SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    930401 9dwf:A (3.1) BS03 dna N/A N/A Q71DI3 N/A
    930402 9dwf:B (3.1) BS01 dna N/A N/A P62805 N/A
    930403 9dwf:B (3.1) BS02 dna N/A N/A P62805 N/A
    930404 9dwf:C (3.1) BS01 dna N/A N/A P0C0S8 N/A
    930405 9dwf:C (3.1) BS02 dna N/A N/A P0C0S8 N/A
    930406 9dwf:D (3.1) BS01 dna N/A N/A P62807 N/A
    930407 9dwf:D (3.1) BS02 dna N/A N/A P62807 N/A
    930408 9dwf:E (3.1) BS01 dna N/A N/A Q71DI3 N/A
    930409 9dwf:E (3.1) BS02 dna N/A N/A Q71DI3 N/A
    930410 9dwf:F (3.1) BS01 dna N/A N/A P62805 N/A
    930411 9dwf:F (3.1) BS02 dna N/A N/A P62805 N/A
    930412 9dwf:G (3.1) BS01 dna N/A N/A P0C0S8 N/A
    930413 9dwf:G (3.1) BS02 dna N/A N/A P0C0S8 N/A
    930414 9dwf:G (3.1) BS03 dna N/A N/A P0C0S8 N/A
    930415 9dwf:H (3.1) BS01 dna N/A N/A P62807 N/A
    930416 9dwf:H (3.1) BS02 dna N/A N/A P62807 N/A
    930417 9dwg:A (3.3) BS01 dna N/A N/A Q71DI3 N/A
    930418 9dwg:A (3.3) BS02 dna N/A N/A Q71DI3 N/A
    930419 9dwg:B (3.3) BS01 dna N/A N/A P62805 N/A
    930420 9dwg:B (3.3) BS02 dna N/A N/A P62805 N/A
    930421 9dwg:C (3.3) BS01 dna N/A N/A P0C0S8 N/A
    930422 9dwg:C (3.3) BS02 dna N/A N/A P0C0S8 N/A
    930423 9dwg:D (3.3) BS01 dna N/A N/A P62807 N/A
    930424 9dwg:D (3.3) BS02 dna N/A N/A P62807 N/A
    930425 9dwg:E (3.3) BS01 dna N/A N/A Q71DI3 N/A
    930426 9dwg:E (3.3) BS02 dna N/A N/A Q71DI3 N/A
    930427 9dwg:F (3.3) BS01 dna N/A N/A P62805 N/A
    930428 9dwg:F (3.3) BS02 dna N/A N/A P62805 N/A
    930429 9dwg:G (3.3) BS01 dna N/A N/A P0C0S8 N/A
    930430 9dwg:G (3.3) BS02 dna N/A N/A P0C0S8 N/A
    930431 9dwg:L (3.3) BS01 dna N/A N/A P06746 N/A
    930432 9dwg:L (3.3) BS02 dna N/A N/A P06746 N/A
    930433 9dwh:A (3.3) BS01 dna N/A N/A Q71DI3 N/A
    930434 9dwh:A (3.3) BS02 dna N/A N/A Q71DI3 N/A
    930435 9dwh:A (3.3) BS03 dna N/A N/A Q71DI3 N/A
    930436 9dwh:B (3.3) BS01 dna N/A N/A P62805 N/A
    930437 9dwh:B (3.3) BS02 dna N/A N/A P62805 N/A
    930438 9dwh:C (3.3) BS01 dna N/A N/A P0C0S8 N/A
    930439 9dwh:C (3.3) BS02 dna N/A N/A P0C0S8 N/A
    930440 9dwh:D (3.3) BS01 dna N/A N/A P62807 N/A
    930441 9dwh:D (3.3) BS02 dna N/A N/A P62807 N/A
    930442 9dwh:E (3.3) BS01 dna N/A N/A Q71DI3 N/A
    930443 9dwh:E (3.3) BS02 dna N/A N/A Q71DI3 N/A
    930444 9dwh:F (3.3) BS01 dna N/A N/A P62805 N/A
    930445 9dwh:F (3.3) BS02 dna N/A N/A P62805 N/A
    930446 9dwh:G (3.3) BS01 dna N/A N/A P0C0S8 N/A
    930447 9dwh:G (3.3) BS02 dna N/A N/A P0C0S8 N/A
    930448 9dwh:H (3.3) BS01 dna N/A N/A P62807 N/A
    930449 9dwh:H (3.3) BS02 dna N/A N/A P62807 N/A
    930450 9dwh:L (3.3) BS01 dna N/A N/A P06746 N/A
    930451 9dwh:L (3.3) BS02 dna N/A N/A P06746 N/A
    930452 9dwi:A (3.3) BS01 dna N/A N/A Q71DI3 N/A
    930453 9dwi:A (3.3) BS02 dna N/A N/A Q71DI3 N/A
