SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    929001 9dfc:27 (2.5) BS01 rna N/A GO:0005840 ... P80340 39372947
    929002 9dfc:27 (2.5) BS02 MG N/A GO:0005840 ... P80340 39372947
    929003 9dfc:28 (2.5) BS01 rna N/A GO:0003735 ... Q5SKU1 39372947
    929004 9dfc:29 (2.5) BS01 rna N/A GO:0005737 ... Q5SHR2 39372947
    929005 9dfc:29 (2.5) BS02 ZN N/A GO:0005737 ... Q5SHR2 39372947
    929006 9dfc:2D (2.5) BS01 rna N/A GO:0002181 ... P60405 39372947
    929007 9dfc:2D (2.5) BS02 rna N/A GO:0002181 ... P60405 39372947
    929008 9dfc:2D (2.5) BS03 MG N/A GO:0002181 ... P60405 39372947
    929009 9dfc:2D (2.5) BS04 MG N/A GO:0002181 ... P60405 39372947
    929010 9dfc:2D (2.5) BS05 MG N/A GO:0002181 ... P60405 39372947
    929011 9dfc:2D (2.5) BS06 MG N/A GO:0002181 ... P60405 39372947
    929012 9dfc:2D (2.5) BS07 MG N/A GO:0002181 ... P60405 39372947
    929013 9dfc:2E (2.5) BS01 rna N/A GO:0003735 ... Q5SHN8 39372947
    929014 9dfc:2E (2.5) BS02 MG N/A GO:0003735 ... Q5SHN8 39372947
    929015 9dfc:2F (2.5) BS01 rna N/A GO:0003735 ... Q5SHN9 39372947
    929016 9dfc:2F (2.5) BS02 MG N/A GO:0003735 ... Q5SHN9 39372947
    929017 9dfc:2F (2.5) BS03 MG N/A GO:0003735 ... Q5SHN9 39372947
    929018 9dfc:2F (2.5) BS04 MG N/A GO:0003735 ... Q5SHN9 39372947
    929019 9dfc:2F (2.5) BS05 MG N/A GO:0003735 ... Q5SHN9 39372947
    929020 9dfc:2G (2.5) BS01 rna N/A GO:0000049 ... Q5SHQ0 39372947
    929021 9dfc:2G (2.5) BS02 rna N/A GO:0000049 ... Q5SHQ0 39372947
    929022 9dfc:2G (2.5) BS03 rna N/A GO:0000049 ... Q5SHQ0 39372947
    929023 9dfc:2G (2.5) BS04 MG N/A GO:0000049 ... Q5SHQ0 39372947
    929024 9dfc:2H (2.5) BS01 rna N/A GO:0002181 ... P0DOY8 39372947
    929025 9dfc:2I (2.5) BS01 rna N/A GO:0005840 ... Q5SLQ1 39372947
    929026 9dfc:2N (2.5) BS01 rna N/A GO:0003729 ... P60488 39372947
    929027 9dfc:2O (2.5) BS01 rna N/A GO:0003735 ... Q5SHP8 39372947
    929028 9dfc:2O (2.5) BS02 rna N/A GO:0003735 ... Q5SHP8 39372947
    929029 9dfc:2P (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ7 39372947
    929030 9dfc:2Q (2.5) BS01 rna N/A GO:0000049 ... P60489 39372947
    929031 9dfc:2Q (2.5) BS02 rna N/A GO:0000049 ... P60489 39372947
    929032 9dfc:2Q (2.5) BS03 rna N/A GO:0000049 ... P60489 39372947
    929033 9dfc:2Q (2.5) BS04 rna N/A GO:0000049 ... P60489 39372947
    929034 9dfc:2Q (2.5) BS05 MG N/A GO:0000049 ... P60489 39372947
    929035 9dfc:2Q (2.5) BS06 MG N/A GO:0000049 ... P60489 39372947
    929036 9dfc:2R (2.5) BS01 rna N/A GO:0003735 ... Q9Z9H5 39372947
    929037 9dfc:2S (2.5) BS01 rna N/A GO:0005737 ... Q5SHQ4 39372947
    929038 9dfc:2S (2.5) BS02 rna N/A GO:0005737 ... Q5SHQ4 39372947
    929039 9dfc:2T (2.5) BS01 rna N/A GO:0003735 ... P60490 39372947
    929040 9dfc:2T (2.5) BS02 rna N/A GO:0003735 ... P60490 39372947
