SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    928401 9d89:I (1.95) BS01 rna N/A N/A A0A037Y8L6 39414793
    928402 9d89:J (1.95) BS01 rna N/A N/A N/A 39414793
    928403 9d89:K (1.95) BS01 rna N/A N/A C3SQV2 39414793
    928404 9d89:L (1.95) BS01 rna N/A N/A N/A 39414793
    928405 9d89:L (1.95) BS02 rna N/A N/A N/A 39414793
    928406 9d89:M (1.95) BS01 rna N/A N/A A0A828UBL8 39414793
    928407 9d89:f (1.95) BS01 rna N/A N/A A0A4P8BX24 39414793
    928408 9d89:f (1.95) BS02 rna N/A N/A A0A4P8BX24 39414793
    928409 9d89:g (1.95) BS01 rna N/A N/A C3SR17 39414793
    928410 9d89:h (1.95) BS01 rna N/A N/A N/A 39414793
    928411 9d89:i (1.95) BS01 rna N/A N/A P0AA12 39414793
    928412 9d89:j (1.95) BS01 rna N/A N/A S1NW45 39414793
    928413 9d89:l (1.95) BS01 rna N/A N/A N/A 39414793
    928414 9d89:l (1.95) BS02 rna N/A N/A N/A 39414793
    928415 9d89:l (1.95) BS03 MS6 N/A N/A N/A 39414793
    928416 9d89:n (1.95) BS01 rna N/A N/A N/A 39414793
    928417 9d89:n (1.95) BS02 rna N/A N/A N/A 39414793
    928418 9d89:o (1.95) BS01 rna N/A N/A S1PSA3 39414793
    928419 9d89:p (1.95) BS01 rna N/A N/A C3T7Q7 39414793
    928420 9d89:q (1.95) BS01 rna N/A N/A C3SSG2 39414793
    928421 9d89:r (1.95) BS01 rna N/A N/A P61175 39414793
    928422 9d89:t (1.95) BS01 rna N/A N/A A0A7U9LWC1 39414793
    928423 9d89:u (1.95) BS01 rna N/A N/A P68919 39414793
    928424 9d89:w (1.95) BS01 rna N/A N/A A0A0E2KZD0 39414793
    928425 9d89:x (1.95) BS01 rna N/A N/A P0A7M8 39414793
    928426 9d89:y (1.95) BS01 rna N/A N/A P0AG51 39414793
    928427 9d89:y (1.95) BS02 rna N/A N/A P0AG51 39414793
    928428 9d8a:A (1.65) BS01 GDP N/A GO:0003690 ... A0A367K070 N/A
    928429 9d8c:A (2.15) BS01 Y33 N/A N/A Q2TR58 39601221
    928430 9d8c:B (2.15) BS01 Y33 N/A N/A Q2TR58 39601221
    928431 9d8c:C (2.15) BS01 Y33 N/A N/A Q2TR58 39601221
    928432 9d8c:D (2.15) BS01 Y33 N/A N/A Q2TR58 39601221
    928433 9d8e:A (1.72) BS01 A1A29 N/A N/A Q04771 39541346
    928434 9d8e:B (1.72) BS01 A1A29 N/A N/A Q04771 39541346
    928435 9d8f:A (1.86) BS01 A1A3C N/A N/A Q04771 39541346
    928436 9d8f:B (1.86) BS01 A1A3C N/A N/A Q04771 39541346
    928437 9d8m:A (1.201) BS01 ZFJ N/A N/A P50120 N/A
    928438 9d8m:B (1.201) BS01 ZFJ N/A N/A P50120 N/A
    928439 9d8n:A (1.301) BS01 ZFJ N/A N/A P50120 N/A
    928440 9d8n:B (1.301) BS01 ZFJ N/A N/A P50120 N/A
    928441 9d8p:A (3.2) BS01 peptide N/A GO:0005515 ... Q6PID8 39548056
    928442 9d8s:A (2.12) BS01 AMP N/A GO:0004672 ... A3FQ16 N/A
    928443 9d8s:A (2.12) BS02 CA N/A GO:0004672 ... A3FQ16 N/A
    928444 9d8s:A (2.12) BS03 CA N/A GO:0004672 ... A3FQ16 N/A
    928445 9d8s:A (2.12) BS04 MG N/A GO:0004672 ... A3FQ16 N/A
    928446 9d8s:A (2.12) BS05 MG N/A GO:0004672 ... A3FQ16 N/A
    928447 9d8z:A (1.85) BS01 A1A3D N/A N/A Q04771 39541346
    928448 9d8z:B (1.85) BS01 A1A3D N/A N/A Q04771 39541346
    928449 9d93:Oa (2.85) BS01 peptide N/A N/A Q9B096 N/A
    928450 9d93:Oa (2.85) BS02 peptide N/A N/A Q9B096 N/A
    928451 9d93:Ob (2.85) BS01 peptide N/A N/A Q9B096 N/A
    928452 9d93:Ob (2.85) BS02 peptide N/A N/A Q9B096 N/A
