SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    930201 9dtr:o (2.31) BS03 rna N/A N/A P40968 38746449
    930202 9dtr:p (2.31) BS01 rna N/A N/A Q12330 38746449
    930203 9dtr:q (2.31) BS01 rna N/A N/A P54999 38746449
    930204 9dtr:r (2.31) BS01 rna N/A N/A P40204 38746449
    930205 9dtr:y (2.31) BS01 rna N/A N/A P53277 38746449
    930206 9dtr:y (2.31) BS02 rna N/A N/A P53277 38746449
    930207 9dtt:A (3.6) BS01 rna N/A N/A P14340 39677779
    930208 9dtt:A (3.6) BS02 ZN N/A N/A P14340 39677779
    930209 9dtt:A (3.6) BS03 ZN N/A N/A P14340 39677779
    930210 9du6:A (1.55) BS01 ATP N/A GO:0005829 ... B5XU49 N/A
    930211 9du6:B (1.55) BS01 ATP N/A GO:0005829 ... B5XU49 N/A
    930212 9du7:A (1.867) BS01 A1BCT N/A N/A Q14145 N/A
    930213 9du7:B (1.867) BS01 A1BCT N/A N/A Q14145 N/A
    930214 9du8:A (1.35) BS01 MG N/A GO:0005829 ... B5XU49 N/A
    930215 9du8:A (1.35) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    930216 9du8:A (1.35) BS03 ADP N/A GO:0005829 ... B5XU49 N/A
    930217 9du8:A (1.35) BS04 ADP N/A GO:0005829 ... B5XU49 N/A
    930218 9du8:B (1.35) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    930219 9du8:B (1.35) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    930220 9du8:B (1.35) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930221 9du8:B (1.35) BS04 ADP N/A GO:0005829 ... B5XU49 N/A
    930222 9du9:A (1.35) BS01 GDP N/A GO:0005829 ... B5XU49 N/A
    930223 9du9:A (1.35) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    930224 9du9:A (1.35) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930225 9du9:A (1.35) BS04 GDP N/A GO:0005829 ... B5XU49 N/A
    930226 9du9:B (1.35) BS01 GDP N/A GO:0005829 ... B5XU49 N/A
    930227 9du9:B (1.35) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    930228 9du9:B (1.35) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930229 9dua:A (1.4) BS01 5GP N/A GO:0005829 ... B5XU49 N/A
    930230 9dua:A (1.4) BS02 5GP N/A GO:0005829 ... B5XU49 N/A
    930231 9dua:B (1.4) BS01 5GP N/A GO:0005829 ... B5XU49 N/A
    930232 9dua:B (1.4) BS02 5GP N/A GO:0005829 ... B5XU49 N/A
    930233 9dua:B (1.4) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930234 9dub:A (1.5) BS01 A1BB7 N/A N/A P53355 N/A
    930235 9dud:A (1.32) BS01 FAD N/A GO:0005829 ... B5XU49 N/A
    930236 9dud:A (1.32) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    930237 9dud:A (1.32) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930238 9dud:A (1.32) BS04 FAD N/A GO:0005829 ... B5XU49 N/A
    930239 9dud:B (1.32) BS01 FAD N/A GO:0005829 ... B5XU49 N/A
    930240 9dud:B (1.32) BS02 FAD N/A GO:0005829 ... B5XU49 N/A
    930241 9dud:B (1.32) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930242 9dud:B (1.32) BS04 MG N/A GO:0005829 ... B5XU49 N/A
    930243 9due:A (1.65) BS01 A1BB6 N/A N/A P53355 N/A
    930244 9duf:A (1.32) BS01 FMN N/A GO:0005829 ... B5XU49 N/A
    930245 9duf:A (1.32) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    930246 9duf:A (1.32) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930247 9duf:A (1.32) BS04 FMN N/A GO:0005829 ... B5XU49 N/A
    930248 9duf:B (1.32) BS01 FMN N/A GO:0005829 ... B5XU49 N/A
