SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    929601 9dfn:A (1.5) BS01 SF4 N/A N/A G9N0G3 N/A
    929602 9dfn:A (1.5) BS02 SAM N/A N/A G9N0G3 N/A
    929603 9dfn:A (1.5) BS03 CTP N/A N/A G9N0G3 N/A
    929604 9dfu:A (2.3) BS01 CTP N/A N/A G9N0G3 N/A
    929605 9dfu:A (2.3) BS02 SF4 N/A N/A G9N0G3 N/A
    929606 9dfu:A (2.3) BS03 SAM N/A N/A G9N0G3 N/A
    929607 9dfw:A (1.677) BS01 SF4 N/A N/A G9MQB8 N/A
    929608 9dfw:A (1.677) BS02 SAM N/A N/A G9MQB8 N/A
    929609 9dfw:A (1.677) BS03 CTP N/A N/A G9MQB8 N/A
    929610 9dfw:A (1.677) BS04 MG N/A N/A G9MQB8 N/A
    929611 9dfw:A (1.677) BS05 MG N/A N/A G9MQB8 N/A
    929612 9dfw:B (1.677) BS01 SF4 N/A N/A G9MQB8 N/A
    929613 9dfw:B (1.677) BS02 SAM N/A N/A G9MQB8 N/A
    929614 9dfw:B (1.677) BS03 CTP N/A N/A G9MQB8 N/A
    929615 9dfw:C (1.677) BS01 SF4 N/A N/A G9MQB8 N/A
    929616 9dfw:C (1.677) BS02 SAM N/A N/A G9MQB8 N/A
    929617 9dfw:C (1.677) BS03 CTP N/A N/A G9MQB8 N/A
    929618 9dfw:C (1.677) BS04 MG N/A N/A G9MQB8 N/A
    929619 9dfx:A (4.1) BS01 ATP N/A N/A P70673 N/A
    929620 9dfx:B (4.1) BS01 ATP N/A N/A P70673 N/A
    929621 9dfx:C (4.1) BS01 ATP N/A N/A P70673 N/A
    929622 9dfx:D (4.1) BS01 ATP N/A N/A P70673 N/A
    929623 9dfx:E (4.1) BS01 ATP N/A N/A A0A1S4NYG1 N/A
    929624 9dfx:E (4.1) BS02 A1A4F N/A N/A A0A1S4NYG1 N/A
    929625 9dg1:A (5.2) BS01 dna N/A N/A Q8ILY1 39490679
    929626 9dg3:A (3.46) BS01 dna N/A GO:0000786 ... P84233 39537923
    929627 9dg3:A (3.46) BS02 dna N/A GO:0000786 ... P84233 39537923
    929628 9dg3:B (3.46) BS01 dna N/A GO:0000786 ... P62799 39537923
    929629 9dg3:B (3.46) BS02 dna N/A GO:0000786 ... P62799 39537923
    929630 9dg3:C (3.46) BS01 dna N/A GO:0000786 ... P06897 39537923
    929631 9dg3:C (3.46) BS02 dna N/A GO:0000786 ... P06897 39537923
    929632 9dg3:D (3.46) BS01 dna N/A GO:0000786 ... P02281 39537923
    929633 9dg3:D (3.46) BS02 dna N/A GO:0000786 ... P02281 39537923
    929634 9dg3:E (3.46) BS01 dna N/A GO:0000786 ... P84233 39537923
    929635 9dg3:E (3.46) BS02 dna N/A GO:0000786 ... P84233 39537923
    929636 9dg3:F (3.46) BS01 dna N/A GO:0000786 ... P62799 39537923
    929637 9dg3:F (3.46) BS02 dna N/A GO:0000786 ... P62799 39537923
    929638 9dg3:G (3.46) BS01 dna N/A GO:0000786 ... P06897 39537923
    929639 9dg3:G (3.46) BS02 dna N/A GO:0000786 ... P06897 39537923
    929640 9dg3:H (3.46) BS01 dna N/A GO:0000786 ... P02281 39537923
    929641 9dg3:H (3.46) BS02 dna N/A GO:0000786 ... P02281 39537923
    929642 9dg3:M (3.46) BS01 ZN N/A GO:0000122 ... Q8N488 39537923