    928453 9d93:Oc (2.85) BS01 peptide N/A N/A Q9B096 N/A
    928454 9d93:Oc (2.85) BS02 peptide N/A N/A Q9B096 N/A
    928455 9d9k:A (2.63) BS01 A1A23 N/A GO:0005524 ... Q9HW02 N/A
    928456 9d9k:A (2.63) BS02 A1A23 N/A GO:0005524 ... Q9HW02 N/A
    928457 9d9t:A (2.0) BS01 AG7 N/A N/A K4L8Z7 39873493
    928458 9d9y:A (1.8) BS01 AG7 N/A N/A Q83883 39873493
    928459 9d9y:B (1.8) BS01 AG7 N/A N/A Q83883 39873493
    928460 9da0:A (2.28) BS01 AG7 N/A N/A A0A7S9NT71 39873493
    928461 9da1:A (1.47) BS01 A1BBB N/A N/A O43598 39818772
    928462 9da1:A (1.47) BS02 A1BBB N/A N/A O43598 39818772
    928463 9da1:B (1.47) BS01 A1BBB N/A N/A O43598 39818772
    928464 9da1:B (1.47) BS02 A1BBB N/A N/A O43598 39818772
    928465 9da2:A (1.13) BS01 A1BBC N/A N/A O43598 39818772
    928466 9da2:A (1.13) BS02 A1BBC N/A N/A O43598 39818772
    928467 9da2:B (1.13) BS01 A1BBC N/A N/A O43598 39818772
    928468 9da2:B (1.13) BS02 A1BBC N/A N/A O43598 39818772
    928469 9da3:A (1.51) BS01 A1BBD N/A N/A O43598 39818772
    928470 9da3:A (1.51) BS02 A1BBD N/A N/A O43598 39818772
    928471 9da3:B (1.51) BS01 A1BBD N/A N/A O43598 39818772
    928472 9da3:B (1.51) BS02 A1BBD N/A N/A O43598 39818772
    928473 9da4:A (1.73) BS01 A1BBE N/A N/A O43598 39818772
    928474 9da5:A (2.82) BS01 A1BBF N/A N/A O43598 39818772
    928475 9da5:A (2.82) BS02 A1BBF N/A N/A O43598 39818772
    928476 9da5:B (2.82) BS01 A1BBF N/A N/A O43598 39818772
    928477 9da5:B (2.82) BS02 A1BBF N/A N/A O43598 39818772
    928478 9da6:A (1.35) BS01 NR1 N/A N/A O43598 39818772
    928479 9da6:A (1.35) BS02 NR1 N/A N/A O43598 39818772
    928480 9da6:B (1.35) BS01 NR1 N/A N/A O43598 39818772
    928481 9da6:B (1.35) BS02 NR1 N/A N/A O43598 39818772
    928482 9da7:A (2.5) BS01 AG7 N/A N/A Q6REV3 39873493
    928483 9daj:A (2.5) BS01 AG7 N/A N/A K4L8Z7 39873493
    928484 9dak:A (2.4) BS01 ZN N/A N/A N/A 39922191
    928485 9dal:A (2.6) BS01 AG7 N/A N/A B2DD26 39873493
    928486 9dam:A (1.78) BS01 MG N/A N/A P41212 N/A
    928487 9dap:A (2.71) BS01 AG7 N/A N/A B2DD26 39873493
    928488 9db2:A (2.6) BS01 DTP N/A GO:0004748 ... P00452 39475643
    928489 9db2:A (2.6) BS02 ATP N/A GO:0004748 ... P00452 39475643
    928490 9db2:A (2.6) BS03 ATP N/A GO:0004748 ... P00452 39475643
    928491 9db2:A (2.6) BS04 DTP N/A GO:0004748 ... P00452 39475643
    928492 9db2:B (2.6) BS01 DTP N/A GO:0004748 ... P00452 39475643
    928493 9db2:B (2.6) BS02 ATP N/A GO:0004748 ... P00452 39475643
    928494 9db2:B (2.6) BS03 ATP N/A GO:0004748 ... P00452 39475643
    928495 9db2:B (2.6) BS04 DTP N/A GO:0004748 ... P00452 39475643
    928496 9db2:B (2.6) BS05 A1A3L N/A GO:0004748 ... P00452 39475643
    928497 9db2:C (2.6) BS01 FEO N/A GO:0004748 ... P69924 39475643
    928498 9db2:D (2.6) BS01 FEO N/A GO:0004748 ... P69924 39475643
    928499 9dbk:A (3.12) BS01 CLR N/A N/A Q9Y5Y9 39920100
    928500 9dbk:A (3.12) BS02 CLR N/A N/A Q9Y5Y9 39920100
    928501 9dbk:A (3.12) BS03 CLR N/A N/A Q9Y5Y9 39920100
    928502 9dbk:A (3.12) BS04 CLR N/A N/A Q9Y5Y9 39920100
    928503 9dbk:A (3.12) BS05 LPE N/A N/A Q9Y5Y9 39920100
    928504 9dbk:A (3.12) BS06 LPE N/A N/A Q9Y5Y9 39920100