    930249 9duf:B (1.32) BS02 FMN N/A GO:0005829 ... B5XU49 N/A
    930250 9duf:B (1.32) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    930251 9duf:B (1.32) BS04 MG N/A GO:0005829 ... B5XU49 N/A
    930252 9duk:B (2.56) BS01 rna N/A N/A N/A 39854700
    930253 9duk:C (2.56) BS01 rna N/A N/A N/A 39854700
    930254 9duk:D (2.56) BS01 rna N/A N/A N/A 39854700
    930255 9duk:E (2.56) BS01 rna N/A N/A N/A 39854700
    930256 9duk:F (2.56) BS01 rna N/A N/A N/A 39854700
    930257 9duk:G (2.56) BS01 rna N/A N/A N/A 39854700
    930258 9duk:H (2.56) BS01 rna N/A N/A N/A 39854700
    930259 9duk:I (2.56) BS01 rna N/A N/A N/A 39854700
    930260 9duk:J (2.56) BS01 rna N/A N/A N/A 39854700
    930261 9duk:K (2.56) BS01 rna N/A N/A N/A 39854700
    930262 9duk:L (2.56) BS01 rna N/A N/A N/A 39854700
    930263 9duk:M (2.56) BS01 rna N/A N/A N/A 39854700
    930264 9duk:N (2.56) BS01 rna N/A N/A N/A 39854700
    930265 9duk:O (2.56) BS01 rna N/A N/A N/A 39854700
    930266 9duk:P (2.56) BS01 rna N/A N/A N/A 39854700
    930267 9duk:Q (2.56) BS01 rna N/A N/A N/A 39854700
    930268 9duk:R (2.56) BS01 rna N/A N/A N/A 39854700
    930269 9duk:S (2.56) BS01 rna N/A N/A N/A 39854700
    930270 9duk:T (2.56) BS01 rna N/A N/A N/A 39854700
    930271 9duk:U (2.56) BS01 rna N/A N/A N/A 39854700
    930272 9dul:B (2.56) BS01 rna N/A N/A N/A 39854700
    930273 9dul:C (2.56) BS01 rna N/A N/A N/A 39854700
    930274 9dul:D (2.56) BS01 rna N/A N/A N/A 39854700
    930275 9dul:E (2.56) BS01 rna N/A N/A N/A 39854700
    930276 9dul:F (2.56) BS01 rna N/A N/A N/A 39854700
    930277 9dul:G (2.56) BS01 rna N/A N/A N/A 39854700
    930278 9dul:H (2.56) BS01 rna N/A N/A N/A 39854700
    930279 9dul:I (2.56) BS01 rna N/A N/A N/A 39854700
    930280 9dul:J (2.56) BS01 rna N/A N/A N/A 39854700
    930281 9dul:K (2.56) BS01 rna N/A N/A N/A 39854700
    930282 9dul:L (2.56) BS01 rna N/A N/A N/A 39854700
    930283 9dul:M (2.56) BS01 rna N/A N/A N/A 39854700
    930284 9dul:N (2.56) BS01 rna N/A N/A N/A 39854700
    930285 9dul:O (2.56) BS01 rna N/A N/A N/A 39854700
    930286 9dul:P (2.56) BS01 rna N/A N/A N/A 39854700
    930287 9dul:Q (2.56) BS01 rna N/A N/A N/A 39854700
    930288 9dul:R (2.56) BS01 rna N/A N/A N/A 39854700
    930289 9dul:S (2.56) BS01 rna N/A N/A N/A 39854700
    930290 9dul:T (2.56) BS01 rna N/A N/A N/A 39854700
    930291 9dul:U (2.56) BS01 rna N/A N/A N/A 39854700
    930292 9duq:A (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930293 9duq:A (2.8) BS02 MG N/A GO:0000226 ... Q2XVP4 39516491
    930294 9duq:B (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930295 9duq:C (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930296 9duq:C (2.8) BS02 G2P N/A GO:0000226 ... Q2XVP4 39516491
    930297 9duq:D (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930298 9duq:D (2.8) BS02 GTP N/A GO:0000226 ... P02554 39516491
    930299 9duq:E (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930300 9duq:E (2.8) BS02 MG N/A GO:0000226 ... Q2XVP4 39516491