    929643 9dgg:A (2.98) BS01 dna N/A GO:0000786 ... P84233 39537923
    929644 9dgg:A (2.98) BS02 dna N/A GO:0000786 ... P84233 39537923
    929645 9dgg:B (2.98) BS01 dna N/A GO:0000786 ... P62799 39537923
    929646 9dgg:B (2.98) BS02 dna N/A GO:0000786 ... P62799 39537923
    929647 9dgg:C (2.98) BS01 dna N/A GO:0000786 ... P06897 39537923
    929648 9dgg:C (2.98) BS02 dna N/A GO:0000786 ... P06897 39537923
    929649 9dgg:D (2.98) BS01 dna N/A GO:0000786 ... P02281 39537923
    929650 9dgg:D (2.98) BS02 dna N/A GO:0000786 ... P02281 39537923
    929651 9dgg:E (2.98) BS01 dna N/A GO:0000786 ... P84233 39537923
    929652 9dgg:E (2.98) BS02 dna N/A GO:0000786 ... P84233 39537923
    929653 9dgg:F (2.98) BS01 dna N/A GO:0000786 ... P62799 39537923
    929654 9dgg:F (2.98) BS02 dna N/A GO:0000786 ... P62799 39537923
    929655 9dgg:G (2.98) BS01 dna N/A GO:0000786 ... P06897 39537923
    929656 9dgg:G (2.98) BS02 dna N/A GO:0000786 ... P06897 39537923
    929657 9dgg:H (2.98) BS01 dna N/A GO:0000786 ... P02281 39537923
    929658 9dgg:H (2.98) BS02 dna N/A GO:0000786 ... P02281 39537923
    929659 9dgg:K (2.98) BS01 ZN N/A GO:0000122 ... P35226 39537923
    929660 9dgg:K (2.98) BS02 ZN N/A GO:0000122 ... P35226 39537923
    929661 9dgg:L (2.98) BS01 ZN N/A GO:0000122 ... Q99496 39537923
    929662 9dgg:L (2.98) BS02 ZN N/A GO:0000122 ... Q99496 39537923
    929663 9dgw:A (1.72) BS01 CTP N/A N/A G9MQB8 N/A
    929664 9dgw:A (1.72) BS02 SF4 N/A N/A G9MQB8 N/A
    929665 9dgw:A (1.72) BS03 SAM N/A N/A G9MQB8 N/A
    929666 9dgw:B (1.72) BS01 SF4 N/A N/A G9MQB8 N/A
    929667 9dgw:B (1.72) BS02 SAM N/A N/A G9MQB8 N/A
    929668 9dgw:B (1.72) BS03 CTP N/A N/A G9MQB8 N/A
    929669 9dgw:C (1.72) BS01 SAM N/A N/A G9MQB8 N/A
    929670 9dgw:C (1.72) BS02 CTP N/A N/A G9MQB8 N/A
    929671 9dgw:C (1.72) BS03 SF4 N/A N/A G9MQB8 N/A
    929672 9dh3:A (3.76) BS01 ADP N/A N/A P0AEX9
    Q96P20
    39653810
    929673 9dh3:A (3.76) BS02 A1A4L N/A N/A P0AEX9
    Q96P20
    39653810
    929674 9dh3:B (3.76) BS01 ADP N/A N/A P0AEX9
    Q96P20
    39653810
    929675 9dh3:B (3.76) BS02 A1A4L N/A N/A P0AEX9
    Q96P20
    39653810
    929676 9dh3:C (3.76) BS01 ADP N/A N/A P0AEX9
    Q96P20
    39653810
    929677 9dh3:C (3.76) BS02 A1A4L N/A N/A P0AEX9
    Q96P20
    39653810
    929678 9dh3:D (3.76) BS01 ADP N/A N/A P0AEX9
    Q96P20
    39653810
    929679 9dh3:D (3.76) BS02 A1A4L N/A N/A P0AEX9
    Q96P20
    39653810
    929680 9dhg:A (1.386) BS01 FMN N/A GO:0004151 ... Q02127 39284456
    929681 9dhg:A (1.386) BS02 A1A4P N/A GO:0004151 ... Q02127 39284456