    929041 9dfc:2T (2.5) BS03 MG N/A GO:0003735 ... P60490 39372947
    929042 9dfc:2U (2.5) BS01 rna N/A GO:0000027 ... P60491 39372947
    929043 9dfc:2U (2.5) BS02 MG N/A GO:0000027 ... P60491 39372947
    929044 9dfc:2V (2.5) BS01 rna N/A GO:0003735 ... P60492 39372947
    929045 9dfc:2V (2.5) BS02 MG N/A GO:0003735 ... P60492 39372947
    929046 9dfc:2W (2.5) BS01 rna N/A GO:0003735 ... Q5SHP3 39372947
    929047 9dfc:2W (2.5) BS02 MG N/A GO:0003735 ... Q5SHP3 39372947
    929048 9dfc:2W (2.5) BS03 MG N/A GO:0003735 ... Q5SHP3 39372947
    929049 9dfc:2X (2.5) BS01 rna N/A GO:0005840 ... Q5SHP0 39372947
    929050 9dfc:2X (2.5) BS02 MG N/A GO:0005840 ... Q5SHP0 39372947
    929051 9dfc:2Y (2.5) BS01 rna N/A GO:0005840 ... Q5SHP9 39372947
    929052 9dfc:2Y (2.5) BS02 ZN N/A GO:0005840 ... Q5SHP9 39372947
    929053 9dfc:2Z (2.5) BS01 rna N/A GO:0003723 ... Q5SHZ1 39372947
    929054 9dfc:2Z (2.5) BS02 rna N/A GO:0003723 ... Q5SHZ1 39372947
    929055 9dfc:2Z (2.5) BS03 MG N/A GO:0003723 ... Q5SHZ1 39372947
    929056 9dfc:2b (2.5) BS01 rna N/A GO:0003735 ... P80371 39372947
    929057 9dfc:2c (2.5) BS01 rna N/A GO:0003729 ... P80372 39372947
    929058 9dfc:2d (2.5) BS01 rna N/A GO:0003735 ... P80373 39372947
    929059 9dfc:2d (2.5) BS02 SF4 N/A GO:0003735 ... P80373 39372947
    929060 9dfc:2e (2.5) BS01 rna N/A GO:0005840 ... Q5SHQ5 39372947
    929061 9dfc:2e (2.5) BS02 MG N/A GO:0005840 ... Q5SHQ5 39372947
    929062 9dfc:2f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 39372947
    929063 9dfc:2f (2.5) BS02 MG N/A GO:0003735 ... Q5SLP8 39372947
    929064 9dfc:2g (2.5) BS01 rna N/A GO:0000049 ... P17291 39372947
    929065 9dfc:2g (2.5) BS02 rna N/A GO:0000049 ... P17291 39372947
    929066 9dfc:2h (2.5) BS01 rna N/A GO:0005840 ... P0DOY9 39372947
    929067 9dfc:2i (2.5) BS01 rna N/A GO:0000049 ... P80374 39372947
    929068 9dfc:2j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 39372947
    929069 9dfc:2k (2.5) BS01 rna N/A GO:0005840 ... P80376 39372947
    929070 9dfc:2k (2.5) BS02 MG N/A GO:0005840 ... P80376 39372947
    929071 9dfc:2l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 39372947
    929072 9dfc:2l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 39372947
    929073 9dfc:2m (2.5) BS01 rna N/A GO:0000049 ... P80377 39372947
    929074 9dfc:2m (2.5) BS02 rna N/A GO:0000049 ... P80377 39372947
    929075 9dfc:2m (2.5) BS03 rna N/A GO:0000049 ... P80377 39372947
    929076 9dfc:2n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 39372947
    929077 9dfc:2n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 39372947
    929078 9dfc:2o (2.5) BS01 rna N/A GO:0005737 ... Q5SJ76 39372947
    929079 9dfc:2o (2.5) BS02 rna N/A GO:0005737 ... Q5SJ76 39372947