    928505 9dbk:A (3.12) BS07 LPE N/A N/A Q9Y5Y9 39920100
    928506 9dbk:A (3.12) BS08 LPE N/A N/A Q9Y5Y9 39920100
    928507 9dbk:A (3.12) BS09 LPE N/A N/A Q9Y5Y9 39920100
    928508 9dbk:A (3.12) BS10 LPE N/A N/A Q9Y5Y9 39920100
    928509 9dbk:A (3.12) BS11 LPE N/A N/A Q9Y5Y9 39920100
    928510 9dbk:A (3.12) BS12 P5S N/A N/A Q9Y5Y9 39920100
    928511 9dbk:A (3.12) BS13 P5S N/A N/A Q9Y5Y9 39920100
    928512 9dbk:A (3.12) BS14 CLR N/A N/A Q9Y5Y9 39920100
    928513 9dbl:A (3.24) BS01 CLR N/A N/A Q9Y5Y9 39920100
    928514 9dbl:A (3.24) BS02 CLR N/A N/A Q9Y5Y9 39920100
    928515 9dbl:A (3.24) BS03 CLR N/A N/A Q9Y5Y9 39920100
    928516 9dbl:A (3.24) BS04 CLR N/A N/A Q9Y5Y9 39920100
    928517 9dbl:A (3.24) BS05 CLR N/A N/A Q9Y5Y9 39920100
    928518 9dbl:A (3.24) BS06 LPE N/A N/A Q9Y5Y9 39920100
    928519 9dbl:A (3.24) BS07 LPE N/A N/A Q9Y5Y9 39920100
    928520 9dbl:A (3.24) BS08 LPE N/A N/A Q9Y5Y9 39920100
    928521 9dbl:A (3.24) BS09 LPE N/A N/A Q9Y5Y9 39920100
    928522 9dbl:A (3.24) BS10 LPE N/A N/A Q9Y5Y9 39920100
    928523 9dbl:A (3.24) BS11 LPE N/A N/A Q9Y5Y9 39920100
    928524 9dbl:A (3.24) BS12 LPE N/A N/A Q9Y5Y9 39920100
    928525 9dbl:A (3.24) BS13 P5S N/A N/A Q9Y5Y9 39920100
    928526 9dbl:A (3.24) BS14 P5S N/A N/A Q9Y5Y9 39920100
    928527 9dbm:A (3.22) BS01 CLR N/A N/A Q9Y5Y9 39920100
    928528 9dbm:A (3.22) BS02 CLR N/A N/A Q9Y5Y9 39920100
    928529 9dbm:A (3.22) BS03 CLR N/A N/A Q9Y5Y9 39920100
    928530 9dbm:A (3.22) BS04 CLR N/A N/A Q9Y5Y9 39920100
    928531 9dbm:A (3.22) BS05 LPE N/A N/A Q9Y5Y9 39920100
    928532 9dbm:A (3.22) BS06 LPE N/A N/A Q9Y5Y9 39920100
    928533 9dbm:A (3.22) BS07 LPE N/A N/A Q9Y5Y9 39920100
    928534 9dbm:A (3.22) BS08 LPE N/A N/A Q9Y5Y9 39920100
    928535 9dbm:A (3.22) BS09 LPE N/A N/A Q9Y5Y9 39920100
    928536 9dbm:A (3.22) BS10 LPE N/A N/A Q9Y5Y9 39920100
    928537 9dbm:A (3.22) BS11 P5S N/A N/A Q9Y5Y9 39920100
    928538 9dbm:A (3.22) BS12 P5S N/A N/A Q9Y5Y9 39920100
    928539 9dbm:A (3.22) BS13 CLR N/A N/A Q9Y5Y9 39920100
    928540 9dbn:A (2.76) BS01 CLR N/A N/A Q9Y5Y9 39920100
    928541 9dbn:A (2.76) BS02 CLR N/A N/A Q9Y5Y9 39920100
    928542 9dbn:A (2.76) BS03 CLR N/A N/A Q9Y5Y9 39920100
    928543 9dbn:A (2.76) BS04 LPE N/A N/A Q9Y5Y9 39920100
    928544 9dbn:A (2.76) BS05 LPE N/A N/A Q9Y5Y9 39920100
    928545 9dbn:A (2.76) BS06 LPE N/A N/A Q9Y5Y9 39920100
    928546 9dbn:A (2.76) BS07 LPE N/A N/A Q9Y5Y9 39920100
    928547 9dbn:A (2.76) BS08 LPE N/A N/A Q9Y5Y9 39920100
    928548 9dbn:A (2.76) BS09 P5S N/A N/A Q9Y5Y9 39920100
    928549 9dbn:A (2.76) BS10 P5S N/A N/A Q9Y5Y9 39920100
    928550 9dbn:A (2.76) BS11 CLR N/A N/A Q9Y5Y9 39920100