    929682 9dhh:A (1.49) BS01 FMN N/A GO:0004151 ... Q02127 39284456
    929683 9dhh:A (1.49) BS02 A1A4O N/A GO:0004151 ... Q02127 39284456
    929684 9dhi:A (1.38) BS01 FMN N/A GO:0004151 ... Q02127 39284456
    929685 9dhi:A (1.38) BS02 A1A4N N/A GO:0004151 ... Q02127 39284456
    929686 9dhj:A (1.4) BS01 FMN N/A GO:0004151 ... Q02127 39284456
    929687 9dhj:A (1.4) BS02 A1A4M N/A GO:0004151 ... Q02127 39284456
    929688 9dhl:A (1.88) BS01 A1AU5 N/A N/A P00811 39753705
    929689 9dhl:B (1.88) BS01 A1AU5 N/A N/A P00811 39753705
    929690 9di6:A (2.41) BS01 A1A51 N/A N/A Q08210 39710971
    929691 9di6:A (2.41) BS02 FMN N/A N/A Q08210 39710971
    929692 9di6:A (2.41) BS03 OG6 N/A N/A Q08210 39710971
    929693 9di9:A (2.155) BS01 ADP N/A GO:0004672 ... O14874 39560668
    929694 9di9:A (2.155) BS02 A1A40 N/A GO:0004672 ... O14874 39560668
    929695 9dik:A (2.1) BS01 A1A52 N/A N/A Q08210 39710971
    929696 9dik:A (2.1) BS02 FMN N/A N/A Q08210 39710971
    929697 9dik:A (2.1) BS03 OG6 N/A N/A Q08210 39710971
    929698 9dik:B (2.1) BS01 A1A52 N/A N/A Q08210 39710971
    929699 9dik:B (2.1) BS02 FMN N/A N/A Q08210 39710971
    929700 9dik:B (2.1) BS03 OG6 N/A N/A Q08210 39710971
    929701 9dio:A (2.7) BS01 SIA N/A N/A A0A8E4ZAK5 39636969
    929702 9dio:E (2.7) BS01 GAL N/A N/A A0A8E4ZAK5 39636969
    929703 9dio:E (2.7) BS02 SIA N/A N/A A0A8E4ZAK5 39636969
    929704 9dio:G (2.7) BS01 SIA N/A N/A A0A8E4ZAK5 39636969
    929705 9dio:I (2.7) BS01 SIA N/A N/A A0A8E4ZAK5 39636969
    929706 9dio:I (2.7) BS02 BMA N/A N/A A0A8E4ZAK5 39636969
    929707 9dio:O (2.7) BS01 SIA N/A N/A A0A8E4ZAK5 39636969
    929708 9dio:Q (2.7) BS01 SIA N/A N/A A0A8E4ZAK5 39636969
    929709 9dip:A (2.32) BS01 SIA N/A N/A A0A869KY97 39636969
    929710 9dip:C (2.32) BS01 SIA N/A N/A A0A869KY97 39636969
    929711 9dip:I (2.32) BS01 SIA N/A N/A A0A869KY97 39636969
    929712 9diz:A (3.1) BS01 A1A53 N/A N/A Q08210 39710971
    929713 9diz:A (3.1) BS02 FMN N/A N/A Q08210 39710971
    929714 9diz:A (3.1) BS03 OG6 N/A N/A Q08210 39710971
    929715 9djt:A (2.95) BS01 peptide N/A N/A Q96SW2 39541509
    929716 9djt:A (2.95) BS02 ZN N/A N/A Q96SW2 39541509
    929717 9djt:A (2.95) BS03 A1A5H N/A N/A Q96SW2 39541509
    929718 9djt:D (2.95) BS01 peptide N/A N/A Q96SW2 39541509
    929719 9djt:D (2.95) BS02 ZN N/A N/A Q96SW2 39541509
    929720 9djt:D (2.95) BS03 A1A5H N/A N/A Q96SW2 39541509
    929721 9djx:A (3.35) BS01 peptide N/A N/A Q96SW2 39541509
    929722 9djx:A (3.35) BS02 ZN N/A N/A Q96SW2 39541509
