SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    928201 9d7t:1F (2.7) BS07 MG N/A GO:0003735 ... Q5SHN9 39415050
    928202 9d7t:1F (2.7) BS08 MG N/A GO:0003735 ... Q5SHN9 39415050
    928203 9d7t:1F (2.7) BS09 MG N/A GO:0003735 ... Q5SHN9 39415050
    928204 9d7t:1F (2.7) BS10 MG N/A GO:0003735 ... Q5SHN9 39415050
    928205 9d7t:1G (2.7) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    928206 9d7t:1G (2.7) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    928207 9d7t:1G (2.7) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    928208 9d7t:1G (2.7) BS04 MG N/A GO:0000049 ... Q5SHQ0 39415050
    928209 9d7t:1H (2.7) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    928210 9d7t:1I (2.7) BS01 rna N/A GO:0005840 ... Q5SLQ1 39415050
    928211 9d7t:1N (2.7) BS01 rna N/A GO:0003729 ... P60488 39415050
    928212 9d7t:1N (2.7) BS02 MG N/A GO:0003729 ... P60488 39415050
    928213 9d7t:1N (2.7) BS03 MG N/A GO:0003729 ... P60488 39415050
    928214 9d7t:1N (2.7) BS04 MG N/A GO:0003729 ... P60488 39415050
    928215 9d7t:1O (2.7) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    928216 9d7t:1O (2.7) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    928217 9d7t:1P (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    928218 9d7t:1P (2.7) BS02 MG N/A GO:0003735 ... Q5SHQ7 39415050
    928219 9d7t:1P (2.7) BS03 MG N/A GO:0003735 ... Q5SHQ7 39415050
    928220 9d7t:1Q (2.7) BS01 rna N/A GO:0000049 ... P60489 39415050
    928221 9d7t:1Q (2.7) BS02 rna N/A GO:0000049 ... P60489 39415050
    928222 9d7t:1Q (2.7) BS03 MG N/A GO:0000049 ... P60489 39415050
    928223 9d7t:1Q (2.7) BS04 MG N/A GO:0000049 ... P60489 39415050
    928224 9d7t:1Q (2.7) BS05 MG N/A GO:0000049 ... P60489 39415050
    928225 9d7t:1R (2.7) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    928226 9d7t:1R (2.7) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    928227 9d7t:1S (2.7) BS01 rna N/A GO:0005737 ... Q5SHQ4 39415050
    928228 9d7t:1S (2.7) BS02 rna N/A GO:0005737 ... Q5SHQ4 39415050
    928229 9d7t:1T (2.7) BS01 rna N/A GO:0003735 ... P60490 39415050
    928230 9d7t:1T (2.7) BS02 rna N/A GO:0003735 ... P60490 39415050
    928231 9d7t:1U (2.7) BS01 rna N/A GO:0000027 ... P60491 39415050
    928232 9d7t:1U (2.7) BS02 MG N/A GO:0000027 ... P60491 39415050
    928233 9d7t:1U (2.7) BS03 MG N/A GO:0000027 ... P60491 39415050
    928234 9d7t:1U (2.7) BS04 MG N/A GO:0000027 ... P60491 39415050
    928235 9d7t:1U (2.7) BS05 MG N/A GO:0000027 ... P60491 39415050
    928236 9d7t:1U (2.7) BS06 MG N/A GO:0000027 ... P60491 39415050
    928237 9d7t:1V (2.7) BS01 rna N/A GO:0003735 ... P60492 39415050
    928238 9d7t:1V (2.7) BS02 MG N/A GO:0003735 ... P60492 39415050
    928239 9d7t:1V (2.7) BS03 MG N/A GO:0003735 ... P60492 39415050
    928240 9d7t:1V (2.7) BS04 MG N/A GO:0003735 ... P60492 39415050
    928241 9d7t:1V (2.7) BS05 MG N/A GO:0003735 ... P60492 39415050
    928242 9d7t:1V (2.7) BS06 MG N/A GO:0003735 ... P60492 39415050
    928243 9d7t:1W (2.7) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    928244 9d7t:1W (2.7) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    928245 9d7t:1X (2.7) BS01 rna N/A GO:0005840 ... Q5SHP0 39415050
    928246 9d7t:1Y (2.7) BS01 rna N/A GO:0005840 ... Q5SHP9 39415050
    928247 9d7t:1Y (2.7) BS02 ZN N/A GO:0005840 ... Q5SHP9 39415050
    928248 9d7t:1Z (2.7) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    928249 9d7t:1Z (2.7) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    928250 9d7t:1b (2.7) BS01 rna N/A GO:0003735 ... P80371 39415050