    930454 9dwi:A (3.3) BS03 dna N/A N/A Q71DI3 N/A
    930455 9dwi:B (3.3) BS01 dna N/A N/A P62805 N/A
    930456 9dwi:B (3.3) BS02 dna N/A N/A P62805 N/A
    930457 9dwi:C (3.3) BS01 dna N/A N/A P0C0S8 N/A
    930458 9dwi:C (3.3) BS02 dna N/A N/A P0C0S8 N/A
    930459 9dwi:D (3.3) BS01 dna N/A N/A P62807 N/A
    930460 9dwi:D (3.3) BS02 dna N/A N/A P62807 N/A
    930461 9dwi:E (3.3) BS01 dna N/A N/A Q71DI3 N/A
    930462 9dwi:E (3.3) BS02 dna N/A N/A Q71DI3 N/A
    930463 9dwi:F (3.3) BS01 dna N/A N/A P62805 N/A
    930464 9dwi:F (3.3) BS02 dna N/A N/A P62805 N/A
    930465 9dwi:G (3.3) BS01 dna N/A N/A P0C0S8 N/A
    930466 9dwi:G (3.3) BS02 dna N/A N/A P0C0S8 N/A
    930467 9dwi:H (3.3) BS01 dna N/A N/A P62807 N/A
    930468 9dwi:H (3.3) BS02 dna N/A N/A P62807 N/A
    930469 9dwi:L (3.3) BS01 dna N/A N/A P06746 N/A
    930470 9dwi:L (3.3) BS02 dna N/A N/A P06746 N/A
    930471 9dwi:L (3.3) BS03 dna N/A N/A P06746 N/A
    930472 9dwj:A (3.4) BS01 dna N/A N/A Q71DI3 N/A
    930473 9dwj:A (3.4) BS02 dna N/A N/A Q71DI3 N/A
    930474 9dwj:A (3.4) BS03 dna N/A N/A Q71DI3 N/A
    930475 9dwj:B (3.4) BS01 dna N/A N/A P62805 N/A
    930476 9dwj:B (3.4) BS02 dna N/A N/A P62805 N/A
    930477 9dwj:C (3.4) BS01 dna N/A N/A P0C0S8 N/A
    930478 9dwj:C (3.4) BS02 dna N/A N/A P0C0S8 N/A
    930479 9dwj:D (3.4) BS01 dna N/A N/A P62807 N/A
    930480 9dwj:D (3.4) BS02 dna N/A N/A P62807 N/A
    930481 9dwj:E (3.4) BS01 dna N/A N/A Q71DI3 N/A
    930482 9dwj:E (3.4) BS02 dna N/A N/A Q71DI3 N/A
    930483 9dwj:F (3.4) BS01 dna N/A N/A P62805 N/A
    930484 9dwj:F (3.4) BS02 dna N/A N/A P62805 N/A
    930485 9dwj:G (3.4) BS01 dna N/A N/A P0C0S8 N/A
    930486 9dwj:G (3.4) BS02 dna N/A N/A P0C0S8 N/A
    930487 9dwj:H (3.4) BS01 dna N/A N/A P62807 N/A
    930488 9dwj:H (3.4) BS02 dna N/A N/A P62807 N/A
    930489 9dwk:A (4.3) BS01 dna N/A N/A Q71DI3 N/A
    930490 9dwk:A (4.3) BS02 dna N/A N/A Q71DI3 N/A
    930491 9dwk:B (4.3) BS01 dna N/A N/A P62805 N/A
    930492 9dwk:C (4.3) BS01 dna N/A N/A P0C0S8 N/A
    930493 9dwk:C (4.3) BS02 dna N/A N/A P0C0S8 N/A
    930494 9dwk:D (4.3) BS01 dna N/A N/A P62807 N/A
    930495 9dwk:E (4.3) BS01 dna N/A N/A Q71DI3 N/A
    930496 9dwk:E (4.3) BS02 dna N/A N/A Q71DI3 N/A
    930497 9dwk:F (4.3) BS01 dna N/A N/A P62805 N/A
    930498 9dwk:F (4.3) BS02 dna N/A N/A P62805 N/A
    930499 9dwk:G (4.3) BS01 dna N/A N/A P0C0S8 N/A
    930500 9dwk:G (4.3) BS02 dna N/A N/A P0C0S8 N/A
    930501 9dwk:L (4.3) BS01 dna N/A N/A P06746 N/A
    930502 9dwk:L (4.3) BS02 dna N/A N/A P06746 N/A
    930503 9dwl:A (3.9) BS01 dna N/A N/A Q71DI3 N/A
    930504 9dwl:A (3.9) BS02 dna N/A N/A Q71DI3 N/A
    930505 9dwl:A (3.9) BS03 dna N/A N/A Q71DI3 N/A
    930506 9dwl:B (3.9) BS01 dna N/A N/A P62805 N/A
    930507 9dwl:B (3.9) BS02 dna N/A N/A P62805 N/A