    928551 9dbq:A (2.9) BS01 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928552 9dbq:A (2.9) BS02 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928553 9dbq:A (2.9) BS03 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928554 9dbq:A (2.9) BS04 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928555 9dbq:A (2.9) BS05 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928556 9dbq:A (2.9) BS06 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928557 9dbq:A (2.9) BS07 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928558 9dbq:A (2.9) BS08 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928559 9dbq:A (2.9) BS09 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928560 9dbq:B (2.9) BS01 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928561 9dbq:B (2.9) BS02 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928562 9dbq:B (2.9) BS03 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928563 9dbq:B (2.9) BS04 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928564 9dbq:B (2.9) BS05 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928565 9dbq:B (2.9) BS06 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928566 9dbq:B (2.9) BS07 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928567 9dbq:B (2.9) BS08 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928568 9dbq:B (2.9) BS09 Y01 N/A GO:0000139 ... Q9NP58 39557842
    928569 9dby:A (2.8) BS01 dna N/A GO:0000786 ... P84233 39537923
    928570 9dby:A (2.8) BS02 dna N/A GO:0000786 ... P84233 39537923
    928571 9dby:B (2.8) BS01 dna N/A GO:0000786 ... P62799 39537923
    928572 9dby:B (2.8) BS02 dna N/A GO:0000786 ... P62799 39537923
    928573 9dby:C (2.8) BS01 dna N/A GO:0000786 ... P06897 39537923
    928574 9dby:C (2.8) BS02 dna N/A GO:0000786 ... P06897 39537923
    928575 9dby:D (2.8) BS01 dna N/A GO:0000786 ... P02281 39537923
    928576 9dby:D (2.8) BS02 dna N/A GO:0000786 ... P02281 39537923
    928577 9dby:E (2.8) BS01 dna N/A GO:0000786 ... P84233 39537923
    928578 9dby:E (2.8) BS02 dna N/A GO:0000786 ... P84233 39537923
    928579 9dby:F (2.8) BS01 dna N/A GO:0000786 ... P62799 39537923
    928580 9dby:G (2.8) BS01 dna N/A GO:0000786 ... P06897 39537923
    928581 9dby:G (2.8) BS02 dna N/A GO:0000786 ... P06897 39537923
    928582 9dby:H (2.8) BS01 dna N/A GO:0000786 ... P02281 39537923
    928583 9dby:H (2.8) BS02 dna N/A GO:0000786 ... P02281 39537923
    928584 9dby:K (2.8) BS01 ZN N/A GO:0000122 ... P35226 39537923
    928585 9dby:K (2.8) BS02 ZN N/A GO:0000122 ... P35226 39537923
    928586 9dby:L (2.8) BS01 ZN N/A GO:0000122 ... Q99496 39537923
    928587 9dby:L (2.8) BS02 ZN N/A GO:0000122 ... Q99496 39537923
    928588 9dby:M (2.8) BS01 ZN N/A GO:0000122 ... Q8N488 39537923
    928589 9dc8:A (1.6) BS01 IMP N/A N/A P9WKI7 39536836
    928590 9dc8:A (1.6) BS02 VOA N/A N/A P9WKI7 39536836
    928591 9dc8:A (1.6) BS03 VOA N/A N/A P9WKI7 39536836
    928592 9dc9:A (1.6) BS01 IMP N/A N/A P9WKI7 39536836
    928593 9dc9:A (1.6) BS02 A1A3K N/A N/A P9WKI7 39536836
    928594 9dcb:1 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A
    928595 9dcb:2 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A
    928596 9dcb:3 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A
    928597 9dcb:4 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A
    928598 9dcb:5 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A
    928599 9dcb:6 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A
    928600 9dcb:7 (2.89) BS01 dna N/A N/A Q9YIJ1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).