    929080 9dfc:2p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 39372947
    929081 9dfc:2q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 39372947
    929082 9dfc:2q (2.5) BS02 MG N/A GO:0003735 ... P0DOY7 39372947
    929083 9dfc:2q (2.5) BS03 MG N/A GO:0003735 ... P0DOY7 39372947
    929084 9dfc:2r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 39372947
    929085 9dfc:2s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 39372947
    929086 9dfc:2t (2.5) BS01 rna N/A GO:0005840 ... P80380 39372947
    929087 9dfc:2t (2.5) BS02 MG N/A GO:0005840 ... P80380 39372947
    929088 9dfd:10 (2.6) BS01 rna N/A GO:0003735 ... P60493 39372947
    929089 9dfd:10 (2.6) BS02 rna N/A GO:0003735 ... P60493 39372947
    929090 9dfd:10 (2.6) BS03 rna N/A GO:0003735 ... P60493 39372947
    929091 9dfd:10 (2.6) BS04 MG N/A GO:0003735 ... P60493 39372947
    929092 9dfd:11 (2.6) BS01 rna N/A GO:0005840 ... P60494 39372947
    929093 9dfd:11 (2.6) BS02 rna N/A GO:0005840 ... P60494 39372947
    929094 9dfd:11 (2.6) BS03 MG N/A GO:0005840 ... P60494 39372947
    929095 9dfd:12 (2.6) BS01 rna N/A GO:0005840 ... Q5SHP6 39372947
    929096 9dfd:12 (2.6) BS02 MG N/A GO:0005840 ... Q5SHP6 39372947
    929097 9dfd:13 (2.6) BS01 rna N/A GO:0005840 ... Q5SHQ6 39372947
    929098 9dfd:13 (2.6) BS02 rna N/A GO:0005840 ... Q5SHQ6 39372947
    929099 9dfd:13 (2.6) BS03 MG N/A GO:0005840 ... Q5SHQ6 39372947
    929100 9dfd:13 (2.6) BS04 MG N/A GO:0005840 ... Q5SHQ6 39372947
    929101 9dfd:14 (2.6) BS01 rna N/A GO:0005840 ... Q5SJE1 39372947
    929102 9dfd:14 (2.6) BS02 ZN N/A GO:0005840 ... Q5SJE1 39372947
    929103 9dfd:15 (2.6) BS01 rna N/A GO:0005840 ... P80339 39372947
    929104 9dfd:15 (2.6) BS02 MG N/A GO:0005840 ... P80339 39372947
    929105 9dfd:15 (2.6) BS03 MG N/A GO:0005840 ... P80339 39372947
    929106 9dfd:15 (2.6) BS04 ZN N/A GO:0005840 ... P80339 39372947
    929107 9dfd:16 (2.6) BS01 rna N/A GO:0000049 ... P35871 39372947
    929108 9dfd:16 (2.6) BS02 MG N/A GO:0000049 ... P35871 39372947
    929109 9dfd:16 (2.6) BS03 ZN N/A GO:0000049 ... P35871 39372947
    929110 9dfd:17 (2.6) BS01 rna N/A GO:0005840 ... P80340 39372947
    929111 9dfd:17 (2.6) BS02 MG N/A GO:0005840 ... P80340 39372947
    929112 9dfd:18 (2.6) BS01 rna N/A GO:0003735 ... Q5SKU1 39372947
    929113 9dfd:18 (2.6) BS02 MG N/A GO:0003735 ... Q5SKU1 39372947
    929114 9dfd:18 (2.6) BS03 MG N/A GO:0003735 ... Q5SKU1 39372947
    929115 9dfd:18 (2.6) BS04 MG N/A GO:0003735 ... Q5SKU1 39372947
    929116 9dfd:19 (2.6) BS01 rna N/A GO:0005737 ... Q5SHR2 39372947
    929117 9dfd:19 (2.6) BS02 ZN N/A GO:0005737 ... Q5SHR2 39372947
    929118 9dfd:1D (2.6) BS01 rna N/A GO:0002181 ... P60405 39372947
    929119 9dfd:1D (2.6) BS02 rna N/A GO:0002181 ... P60405 39372947
