:B (3.06) BS01 dna N/A N/A P25454 N/A
    927494 9d46:B (3.06) BS02 ATP N/A N/A P25454 N/A
    927495 9d46:B (3.06) BS03 ATP N/A N/A P25454 N/A
    927496 9d46:C (3.06) BS01 dna N/A N/A P25454 N/A
    927497 9d46:C (3.06) BS02 ATP N/A N/A P25454 N/A
    927498 9d46:C (3.06) BS03 ATP N/A N/A P25454 N/A
    927499 9d46:D (3.06) BS01 dna N/A N/A P25454 N/A
    927500 9d46:D (3.06) BS02 ATP N/A N/A P25454 N/A
    927501 9d46:D (3.06) BS03 ATP N/A N/A P25454 N/A
    927502 9d46:E (3.06) BS01 dna N/A N/A P25454 N/A
    927503 9d46:E (3.06) BS02 ATP N/A N/A P25454 N/A
    927504 9d46:E (3.06) BS03 ATP N/A N/A P25454 N/A
    927505 9d46:F (3.06) BS01 dna N/A N/A P25454 N/A
    927506 9d46:F (3.06) BS02 ATP N/A N/A P25454 N/A
    927507 9d46:F (3.06) BS03 MG N/A N/A P25454 N/A
    927508 9d46:F (3.06) BS04 ATP N/A N/A P25454 N/A
    927509 9d4e:A (1.7) BS01 A1A1Q N/A N/A Q9Y4B6 N/A
    927510 9d4e:B (1.7) BS01 A1A1Q N/A N/A Q9Y4B6 N/A
    927511 9d4n:A (2.9) BS01 dna N/A N/A P25453 N/A
    927512 9d4n:A (2.9) BS02 ATP N/A N/A P25453 N/A
    927513 9d4n:A (2.9) BS03 MG N/A N/A P25453 N/A
    927514 9d4n:B (2.9) BS01 dna N/A N/A P25453 N/A
    927515 9d4n:B (2.9) BS02 ATP N/A N/A P25453 N/A
    927516 9d4n:B (2.9) BS03 ATP N/A N/A P25453 N/A
    927517 9d4n:B (2.9) BS04 MG N/A N/A P25453 N/A
    927518 9d4n:B (2.9) BS05 MG N/A N/A P25453 N/A
    927519 9d4n:C (2.9) BS01 dna N/A N/A P25453 N/A
    927520 9d4n:C (2.9) BS02 ATP N/A N/A P25453 N/A
    927521 9d4n:C (2.9) BS03 ATP N/A N/A P25453 N/A
    927522 9d4n:C (2.9) BS04 MG N/A N/A P25453 N/A
    927523 9d4n:D (2.9) BS01 dna N/A N/A P25453 N/A
    927524 9d4n:D (2.9) BS02 ATP N/A N/A P25453 N/A
    927525 9d4n:D (2.9) BS03 ATP N/A N/A P25453 N/A
    927526 9d4n:D (2.9) BS04 MG N/A N/A P25453 N/A
    927527 9d4n:D (2.9) BS05 MG N/A N/A P25453 N/A
    927528 9d4n:E (2.9) BS01 dna N/A N/A P25453 N/A
    927529 9d4n:E (2.9) BS02 ATP N/A N/A P25453 N/A
    927530 9d4n:E (2.9) BS03 ATP N/A N/A P25453 N/A
    927531 9d4n:E (2.9) BS04 MG N/A N/A P25453 N/A
    927532 9d4n:E (2.9) BS05 MG N/A N/A P25453 N/A
    927533 9d4n:F (2.9) BS01 dna N/A N/A P25453 N/A
    927534 9d4n:F (2.9) BS02 ATP N/A N/A P25453 N/A
    927535 9d4n:F (2.9) BS03 ATP N/A N/A P25453 N/A
    927536 9d4n:F (2.9) BS04 MG N/A N/A P25453 N/A
    927537 9d4n:F (2.9) BS05 MG N/A N/A P25453 N/A
    927538 9d5j:A (2.8) BS01 rna N/A N/A P78563 39456162
    927539 9d5j:A (2.8) BS02 rna N/A N/A P78563 39456162
    927540 9d5j:A (2.8) BS03 IHP N/A N/A P78563 39456162
    927541 9d5j:A (2.8) BS04 ZN N/A N/A P78563 39456162
    927542 9d5j:B (2.8) BS01 rna N/A N/A P78563 39456162
    927543 9d5j:B (2.8) BS02 rna N/A N/A P78563 39456162
    927544 9d5j:B (2.8) BS03 IHP N/A N/A P78563 39456162
    927545 9d5j:B (2.8) BS04 ZN N/A N/A P78563 39456162
    927546 9d5k:A (2.697) BS01 rna N/A N/A P78563 39456162
    927547 9d5k:A (2.697) BS02 rna N/A N/A P78563 39456162
    927548 9d5k:A (2.697) BS03 IHP N/A N/A P78563 39456162
    927549 9d5k:A (2.697) BS04 ZN N/A N/A P78563 39456162