    929723 9djx:A (3.35) BS03 A1A5I N/A N/A Q96SW2 39541509
    929724 9djx:D (3.35) BS01 peptide N/A N/A Q96SW2 39541509
    929725 9djx:D (3.35) BS02 ZN N/A N/A Q96SW2 39541509
    929726 9djx:D (3.35) BS03 A1A5I N/A N/A Q96SW2 39541509
    929727 9dk2:A (2.5) BS01 ATP N/A N/A A0AAX3ZKT3 39586055
    929728 9dk2:A (2.5) BS02 MG N/A N/A A0AAX3ZKT3 39586055
    929729 9dk3:A (2.3) BS01 ADP N/A N/A A0AAX3ZKT3 39586055
    929730 9dk3:A (2.3) BS02 MG N/A N/A A0AAX3ZKT3 39586055
    929731 9dk3:A (2.3) BS03 MG N/A N/A A0AAX3ZKT3 39586055
    929732 9dko:A (3.0) BS01 A1A5P N/A N/A Q08210 39710971
    929733 9dko:A (3.0) BS02 FMN N/A N/A Q08210 39710971
    929734 9dko:A (3.0) BS03 OG6 N/A N/A Q08210 39710971
    929735 9dkq:A (3.15) BS01 A1A5Q N/A N/A Q08210 39710971
    929736 9dkq:A (3.15) BS02 FMN N/A N/A Q08210 39710971
    929737 9dkq:A (3.15) BS03 OG6 N/A N/A Q08210 39710971
    929738 9dky:A (3.3) BS01 A1A59 N/A N/A Q08210 39710971
    929739 9dky:A (3.3) BS02 FMN N/A N/A Q08210 39710971
    929740 9dky:A (3.3) BS03 OG6 N/A N/A Q08210 39710971
    929741 9dl1:A (2.3) BS01 peptide N/A N/A N/A 39672954
    929742 9dl1:A (2.3) BS02 peptide N/A N/A N/A 39672954
    929743 9dl1:B (2.3) BS01 peptide N/A N/A A0A5B8RNS7 39672954
    929744 9dl1:D (2.3) BS01 peptide N/A N/A N/A 39672954
    929745 9dl1:D (2.3) BS02 peptide N/A N/A N/A 39672954
    929746 9dl1:F (2.3) BS01 peptide N/A N/A A0A5B8RNS7 39672954
    929747 9dl2:A (1.55) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929748 9dl2:A (1.55) BS02 53E N/A GO:0000166 ... F7X6I3 39598797
    929749 9dl2:A (1.55) BS03 NAD N/A GO:0000166 ... F7X6I3 39598797
    929750 9dl2:B (1.55) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929751 9dl2:B (1.55) BS02 53E N/A GO:0000166 ... F7X6I3 39598797
    929752 9dl2:B (1.55) BS03 NAD N/A GO:0000166 ... F7X6I3 39598797
    929753 9dl3:A (1.77) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929754 9dl3:A (1.77) BS02 QNC N/A GO:0000166 ... F7X6I3 39598797
    929755 9dl3:A (1.77) BS03 QNC N/A GO:0000166 ... F7X6I3 39598797
    929756 9dl3:B (1.77) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929757 9dl3:B (1.77) BS02 QNC N/A GO:0000166 ... F7X6I3 39598797
    929758 9dl3:B (1.77) BS03 QNC N/A GO:0000166 ... F7X6I3 39598797
    929759 9dl4:A (1.8) BS01 PYS N/A GO:0000166 ... F7X6I3 39598797
    929760 9dl4:A (1.8) BS02 FAD N/A GO:0000166 ... F7X6I3 39598797
    929761 9dl4:B (1.8) BS01 PYS N/A GO:0000166 ... F7X6I3 39598797
    929762 9dl4:B (1.8) BS02 FAD N/A GO:0000166 ... F7X6I3 39598797