    928251 9d7t:1c (2.7) BS01 rna N/A GO:0003729 ... P80372 39415050
    928252 9d7t:1d (2.7) BS01 rna N/A GO:0003735 ... P80373 39415050
    928253 9d7t:1d (2.7) BS02 SF4 N/A GO:0003735 ... P80373 39415050
    928254 9d7t:1e (2.7) BS01 rna N/A GO:0005840 ... Q5SHQ5 39415050
    928255 9d7t:1f (2.7) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    928256 9d7t:1f (2.7) BS02 MG N/A GO:0003735 ... Q5SLP8 39415050
    928257 9d7t:1g (2.7) BS01 rna N/A GO:0000049 ... P17291 39415050
    928258 9d7t:1g (2.7) BS02 rna N/A GO:0000049 ... P17291 39415050
    928259 9d7t:1h (2.7) BS01 rna N/A GO:0005840 ... P0DOY9 39415050
    928260 9d7t:1i (2.7) BS01 rna N/A GO:0000049 ... P80374 39415050
    928261 9d7t:1i (2.7) BS02 rna N/A GO:0000049 ... P80374 39415050
    928262 9d7t:1j (2.7) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    928263 9d7t:1k (2.7) BS01 rna N/A GO:0005840 ... P80376 39415050
    928264 9d7t:1k (2.7) BS02 MG N/A GO:0005840 ... P80376 39415050
    928265 9d7t:1l (2.7) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    928266 9d7t:1m (2.7) BS01 rna N/A GO:0000049 ... P80377 39415050
    928267 9d7t:1m (2.7) BS02 rna N/A GO:0000049 ... P80377 39415050
    928268 9d7t:1m (2.7) BS03 MG N/A GO:0000049 ... P80377 39415050
    928269 9d7t:1n (2.7) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    928270 9d7t:1n (2.7) BS02 MG N/A GO:0003735 ... P0DOY6 39415050
    928271 9d7t:1n (2.7) BS03 ZN N/A GO:0003735 ... P0DOY6 39415050
    928272 9d7t:1o (2.7) BS01 rna N/A GO:0005737 ... Q5SJ76 39415050
    928273 9d7t:1o (2.7) BS02 rna N/A GO:0005737 ... Q5SJ76 39415050
    928274 9d7t:1p (2.7) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    928275 9d7t:1q (2.7) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    928276 9d7t:1r (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    928277 9d7t:1s (2.7) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    928278 9d7t:1t (2.7) BS01 rna N/A GO:0005840 ... P80380 39415050
    928279 9d7t:1w (2.7) BS01 rna N/A GO:0005737 ... P96077 39415050
    928280 9d7t:1w (2.7) BS02 rna N/A GO:0005737 ... P96077 39415050
    928281 9d7t:1w (2.7) BS03 rna N/A GO:0005737 ... P96077 39415050
    928282 9d7t:1w (2.7) BS04 rna N/A GO:0005737 ... P96077 39415050
    928283 9d7t:1w (2.7) BS05 peptide N/A GO:0005737 ... P96077 39415050
    928284 9d7t:1w (2.7) BS06 MG N/A GO:0005737 ... P96077 39415050
    928285 9d7t:1w (2.7) BS07 MG N/A GO:0005737 ... P96077 39415050
    928286 9d7t:20 (2.7) BS01 rna N/A GO:0003735 ... P60493 39415050
    928287 9d7t:20 (2.7) BS02 rna N/A GO:0003735 ... P60493 39415050
    928288 9d7t:21 (2.7) BS01 rna N/A GO:0005840 ... P60494 39415050
    928289 9d7t:21 (2.7) BS02 MG N/A GO:0005840 ... P60494 39415050
    928290 9d7t:22 (2.7) BS01 rna N/A GO:0005840 ... Q5SHP6 39415050
    928291 9d7t:23 (2.7) BS01 rna N/A GO:0005840 ... Q5SHQ6 39415050
    928292 9d7t:23 (2.7) BS02 rna N/A GO:0005840 ... Q5SHQ6 39415050
    928293 9d7t:24 (2.7) BS01 rna N/A GO:0005840 ... Q5SJE1 39415050
    928294 9d7t:24 (2.7) BS02 ZN N/A GO:0005840 ... Q5SJE1 39415050
    928295 9d7t:25 (2.7) BS01 rna N/A GO:0005840 ... P80339 39415050
    928296 9d7t:25 (2.7) BS02 ZN N/A GO:0005840 ... P80339 39415050
    928297 9d7t:26 (2.7) BS01 rna N/A GO:0000049 ... P35871 39415050
    928298 9d7t:26 (2.7) BS02 ZN N/A GO:0000049 ... P35871 39415050
    928299 9d7t:27 (2.7) BS01 rna N/A GO:0005840 ... P80340 39415050