    930301 9duq:F (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930302 9duq:G (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930303 9duq:H (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930304 9duq:I (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930305 9duq:J (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930306 9duq:K (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930307 9duq:L (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930308 9duq:M (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930309 9duq:N (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930310 9duq:O (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930311 9duq:P (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930312 9duq:Q (2.8) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516491
    930313 9duq:R (2.8) BS01 G2P N/A GO:0000226 ... P02554 39516491
    930314 9duu:A (3.4) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930315 9duu:A (3.4) BS02 peptide N/A GO:0001725 ... P68133 39503885
    930316 9duu:A (3.4) BS03 ADP N/A GO:0001725 ... P68133 39503885
    930317 9duu:B (3.4) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930318 9duu:B (3.4) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930319 9duu:C (3.4) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930320 9duu:C (3.4) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930321 9duu:D (3.4) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930322 9duu:D (3.4) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930323 9duu:E (3.4) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930324 9duu:E (3.4) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930325 9duu:F (3.4) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930326 9duu:F (3.4) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930327 9duv:A (3.3) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930328 9duv:A (3.3) BS02 peptide N/A GO:0001725 ... P68133 39503885
    930329 9duv:A (3.3) BS03 ADP N/A GO:0001725 ... P68133 39503885
    930330 9duv:B (3.3) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930331 9duv:B (3.3) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930332 9duv:C (3.3) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930333 9duv:C (3.3) BS02 peptide N/A GO:0001725 ... P68133 39503885
    930334 9duv:C (3.3) BS03 ADP N/A GO:0001725 ... P68133 39503885
    930335 9duv:D (3.3) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930336 9duv:D (3.3) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930337 9duv:E (3.3) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930338 9duv:E (3.3) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930339 9duv:F (3.3) BS01 peptide N/A GO:0001725 ... P68133 39503885
    930340 9duv:F (3.3) BS02 ADP N/A GO:0001725 ... P68133 39503885
    930341 9dv9:A (1.3) BS01 AMP N/A N/A C8PR54 39787173
    930342 9dva:A (3.1) BS01 ADP N/A GO:0001725 ... P68139 39415991
    930343 9dva:B (3.1) BS01 ADP N/A GO:0001725 ... P68139 39415991
    930344 9dva:C (3.1) BS01 ADP N/A GO:0001725 ... P68139 39415991
    930345 9dva:D (3.1) BS01 ADP N/A GO:0001725 ... P68139 39415991
    930346 9dva:E (3.1) BS01 ADP N/A GO:0001725 ... P68139 39415991
    930347 9dw4:A (9.0) BS01 peptide N/A GO:0005254 ... P13569 39495916
    930348 9dw5:G (3.8) BS01 MG N/A GO:0000287 ... P00517 39495916
    930349 9dw5:G (3.8) BS02 ANP N/A GO:0000287 ... P00517 39495916
