SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    929601 8z97:B (2.65) BS02 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    929602 8z97:B (2.65) BS03 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    929603 8z97:B (2.65) BS04 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    929604 8z97:B (2.65) BS05 V9G 2.7.7.48 GO:0000166 ... O41353 38816392
    929605 8z97:C (2.65) BS01 rna ? GO:0006370 ... Q9YNA4 38816392
    929606 8z97:C (2.65) BS02 rna ? GO:0006370 ... Q9YNA4 38816392
    929607 8z97:C (2.65) BS03 V9G ? GO:0006370 ... Q9YNA4 38816392
    929608 8z98:A (2.52) BS01 rna ? GO:0003723 ... P27194 38816392
    929609 8z98:A (2.52) BS02 V9G ? GO:0003723 ... P27194 38816392
    929610 8z98:B (2.52) BS01 rna 2.7.7.48 GO:0000166 ... O41353 38816392
    929611 8z99:A (3.2) BS01 rna N/A N/A N/A 39143216
    929612 8z99:A (3.2) BS02 ZN N/A N/A N/A 39143216
    929613 8z99:B (3.2) BS01 rna N/A N/A N/A 39143216
    929614 8z99:B (3.2) BS02 rna N/A N/A N/A 39143216
    929615 8z99:B (3.2) BS03 ZN N/A N/A N/A 39143216
    929616 8z99:C (3.2) BS01 rna N/A N/A N/A 39143216
    929617 8z99:C (3.2) BS02 rna N/A N/A N/A 39143216
    929618 8z99:C (3.2) BS03 ZN N/A N/A N/A 39143216
    929619 8z99:D (3.2) BS01 rna N/A N/A N/A 39143216
    929620 8z99:D (3.2) BS02 rna N/A N/A N/A 39143216
    929621 8z99:D (3.2) BS03 ZN N/A N/A N/A 39143216
    929622 8z99:E (3.2) BS01 rna N/A N/A N/A 39143216
    929623 8z99:E (3.2) BS02 rna N/A N/A N/A 39143216
    929624 8z99:E (3.2) BS03 ZN N/A N/A N/A 39143216
    929625 8z99:F (3.2) BS01 rna N/A N/A N/A 39143216
    929626 8z99:F (3.2) BS02 rna N/A N/A N/A 39143216
    929627 8z99:F (3.2) BS03 ZN N/A N/A N/A 39143216
    929628 8z99:G (3.2) BS01 rna N/A N/A N/A 39143216
    929629 8z99:H (3.2) BS01 rna N/A N/A N/A 39143216
    929630 8z99:H (3.2) BS02 ZN N/A N/A N/A 39143216
    929631 8z99:I (3.2) BS01 rna N/A N/A N/A 39143216
    929632 8z99:J (3.2) BS01 rna N/A N/A N/A 39143216
    929633 8z99:J (3.2) BS02 rna N/A N/A N/A 39143216
    929634 8z99:J (3.2) BS03 ZN N/A N/A N/A 39143216
    929635 8z99:K (3.2) BS01 rna N/A N/A N/A 39143216
    929636 8z99:L (3.2) BS01 rna N/A N/A N/A 39143216
    929637 8z99:P (3.2) BS01 rna N/A N/A N/A 39143216
    929638 8z99:P (3.2) BS02 rna N/A N/A N/A 39143216
    929639 8z99:P (3.2) BS03 ZN N/A N/A N/A 39143216
    929640 8z9a:D (3.0) BS01 SOU N/A GO:0004984 ... A0A1S6J146 38870272
    929641 8z9c:A (3.01) BS01 rna N/A N/A N/A 39143216
    929642 8z9c:A (3.01) BS02 rna N/A N/A N/A 39143216
    929643 8z9c:A (3.01) BS03 ZN N/A N/A N/A 39143216
    929644 8z9c:B (3.01) BS01 rna N/A N/A N/A 39143216
    929645 8z9c:B (3.01) BS02 rna N/A N/A N/A 39143216
    929646 8z9c:B (3.01) BS03 ZN N/A N/A N/A 39143216
    929647 8z9c:C (3.01) BS01 rna N/A N/A N/A 39143216
    929648 8z9c:C (3.01) BS02 rna N/A N/A N/A 39143216
    929649 8z9c:C (3.01) BS03 ZN N/A N/A N/A 39143216
    929650 8z9c:D (3.01) BS01 rna N/A N/A N/A 39143216
    929651 8z9c:D (3.01) BS02 rna N/A N/A N/A 39143216
    929652 8z9c:D (3.01) BS03 ZN N/A N/A N/A 39143216
    929653 8z9c:E (3.01) BS01 rna N/A N/A N/A 39143216
    929654 8z9c:E (3.01) BS02 rna N/A N/A N/A 39143216
    929655 8z9c:E (3.01) BS03 ZN N/A N/A N/A 39143216
    929656 8z9c:F (3.01) BS01 rna N/A N/A N/A 39143216
    929657 8z9c:F (3.01) BS02 rna N/A N/A N/A 39143216