    928300 9d7t:28 (2.7) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    928301 9d7t:29 (2.7) BS01 rna N/A GO:0005737 ... Q5SHR2 39415050
    928302 9d7t:29 (2.7) BS02 ZN N/A GO:0005737 ... Q5SHR2 39415050
    928303 9d7t:2D (2.7) BS01 rna N/A GO:0002181 ... P60405 39415050
    928304 9d7t:2D (2.7) BS02 rna N/A GO:0002181 ... P60405 39415050
    928305 9d7t:2D (2.7) BS03 MG N/A GO:0002181 ... P60405 39415050
    928306 9d7t:2D (2.7) BS04 MG N/A GO:0002181 ... P60405 39415050
    928307 9d7t:2D (2.7) BS05 MG N/A GO:0002181 ... P60405 39415050
    928308 9d7t:2D (2.7) BS06 MG N/A GO:0002181 ... P60405 39415050
    928309 9d7t:2D (2.7) BS07 MG N/A GO:0002181 ... P60405 39415050
    928310 9d7t:2E (2.7) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    928311 9d7t:2E (2.7) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    928312 9d7t:2E (2.7) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    928313 9d7t:2E (2.7) BS04 MG N/A GO:0003735 ... Q5SHN8 39415050
    928314 9d7t:2F (2.7) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    928315 9d7t:2F (2.7) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    928316 9d7t:2F (2.7) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    928317 9d7t:2F (2.7) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    928318 9d7t:2F (2.7) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    928319 9d7t:2F (2.7) BS06 MG N/A GO:0003735 ... Q5SHN9 39415050
    928320 9d7t:2G (2.7) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    928321 9d7t:2G (2.7) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    928322 9d7t:2G (2.7) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    928323 9d7t:2H (2.7) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    928324 9d7t:2I (2.7) BS01 rna N/A GO:0005840 ... Q5SLQ1 39415050
    928325 9d7t:2N (2.7) BS01 rna N/A GO:0003729 ... P60488 39415050
    928326 9d7t:2O (2.7) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    928327 9d7t:2O (2.7) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    928328 9d7t:2P (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    928329 9d7t:2Q (2.7) BS01 rna N/A GO:0000049 ... P60489 39415050
    928330 9d7t:2Q (2.7) BS02 rna N/A GO:0000049 ... P60489 39415050
    928331 9d7t:2Q (2.7) BS03 MG N/A GO:0000049 ... P60489 39415050
    928332 9d7t:2R (2.7) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    928333 9d7t:2R (2.7) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    928334 9d7t:2S (2.7) BS01 rna N/A GO:0005737 ... Q5SHQ4 39415050
    928335 9d7t:2S (2.7) BS02 rna N/A GO:0005737 ... Q5SHQ4 39415050
    928336 9d7t:2T (2.7) BS01 rna N/A GO:0003735 ... P60490 39415050
    928337 9d7t:2T (2.7) BS02 rna N/A GO:0003735 ... P60490 39415050
    928338 9d7t:2U (2.7) BS01 rna N/A GO:0000027 ... P60491 39415050
    928339 9d7t:2U (2.7) BS02 MG N/A GO:0000027 ... P60491 39415050
    928340 9d7t:2V (2.7) BS01 rna N/A GO:0003735 ... P60492 39415050
    928341 9d7t:2V (2.7) BS02 MG N/A GO:0003735 ... P60492 39415050
    928342 9d7t:2V (2.7) BS03 MG N/A GO:0003735 ... P60492 39415050
    928343 9d7t:2W (2.7) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    928344 9d7t:2W (2.7) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    928345 9d7t:2X (2.7) BS01 rna N/A GO:0005840 ... Q5SHP0 39415050
    928346 9d7t:2X (2.7) BS02 MG N/A GO:0005840 ... Q5SHP0 39415050
    928347 9d7t:2X (2.7) BS03 MG N/A GO:0005840 ... Q5SHP0 39415050
    928348 9d7t:2Y (2.7) BS01 rna N/A GO:0005840 ... Q5SHP9 39415050
    928349 9d7t:2Y (2.7) BS02 ZN N/A GO:0005840 ... Q5SHP9 39415050