    927550 9d5k:B (2.697) BS01 rna N/A N/A P78563 39456162
    927551 9d5k:B (2.697) BS02 rna N/A N/A P78563 39456162
    927552 9d5k:B (2.697) BS03 IHP N/A N/A P78563 39456162
    927553 9d5k:B (2.697) BS04 ZN N/A N/A P78563 39456162
    927554 9d5t:A (1.56) BS01 CU N/A N/A A0AAN3A5R0 39663570
    927555 9d5z:A (1.7) BS01 A1A16 N/A N/A P61964 N/A
    927556 9d5z:B (1.7) BS01 A1A16 N/A N/A P61964 N/A
    927557 9d60:A (1.36) BS01 ZN N/A N/A A0AAN3A5R0 39663570
    927558 9d61:A (3.58) BS01 JDC N/A N/A P41145 39775170
    927559 9d66:A (2.98) BS01 ASP N/A N/A P43005 39282329
    927560 9d66:A (2.98) BS02 NA N/A N/A P43005 39282329
    927561 9d66:A (2.98) BS03 NA N/A N/A P43005 39282329
    927562 9d66:A (2.98) BS04 NA N/A N/A P43005 39282329
    927563 9d66:B (2.98) BS01 NA N/A N/A P43005 39282329
    927564 9d66:B (2.98) BS02 NA N/A N/A P43005 39282329
    927565 9d66:B (2.98) BS03 ASP N/A N/A P43005 39282329
    927566 9d66:B (2.98) BS04 NA N/A N/A P43005 39282329
    927567 9d66:C (2.98) BS01 NA N/A N/A P43005 39282329
    927568 9d66:C (2.98) BS02 NA N/A N/A P43005 39282329
    927569 9d66:C (2.98) BS03 ASP N/A N/A P43005 39282329
    927570 9d66:C (2.98) BS04 NA N/A N/A P43005 39282329
    927571 9d67:A (2.87) BS01 DAS N/A N/A P43005 39282329
    927572 9d67:A (2.87) BS02 NA N/A N/A P43005 39282329
    927573 9d67:A (2.87) BS03 NA N/A N/A P43005 39282329
    927574 9d67:A (2.87) BS04 NA N/A N/A P43005 39282329
    927575 9d67:B (2.87) BS01 NA N/A N/A P43005 39282329
    927576 9d67:B (2.87) BS02 NA N/A N/A P43005 39282329
    927577 9d67:B (2.87) BS03 NA N/A N/A P43005 39282329
    927578 9d67:B (2.87) BS04 DAS N/A N/A P43005 39282329
    927579 9d67:C (2.87) BS01 DAS N/A N/A P43005 39282329
    927580 9d67:C (2.87) BS02 NA N/A N/A P43005 39282329
    927581 9d67:C (2.87) BS03 NA N/A N/A P43005 39282329
    927582 9d67:C (2.87) BS04 NA N/A N/A P43005 39282329
    927583 9d68:A (2.58) BS01 CYS N/A N/A P43005 39282329
    927584 9d68:A (2.58) BS02 NA N/A N/A P43005 39282329
    927585 9d68:A (2.58) BS03 NA N/A N/A P43005 39282329
    927586 9d69:A (2.99) BS01 CYS N/A N/A P43005 39282329
    927587 9d69:A (2.99) BS02 NA N/A N/A P43005 39282329
    927588 9d69:A (2.99) BS03 NA N/A N/A P43005 39282329
    927589 9d69:A (2.99) BS04 NA N/A N/A P43005 39282329
    927590 9d6a:A (2.6) BS01 CYS N/A N/A P43005 39282329
    927591 9d6a:A (2.6) BS02 NA N/A N/A P43005 39282329
    927592 9d6a:A (2.6) BS03 NA N/A N/A P43005 39282329
    927593 9d6a:A (2.6) BS04 NA N/A N/A P43005 39282329
    927594 9d6c:A (2.1) BS01 QNG N/A N/A P04591 39416065
    927595 9d6c:A (2.1) BS02 QNG N/A N/A P04591 39416065
    927596 9d6c:B (2.1) BS01 QNG N/A N/A P04591 39416065
    927597 9d6c:B (2.1) BS02 QNG N/A N/A P04591 39416065
    927598 9d6c:B (2.1) BS03 IHP N/A N/A P04591 39416065
    927599 9d6c:C (2.1) BS01 IHP N/A N/A P04591 39416065
    927600 9d6c:C (2.1) BS02 QNG N/A N/A P04591 39416065

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).