    929658 8z9c:F (3.01) BS03 ZN N/A N/A N/A 39143216
    929659 8z9c:G (3.01) BS01 rna N/A N/A N/A 39143216
    929660 8z9c:G (3.01) BS02 ZN N/A N/A N/A 39143216
    929661 8z9c:H (3.01) BS01 rna N/A N/A N/A 39143216
    929662 8z9c:H (3.01) BS02 ZN N/A N/A N/A 39143216
    929663 8z9c:I (3.01) BS01 rna N/A N/A N/A 39143216
    929664 8z9c:J (3.01) BS01 rna N/A N/A N/A 39143216
    929665 8z9c:J (3.01) BS02 rna N/A N/A N/A 39143216
    929666 8z9c:J (3.01) BS03 ZN N/A N/A N/A 39143216
    929667 8z9c:K (3.01) BS01 rna N/A N/A N/A 39143216
    929668 8z9c:L (3.01) BS01 rna N/A N/A N/A 39143216
    929669 8z9d:1 (3.22) BS01 CHL N/A GO:0009416 ... P12333 39671473
    929670 8z9d:1 (3.22) BS02 CLA N/A GO:0009416 ... P12333 39671473
    929671 8z9d:1 (3.22) BS03 CLA N/A GO:0009416 ... P12333 39671473
    929672 8z9d:1 (3.22) BS04 CLA N/A GO:0009416 ... P12333 39671473
    929673 8z9d:1 (3.22) BS05 CHL N/A GO:0009416 ... P12333 39671473
    929674 8z9d:1 (3.22) BS06 CHL N/A GO:0009416 ... P12333 39671473
    929675 8z9d:1 (3.22) BS07 CHL N/A GO:0009416 ... P12333 39671473
    929676 8z9d:1 (3.22) BS08 CHL N/A GO:0009416 ... P12333 39671473
    929677 8z9d:1 (3.22) BS09 CLA N/A GO:0009416 ... P12333 39671473
    929678 8z9d:1 (3.22) BS10 CLA N/A GO:0009416 ... P12333 39671473
    929679 8z9d:1 (3.22) BS11 CLA N/A GO:0009416 ... P12333 39671473
    929680 8z9d:1 (3.22) BS12 CLA N/A GO:0009416 ... P12333 39671473
    929681 8z9d:11 (3.22) BS01 CHL N/A GO:0009416 ... P12333 39671473
    929682 8z9d:11 (3.22) BS02 CLA N/A GO:0009416 ... P12333 39671473
    929683 8z9d:11 (3.22) BS03 CLA N/A GO:0009416 ... P12333 39671473
    929684 8z9d:11 (3.22) BS04 CLA N/A GO:0009416 ... P12333 39671473
    929685 8z9d:11 (3.22) BS05 CHL N/A GO:0009416 ... P12333 39671473
    929686 8z9d:11 (3.22) BS06 CHL N/A GO:0009416 ... P12333 39671473
    929687 8z9d:11 (3.22) BS07 CHL N/A GO:0009416 ... P12333 39671473
    929688 8z9d:11 (3.22) BS08 CHL N/A GO:0009416 ... P12333 39671473
    929689 8z9d:11 (3.22) BS09 CLA N/A GO:0009416 ... P12333 39671473
    929690 8z9d:11 (3.22) BS10 CLA N/A GO:0009416 ... P12333 39671473
    929691 8z9d:11 (3.22) BS11 CLA N/A GO:0009416 ... P12333 39671473
    929692 8z9d:11 (3.22) BS12 CLA N/A GO:0009416 ... P12333 39671473
    929693 8z9d:11 (3.22) BS13 CLA N/A GO:0009416 ... P12333 39671473
    929694 8z9d:2 (3.22) BS01 CHL N/A GO:0009416 ... P12333 39671473
    929695 8z9d:2 (3.22) BS02 CLA N/A GO:0009416 ... P12333 39671473
    929696 8z9d:2 (3.22) BS03 CLA N/A GO:0009416 ... P12333 39671473
    929697 8z9d:2 (3.22) BS04 CHL N/A GO:0009416 ... P12333 39671473
    929698 8z9d:2 (3.22) BS05 CHL N/A GO:0009416 ... P12333 39671473
    929699 8z9d:2 (3.22) BS06 CHL N/A GO:0009416 ... P12333 39671473
    929700 8z9d:2 (3.22) BS07 CLA N/A GO:0009416 ... P12333 39671473
    929701 8z9d:2 (3.22) BS08 CLA N/A GO:0009416 ... P12333 39671473
    929702 8z9d:2 (3.22) BS09 CLA N/A GO:0009416 ... P12333 39671473
    929703 8z9d:2 (3.22) BS10 CLA N/A GO:0009416 ... P12333 39671473
    929704 8z9d:2 (3.22) BS11 CLA N/A GO:0009416 ... P12333 39671473
    929705 8z9d:22 (3.22) BS01 CHL N/A GO:0009416 ... P12333 39671473
    929706 8z9d:22 (3.22) BS02 CLA N/A GO:0009416 ... P12333 39671473
    929707 8z9d:22 (3.22) BS03 CLA N/A GO:0009416 ... P12333 39671473
    929708 8z9d:22 (3.22) BS04 CHL N/A GO:0009416 ... P12333 39671473