    929120 9dfd:1D (2.6) BS03 MG N/A GO:0002181 ... P60405 39372947
    929121 9dfd:1D (2.6) BS04 MG N/A GO:0002181 ... P60405 39372947
    929122 9dfd:1D (2.6) BS05 MG N/A GO:0002181 ... P60405 39372947
    929123 9dfd:1D (2.6) BS06 MG N/A GO:0002181 ... P60405 39372947
    929124 9dfd:1D (2.6) BS07 MG N/A GO:0002181 ... P60405 39372947
    929125 9dfd:1D (2.6) BS08 MG N/A GO:0002181 ... P60405 39372947
    929126 9dfd:1D (2.6) BS09 MG N/A GO:0002181 ... P60405 39372947
    929127 9dfd:1D (2.6) BS10 MG N/A GO:0002181 ... P60405 39372947
    929128 9dfd:1D (2.6) BS11 MG N/A GO:0002181 ... P60405 39372947
    929129 9dfd:1D (2.6) BS12 MG N/A GO:0002181 ... P60405 39372947
    929130 9dfd:1D (2.6) BS13 MG N/A GO:0002181 ... P60405 39372947
    929131 9dfd:1E (2.6) BS01 rna N/A GO:0003735 ... Q5SHN8 39372947
    929132 9dfd:1E (2.6) BS02 MG N/A GO:0003735 ... Q5SHN8 39372947
    929133 9dfd:1E (2.6) BS03 MG N/A GO:0003735 ... Q5SHN8 39372947
    929134 9dfd:1E (2.6) BS04 MG N/A GO:0003735 ... Q5SHN8 39372947
    929135 9dfd:1E (2.6) BS05 MG N/A GO:0003735 ... Q5SHN8 39372947
    929136 9dfd:1E (2.6) BS06 MG N/A GO:0003735 ... Q5SHN8 39372947
    929137 9dfd:1E (2.6) BS07 MG N/A GO:0003735 ... Q5SHN8 39372947
    929138 9dfd:1F (2.6) BS01 rna N/A GO:0003735 ... Q5SHN9 39372947
    929139 9dfd:1F (2.6) BS02 MG N/A GO:0003735 ... Q5SHN9 39372947
    929140 9dfd:1F (2.6) BS03 MG N/A GO:0003735 ... Q5SHN9 39372947
    929141 9dfd:1F (2.6) BS04 MG N/A GO:0003735 ... Q5SHN9 39372947
    929142 9dfd:1F (2.6) BS05 MG N/A GO:0003735 ... Q5SHN9 39372947
    929143 9dfd:1F (2.6) BS06 MG N/A GO:0003735 ... Q5SHN9 39372947
    929144 9dfd:1F (2.6) BS07 MG N/A GO:0003735 ... Q5SHN9 39372947
    929145 9dfd:1F (2.6) BS08 MG N/A GO:0003735 ... Q5SHN9 39372947
    929146 9dfd:1F (2.6) BS09 MG N/A GO:0003735 ... Q5SHN9 39372947
    929147 9dfd:1F (2.6) BS10 MG N/A GO:0003735 ... Q5SHN9 39372947
    929148 9dfd:1F (2.6) BS11 MG N/A GO:0003735 ... Q5SHN9 39372947
    929149 9dfd:1G (2.6) BS01 rna N/A GO:0000049 ... Q5SHQ0 39372947
    929150 9dfd:1G (2.6) BS02 rna N/A GO:0000049 ... Q5SHQ0 39372947
    929151 9dfd:1G (2.6) BS03 rna N/A GO:0000049 ... Q5SHQ0 39372947
    929152 9dfd:1G (2.6) BS04 MG N/A GO:0000049 ... Q5SHQ0 39372947
    929153 9dfd:1H (2.6) BS01 rna N/A GO:0002181 ... P0DOY8 39372947
    929154 9dfd:1I (2.6) BS01 rna N/A GO:0005840 ... Q5SLQ1 39372947
    929155 9dfd:1I (2.6) BS02 MG N/A GO:0005840 ... Q5SLQ1 39372947
    929156 9dfd:1N (2.6) BS01 rna N/A GO:0003729 ... P60488 39372947
    929157 9dfd:1N (2.6) BS02 MG N/A GO:0003729 ... P60488 39372947
    929158 9dfd:1N (2.6) BS03 MG N/A GO:0003729 ... P60488 39372947
    929159 9dfd:1N (2.6) BS04 MG N/A GO:0003729 ... P60488 39372947
    929160 9dfd:1O (2.6) BS01 rna N/A GO:0003735 ... Q5SHP8 39372947