    930350 9dw6:A (1.9) BS01 peptide N/A N/A P0DTD1 39773525
    930351 9dw7:G (6.0) BS01 MG N/A GO:0000287 ... P00517 39495916
    930352 9dw7:G (6.0) BS02 ANP N/A GO:0000287 ... P00517 39495916
    930353 9dw8:A (3.5) BS01 B44 N/A GO:0005254 ... P13569 39495916
    930354 9dw8:A (3.5) BS02 B44 N/A GO:0005254 ... P13569 39495916
    930355 9dw8:G (3.5) BS01 MG N/A GO:0000287 ... P00517 39495916
    930356 9dw8:G (3.5) BS02 ANP N/A GO:0000287 ... P00517 39495916
    930357 9dw9:A (2.8) BS01 MG N/A GO:0005254 ... P13569 39495916
    930358 9dw9:A (2.8) BS02 MG N/A GO:0005254 ... P13569 39495916
    930359 9dw9:A (2.8) BS03 ATP N/A GO:0005254 ... P13569 39495916
    930360 9dw9:A (2.8) BS04 ATP N/A GO:0005254 ... P13569 39495916
    930361 9dw9:G (2.8) BS01 ATP N/A GO:0000287 ... P00517 39495916
    930362 9dw9:G (2.8) BS02 MG N/A GO:0000287 ... P00517 39495916
    930363 9dwd:A (3.13) BS01 QNG N/A N/A P04591 39416065
    930364 9dwd:A (3.13) BS02 QNG N/A N/A P04591 39416065
    930365 9dwd:B (3.13) BS01 QNG N/A N/A P04591 39416065
    930366 9dwd:B (3.13) BS02 QNG N/A N/A P04591 39416065
    930367 9dwd:C (3.13) BS01 QNG N/A N/A P04591 39416065
    930368 9dwd:D (3.13) BS01 QNG N/A N/A P04591 39416065
    930369 9dwd:D (3.13) BS02 QNG N/A N/A P04591 39416065
    930370 9dwd:E (3.13) BS01 QNG N/A N/A P04591 39416065
    930371 9dwd:E (3.13) BS02 QNG N/A N/A P04591 39416065
    930372 9dwd:F (3.13) BS01 QNG N/A N/A P04591 39416065
    930373 9dwd:G (3.13) BS01 IHP N/A N/A P04591 39416065
    930374 9dwd:G (3.13) BS02 QNG N/A N/A P04591 39416065
    930375 9dwd:G (3.13) BS03 QNG N/A N/A P04591 39416065
    930376 9dwd:H (3.13) BS01 QNG N/A N/A P04591 39416065
    930377 9dwd:H (3.13) BS02 QNG N/A N/A P04591 39416065
    930378 9dwd:I (3.13) BS01 QNG N/A N/A P04591 39416065
    930379 9dwd:J (3.13) BS01 QNG N/A N/A P04591 39416065
    930380 9dwd:J (3.13) BS02 QNG N/A N/A P04591 39416065
    930381 9dwd:K (3.13) BS01 QNG N/A N/A P04591 39416065
    930382 9dwd:K (3.13) BS02 QNG N/A N/A P04591 39416065
    930383 9dwd:L (3.13) BS01 QNG N/A N/A P04591 39416065
    930384 9dwd:M (3.13) BS01 QNG N/A N/A P04591 39416065
    930385 9dwd:M (3.13) BS02 QNG N/A N/A P04591 39416065
    930386 9dwd:N (3.13) BS01 QNG N/A N/A P04591 39416065
    930387 9dwd:N (3.13) BS02 QNG N/A N/A P04591 39416065
    930388 9dwd:O (3.13) BS01 QNG N/A N/A P04591 39416065
    930389 9dwd:P (3.13) BS01 QNG N/A N/A P04591 39416065
    930390 9dwd:P (3.13) BS02 QNG N/A N/A P04591 39416065
    930391 9dwd:Q (3.13) BS01 QNG N/A N/A P04591 39416065
    930392 9dwd:Q (3.13) BS02 QNG N/A N/A P04591 39416065
    930393 9dwd:R (3.13) BS01 QNG N/A N/A P04591 39416065
    930394 9dwe:A (2.8) BS01 GAL N/A GO:0016020 ... A0A8E4ZAK5 39737954
    930395 9dwe:A (2.8) BS02 SIA N/A GO:0016020 ... A0A8E4ZAK5 39737954
    930396 9dwe:B (2.8) BS01 GAL N/A GO:0016020 ... A0A8E4ZAK5 39737954
    930397 9dwe:B (2.8) BS02 SIA N/A GO:0016020 ... A0A8E4ZAK5 39737954
    930398 9dwe:C (2.8) BS01 SIA N/A GO:0016020 ... A0A8E4ZAK5 39737954
    930399 9dwf:A (3.1) BS01 dna N/A N/A Q71DI3 N/A
    930400 9dwf:A (3.1) BS02 dna N/A N/A Q71DI3 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).