    929709 8z9d:22 (3.22) BS05 CHL N/A GO:0009416 ... P12333 39671473
    929710 8z9d:22 (3.22) BS06 CHL N/A GO:0009416 ... P12333 39671473
    929711 8z9d:22 (3.22) BS07 CLA N/A GO:0009416 ... P12333 39671473
    929712 8z9d:22 (3.22) BS08 CLA N/A GO:0009416 ... P12333 39671473
    929713 8z9d:22 (3.22) BS09 CLA N/A GO:0009416 ... P12333 39671473
    929714 8z9d:3 (3.22) BS01 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929715 8z9d:3 (3.22) BS02 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929716 8z9d:3 (3.22) BS03 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929717 8z9d:3 (3.22) BS04 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929718 8z9d:3 (3.22) BS05 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929719 8z9d:3 (3.22) BS06 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929720 8z9d:3 (3.22) BS07 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929721 8z9d:3 (3.22) BS08 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929722 8z9d:3 (3.22) BS09 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929723 8z9d:3 (3.22) BS10 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929724 8z9d:3 (3.22) BS11 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929725 8z9d:33 (3.22) BS01 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929726 8z9d:33 (3.22) BS02 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929727 8z9d:33 (3.22) BS03 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929728 8z9d:33 (3.22) BS04 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929729 8z9d:33 (3.22) BS05 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929730 8z9d:33 (3.22) BS06 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929731 8z9d:33 (3.22) BS07 CHL N/A GO:0009416 ... A0A9R0J656 39671473
    929732 8z9d:33 (3.22) BS08 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929733 8z9d:33 (3.22) BS09 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929734 8z9d:33 (3.22) BS10 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929735 8z9d:33 (3.22) BS11 CLA N/A GO:0009416 ... A0A9R0J656 39671473
    929736 8z9d:4 (3.22) BS01 CLA N/A GO:0009416 ... P36494 39671473
    929737 8z9d:4 (3.22) BS02 CHL N/A GO:0009416 ... P36494 39671473
    929738 8z9d:4 (3.22) BS03 CLA N/A GO:0009416 ... P36494 39671473
    929739 8z9d:4 (3.22) BS04 CLA N/A GO:0009416 ... P36494 39671473
    929740 8z9d:4 (3.22) BS05 CHL N/A GO:0009416 ... P36494 39671473
    929741 8z9d:4 (3.22) BS06 CHL N/A GO:0009416 ... P36494 39671473
    929742 8z9d:4 (3.22) BS07 CHL N/A GO:0009416 ... P36494 39671473
    929743 8z9d:4 (3.22) BS08 CHL N/A GO:0009416 ... P36494 39671473
    929744 8z9d:4 (3.22) BS09 CLA N/A GO:0009416 ... P36494 39671473
    929745 8z9d:4 (3.22) BS10 CLA N/A GO:0009416 ... P36494 39671473
    929746 8z9d:4 (3.22) BS11 CLA N/A GO:0009416 ... P36494 39671473
    929747 8z9d:44 (3.22) BS01 CHL N/A GO:0009416 ... P36494 39671473
    929748 8z9d:44 (3.22) BS02 CLA N/A GO:0009416 ... P36494 39671473
    929749 8z9d:44 (3.22) BS03 CLA N/A GO:0009416 ... P36494 39671473
    929750 8z9d:44 (3.22) BS04 CHL N/A GO:0009416 ... P36494 39671473
    929751 8z9d:44 (3.22) BS05 CHL N/A GO:0009416 ... P36494 39671473
    929752 8z9d:44 (3.22) BS06 CHL N/A GO:0009416 ... P36494 39671473
    929753 8z9d:44 (3.22) BS07 CHL N/A GO:0009416 ... P36494 39671473