    929161 9dfd:1O (2.6) BS02 rna N/A GO:0003735 ... Q5SHP8 39372947
    929162 9dfd:1O (2.6) BS03 MG N/A GO:0003735 ... Q5SHP8 39372947
    929163 9dfd:1O (2.6) BS04 MG N/A GO:0003735 ... Q5SHP8 39372947
    929164 9dfd:1P (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ7 39372947
    929165 9dfd:1P (2.6) BS02 MG N/A GO:0003735 ... Q5SHQ7 39372947
    929166 9dfd:1P (2.6) BS03 MG N/A GO:0003735 ... Q5SHQ7 39372947
    929167 9dfd:1P (2.6) BS04 MG N/A GO:0003735 ... Q5SHQ7 39372947
    929168 9dfd:1P (2.6) BS05 MG N/A GO:0003735 ... Q5SHQ7 39372947
    929169 9dfd:1P (2.6) BS06 MG N/A GO:0003735 ... Q5SHQ7 39372947
    929170 9dfd:1Q (2.6) BS01 rna N/A GO:0000049 ... P60489 39372947
    929171 9dfd:1Q (2.6) BS02 rna N/A GO:0000049 ... P60489 39372947
    929172 9dfd:1Q (2.6) BS03 rna N/A GO:0000049 ... P60489 39372947
    929173 9dfd:1Q (2.6) BS04 rna N/A GO:0000049 ... P60489 39372947
    929174 9dfd:1Q (2.6) BS05 MG N/A GO:0000049 ... P60489 39372947
    929175 9dfd:1Q (2.6) BS06 MG N/A GO:0000049 ... P60489 39372947
    929176 9dfd:1Q (2.6) BS07 MG N/A GO:0000049 ... P60489 39372947
    929177 9dfd:1Q (2.6) BS08 MG N/A GO:0000049 ... P60489 39372947
    929178 9dfd:1Q (2.6) BS09 MG N/A GO:0000049 ... P60489 39372947
    929179 9dfd:1R (2.6) BS01 rna N/A GO:0003735 ... Q9Z9H5 39372947
    929180 9dfd:1R (2.6) BS02 MG N/A GO:0003735 ... Q9Z9H5 39372947
    929181 9dfd:1R (2.6) BS03 MG N/A GO:0003735 ... Q9Z9H5 39372947
    929182 9dfd:1S (2.6) BS01 rna N/A GO:0005737 ... Q5SHQ4 39372947
    929183 9dfd:1S (2.6) BS02 rna N/A GO:0005737 ... Q5SHQ4 39372947
    929184 9dfd:1S (2.6) BS03 MG N/A GO:0005737 ... Q5SHQ4 39372947
    929185 9dfd:1S (2.6) BS04 MG N/A GO:0005737 ... Q5SHQ4 39372947
    929186 9dfd:1T (2.6) BS01 rna N/A GO:0003735 ... P60490 39372947
    929187 9dfd:1T (2.6) BS02 rna N/A GO:0003735 ... P60490 39372947
    929188 9dfd:1U (2.6) BS01 rna N/A GO:0000027 ... P60491 39372947
    929189 9dfd:1U (2.6) BS02 MG N/A GO:0000027 ... P60491 39372947
    929190 9dfd:1U (2.6) BS03 MG N/A GO:0000027 ... P60491 39372947
    929191 9dfd:1U (2.6) BS04 MG N/A GO:0000027 ... P60491 39372947
    929192 9dfd:1U (2.6) BS05 MG N/A GO:0000027 ... P60491 39372947
    929193 9dfd:1U (2.6) BS06 MG N/A GO:0000027 ... P60491 39372947
    929194 9dfd:1U (2.6) BS07 MG N/A GO:0000027 ... P60491 39372947
    929195 9dfd:1U (2.6) BS08 MG N/A GO:0000027 ... P60491 39372947
    929196 9dfd:1U (2.6) BS09 MG N/A GO:0000027 ... P60491 39372947
    929197 9dfd:1V (2.6) BS01 rna N/A GO:0003735 ... P60492 39372947
    929198 9dfd:1V (2.6) BS02 MG N/A GO:0003735 ... P60492 39372947
    929199 9dfd:1V (2.6) BS03 MG N/A GO:0003735 ... P60492 39372947
    929200 9dfd:1V (2.6) BS04 MG N/A GO:0003735 ... P60492 39372947

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).