    929763 9dl5:A (1.77) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929764 9dl5:A (1.77) BS02 A1BDA N/A GO:0000166 ... F7X6I3 39598797
    929765 9dl5:B (1.77) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929766 9dl6:A (1.42) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929767 9dl6:A (1.42) BS02 A1BDB N/A GO:0000166 ... F7X6I3 39598797
    929768 9dl6:A (1.42) BS03 ID7 N/A GO:0000166 ... F7X6I3 39598797
    929769 9dl6:A (1.42) BS04 NAD N/A GO:0000166 ... F7X6I3 39598797
    929770 9dl6:B (1.42) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929771 9dl6:B (1.42) BS02 A1BDB N/A GO:0000166 ... F7X6I3 39598797
    929772 9dl6:B (1.42) BS03 ID7 N/A GO:0000166 ... F7X6I3 39598797
    929773 9dl6:B (1.42) BS04 NAD N/A GO:0000166 ... F7X6I3 39598797
    929774 9dl7:A (1.72) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929775 9dl7:A (1.72) BS02 8P4 N/A GO:0000166 ... F7X6I3 39598797
    929776 9dl7:B (1.72) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929777 9dl7:B (1.72) BS02 8P4 N/A GO:0000166 ... F7X6I3 39598797
    929778 9dl8:A (1.64) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929779 9dl8:A (1.64) BS02 A1BDD N/A GO:0000166 ... F7X6I3 39598797
    929780 9dl8:A (1.64) BS03 NAD N/A GO:0000166 ... F7X6I3 39598797
    929781 9dl8:B (1.64) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929782 9dl8:B (1.64) BS02 A1BDD N/A GO:0000166 ... F7X6I3 39598797
    929783 9dl8:B (1.64) BS03 NAD N/A GO:0000166 ... F7X6I3 39598797
    929784 9dl9:A (1.32) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929785 9dl9:A (1.32) BS02 A1BDD N/A GO:0000166 ... F7X6I3 39598797
    929786 9dl9:A (1.32) BS03 NAD N/A GO:0000166 ... F7X6I3 39598797
    929787 9dl9:B (1.32) BS01 FAD N/A GO:0000166 ... F7X6I3 39598797
    929788 9dl9:B (1.32) BS02 A1BDD N/A GO:0000166 ... F7X6I3 39598797
    929789 9dl9:B (1.32) BS03 A1BDD N/A GO:0000166 ... F7X6I3 39598797
    929790 9dl9:B (1.32) BS04 NAD N/A GO:0000166 ... F7X6I3 39598797
    929791 9dlk:A (2.9) BS01 A1A6D N/A N/A Q08210 39710971
    929792 9dlk:A (2.9) BS02 FMN N/A N/A Q08210 39710971
    929793 9dlk:A (2.9) BS03 OG6 N/A N/A Q08210 39710971
    929794 9dlw:A (2.07) BS01 A1BAF N/A GO:0000122 ... P61964 39580491
    929795 9dlw:B (2.07) BS01 A1BAF N/A N/A Q9Y4B6 39580491
    929796 9dlx:A (2.91) BS01 ATP N/A N/A P61157 N/A
    929797 9dlx:B (2.91) BS01 ATP N/A N/A A7MB62 N/A
    929798 9dly:A (3.1) BS01 A1A6E N/A N/A Q08210 39710971
    929799 9dly:A (3.1) BS02 FMN N/A N/A Q08210 39710971
    929800 9dly:A (3.1) BS03 OG6 N/A N/A Q08210 39710971

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).