    928350 9d7t:2Z (2.7) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    928351 9d7t:2Z (2.7) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    928352 9d7t:2b (2.7) BS01 rna N/A GO:0003735 ... P80371 39415050
    928353 9d7t:2c (2.7) BS01 rna N/A GO:0003729 ... P80372 39415050
    928354 9d7t:2d (2.7) BS01 rna N/A GO:0003735 ... P80373 39415050
    928355 9d7t:2d (2.7) BS02 SF4 N/A GO:0003735 ... P80373 39415050
    928356 9d7t:2e (2.7) BS01 rna N/A GO:0005840 ... Q5SHQ5 39415050
    928357 9d7t:2e (2.7) BS02 MG N/A GO:0005840 ... Q5SHQ5 39415050
    928358 9d7t:2f (2.7) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    928359 9d7t:2g (2.7) BS01 rna N/A GO:0000049 ... P17291 39415050
    928360 9d7t:2g (2.7) BS02 rna N/A GO:0000049 ... P17291 39415050
    928361 9d7t:2h (2.7) BS01 rna N/A GO:0005840 ... P0DOY9 39415050
    928362 9d7t:2i (2.7) BS01 rna N/A GO:0000049 ... P80374 39415050
    928363 9d7t:2i (2.7) BS02 rna N/A GO:0000049 ... P80374 39415050
    928364 9d7t:2j (2.7) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    928365 9d7t:2k (2.7) BS01 rna N/A GO:0005840 ... P80376 39415050
    928366 9d7t:2k (2.7) BS02 MG N/A GO:0005840 ... P80376 39415050
    928367 9d7t:2l (2.7) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    928368 9d7t:2l (2.7) BS02 MG N/A GO:0000049 ... Q5SHN3 39415050
    928369 9d7t:2m (2.7) BS01 rna N/A GO:0000049 ... P80377 39415050
    928370 9d7t:2n (2.7) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    928371 9d7t:2n (2.7) BS02 ZN N/A GO:0003735 ... P0DOY6 39415050
    928372 9d7t:2o (2.7) BS01 rna N/A GO:0005737 ... Q5SJ76 39415050
    928373 9d7t:2o (2.7) BS02 rna N/A GO:0005737 ... Q5SJ76 39415050
    928374 9d7t:2p (2.7) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    928375 9d7t:2q (2.7) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    928376 9d7t:2r (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    928377 9d7t:2s (2.7) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    928378 9d7t:2t (2.7) BS01 rna N/A GO:0005840 ... P80380 39415050
    928379 9d7t:2t (2.7) BS02 MG N/A GO:0005840 ... P80380 39415050
    928380 9d7t:2w (2.7) BS01 rna N/A GO:0005737 ... P96077 39415050
    928381 9d7t:2w (2.7) BS02 rna N/A GO:0005737 ... P96077 39415050
    928382 9d7t:2w (2.7) BS03 rna N/A GO:0005737 ... P96077 39415050
    928383 9d7t:2w (2.7) BS04 rna N/A GO:0005737 ... P96077 39415050
    928384 9d7t:2w (2.7) BS05 MG N/A GO:0005737 ... P96077 39415050
    928385 9d85:C (3.59) BS01 rna N/A N/A Q57646 39639027
    928386 9d85:K (3.59) BS01 rna N/A N/A Q58530 39639027
    928387 9d86:A (1.88) BS01 SF4 N/A GO:0006400 ... Q9WZJ0 39644232
    928388 9d88:D (3.18) BS01 IHP N/A N/A P12493 39416065
    928389 9d88:G (3.18) BS01 IHP N/A N/A P12493 39416065
    928390 9d88:J (3.18) BS01 IHP N/A N/A P12493 39416065
    928391 9d88:P (3.18) BS01 IHP N/A N/A P12493 39416065
    928392 9d89:0 (1.95) BS01 rna N/A N/A C3SME7 39414793
    928393 9d89:1 (1.95) BS01 rna N/A N/A B7MGC4 39414793
    928394 9d89:B (1.95) BS01 rna N/A N/A P0A7Q1 39414793
    928395 9d89:C (1.95) BS01 rna N/A N/A A0A0E2L017 39414793
    928396 9d89:C (1.95) BS02 ZN N/A N/A A0A0E2L017 39414793
    928397 9d89:F (1.95) BS01 rna N/A N/A P60422 39414793
    928398 9d89:G (1.95) BS01 rna N/A N/A C3SQU2 39414793
    928399 9d89:H (1.95) BS01 rna N/A N/A A1AGK6 39414793
    928400 9d89:H (1.95) BS02 peptide N/A N/A A1AGK6 39414793

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).