    929754 8z9d:44 (3.22) BS08 CLA N/A GO:0009416 ... P36494 39671473
    929755 8z9d:44 (3.22) BS09 CLA N/A GO:0009416 ... P36494 39671473
    929756 8z9d:44 (3.22) BS10 CLA N/A GO:0009416 ... P36494 39671473
    929757 8z9d:44 (3.22) BS11 CLA N/A GO:0009416 ... P36494 39671473
    929758 8z9d:44 (3.22) BS12 CLA N/A GO:0009416 ... P36494 39671473
    929759 8z9d:A (3.22) BS01 OEX N/A GO:0005506 ... P69560 39671473
    929760 8z9d:A (3.22) BS02 FE2 N/A GO:0005506 ... P69560 39671473
    929761 8z9d:A (3.22) BS03 CLA N/A GO:0005506 ... P69560 39671473
    929762 8z9d:A (3.22) BS04 CLA N/A GO:0005506 ... P69560 39671473
    929763 8z9d:A (3.22) BS05 PHO N/A GO:0005506 ... P69560 39671473
    929764 8z9d:A (3.22) BS06 CLA N/A GO:0005506 ... P69560 39671473
    929765 8z9d:A (3.22) BS07 CLA N/A GO:0005506 ... P69560 39671473
    929766 8z9d:A (3.22) BS08 PHO N/A GO:0005506 ... P69560 39671473
    929767 8z9d:A (3.22) BS09 BCT N/A GO:0005506 ... P69560 39671473
    929768 8z9d:AA (3.22) BS01 OEX N/A GO:0005506 ... P69560 39671473
    929769 8z9d:AA (3.22) BS02 FE2 N/A GO:0005506 ... P69560 39671473
    929770 8z9d:AA (3.22) BS03 CLA N/A GO:0005506 ... P69560 39671473
    929771 8z9d:AA (3.22) BS04 CLA N/A GO:0005506 ... P69560 39671473
    929772 8z9d:AA (3.22) BS05 PHO N/A GO:0005506 ... P69560 39671473
    929773 8z9d:AA (3.22) BS06 CLA N/A GO:0005506 ... P69560 39671473
    929774 8z9d:AA (3.22) BS07 BCT N/A GO:0005506 ... P69560 39671473
    929775 8z9d:AA (3.22) BS08 CLA N/A GO:0005506 ... P69560 39671473
    929776 8z9d:AA (3.22) BS09 PHO N/A GO:0005506 ... P69560 39671473
    929777 8z9d:Aa (3.22) BS01 FE2 N/A GO:0005506 ... P69560 39671473
    929778 8z9d:Aa (3.22) BS02 CLA N/A GO:0005506 ... P69560 39671473
    929779 8z9d:Aa (3.22) BS03 CLA N/A GO:0005506 ... P69560 39671473
    929780 8z9d:Aa (3.22) BS04 CLA N/A GO:0005506 ... P69560 39671473
    929781 8z9d:Aa (3.22) BS05 PHO N/A GO:0005506 ... P69560 39671473
    929782 8z9d:Aa (3.22) BS06 PHO N/A GO:0005506 ... P69560 39671473
    929783 8z9d:Aa (3.22) BS07 CLA N/A GO:0005506 ... P69560 39671473
    929784 8z9d:Aa (3.22) BS08 BCT N/A GO:0005506 ... P69560 39671473
    929785 8z9d:Aa (3.22) BS09 OEX N/A GO:0005506 ... P69560 39671473
    929786 8z9d:B (3.22) BS01 peptide N/A GO:0009521 ... P04160 39671473
    929787 8z9d:B (3.22) BS02 CLA N/A GO:0009521 ... P04160 39671473
    929788 8z9d:B (3.22) BS03 CLA N/A GO:0009521 ... P04160 39671473
    929789 8z9d:B (3.22) BS04 CLA N/A GO:0009521 ... P04160 39671473
    929790 8z9d:B (3.22) BS05 CLA N/A GO:0009521 ... P04160 39671473
    929791 8z9d:B (3.22) BS06 CLA N/A GO:0009521 ... P04160 39671473
    929792 8z9d:B (3.22) BS07 CLA N/A GO:0009521 ... P04160 39671473
    929793 8z9d:B (3.22) BS08 CLA N/A GO:0009521 ... P04160 39671473
    929794 8z9d:B (3.22) BS09 CLA N/A GO:0009521 ... P04160 39671473
    929795 8z9d:B (3.22) BS10 CLA N/A GO:0009521 ... P04160 39671473
    929796 8z9d:B (3.22) BS11 CLA N/A GO:0009521 ... P04160 39671473
    929797 8z9d:B (3.22) BS12 CLA N/A GO:0009521 ... P04160 39671473
    929798 8z9d:B (3.22) BS13 CLA N/A GO:0009521 ... P04160 39671473
    929799 8z9d:B (3.22) BS14 CLA N/A GO:0009521 ... P04160 39671473
    929800 8z9d:B (3.22) BS15 CLA N/A GO:0009521 ... P04160 39671473

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).