    930508 9dwl:C (3.9) BS01 dna N/A N/A P0C0S8 N/A
    930509 9dwl:C (3.9) BS02 dna N/A N/A P0C0S8 N/A
    930510 9dwl:D (3.9) BS01 dna N/A N/A P62807 N/A
    930511 9dwl:E (3.9) BS01 dna N/A N/A Q71DI3 N/A
    930512 9dwl:E (3.9) BS02 dna N/A N/A Q71DI3 N/A
    930513 9dwl:F (3.9) BS01 dna N/A N/A P62805 N/A
    930514 9dwl:F (3.9) BS02 dna N/A N/A P62805 N/A
    930515 9dwl:G (3.9) BS01 dna N/A N/A P0C0S8 N/A
    930516 9dwl:G (3.9) BS02 dna N/A N/A P0C0S8 N/A
    930517 9dwl:G (3.9) BS03 dna N/A N/A P0C0S8 N/A
    930518 9dwl:H (3.9) BS01 dna N/A N/A P62807 N/A
    930519 9dwm:A (4.2) BS01 dna N/A N/A Q71DI3 N/A
    930520 9dwm:A (4.2) BS02 dna N/A N/A Q71DI3 N/A
    930521 9dwm:B (4.2) BS01 dna N/A N/A P62805 N/A
    930522 9dwm:C (4.2) BS01 dna N/A N/A P0C0S8 N/A
    930523 9dwm:C (4.2) BS02 dna N/A N/A P0C0S8 N/A
    930524 9dwm:D (4.2) BS01 dna N/A N/A P62807 N/A
    930525 9dwm:E (4.2) BS01 dna N/A N/A Q71DI3 N/A
    930526 9dwm:E (4.2) BS02 dna N/A N/A Q71DI3 N/A
    930527 9dwm:F (4.2) BS01 dna N/A N/A P62805 N/A
    930528 9dwm:G (4.2) BS01 dna N/A N/A P0C0S8 N/A
    930529 9dwm:L (4.2) BS01 dna N/A N/A P06746 N/A
    930530 9dwm:L (4.2) BS02 dna N/A N/A P06746 N/A
    930531 9dxq:A (2.81) BS01 2J9 N/A N/A P42260 39592599
    930532 9dxq:A (2.81) BS02 2J9 N/A N/A P42260 39592599
    930533 9dxq:B (2.81) BS01 2J9 N/A N/A P42260 39592599
    930534 9dxq:B (2.81) BS02 2J9 N/A N/A P42260 39592599
    930535 9dxq:C (2.81) BS01 2J9 N/A N/A P42260 39592599
    930536 9dxq:C (2.81) BS02 2J9 N/A N/A P42260 39592599
    930537 9dxq:C (2.81) BS03 A1BDR N/A N/A P42260 39592599
    930538 9dxq:D (2.81) BS01 2J9 N/A N/A P42260 39592599
    930539 9dxq:D (2.81) BS02 2J9 N/A N/A P42260 39592599
    930540 9dxr:A (3.1) BS01 2J9 N/A N/A P42260 39592599
    930541 9dxr:A (3.1) BS02 2J9 N/A N/A P42260 39592599
    930542 9dxr:A (3.1) BS03 A1BDS N/A N/A P42260 39592599
    930543 9dxr:B (3.1) BS01 A1BDS N/A N/A P42260 39592599
    930544 9dxr:B (3.1) BS02 2J9 N/A N/A P42260 39592599
    930545 9dxr:B (3.1) BS03 2J9 N/A N/A P42260 39592599
    930546 9dxr:C (3.1) BS01 A1BDS N/A N/A P42260 39592599
    930547 9dxr:C (3.1) BS02 2J9 N/A N/A P42260 39592599
    930548 9dxr:C (3.1) BS03 2J9 N/A N/A P42260 39592599
    930549 9dxr:D (3.1) BS01 2J9 N/A N/A P42260 39592599
    930550 9dxr:D (3.1) BS02 2J9 N/A N/A P42260 39592599
    930551 9dxr:D (3.1) BS03 A1BDS N/A N/A P42260 39592599
    930552 9dxs:A (3.55) BS01 2J9 N/A N/A P42260 39592599
    930553 9dxs:A (3.55) BS02 SPM N/A N/A P42260 39592599
    930554 9dxs:A (3.55) BS03 2J9 N/A N/A P42260 39592599
    930555 9dxs:B (3.55) BS01 2J9 N/A N/A P42260 39592599
    930556 9dxs:B (3.55) BS02 2J9 N/A N/A P42260 39592599
    930557 9dxs:C (3.55) BS01 2J9 N/A N/A P42260 39592599
    930558 9dxs:C (3.55) BS02 2J9 N/A N/A P42260 39592599
    930559 9dxs:D (3.55) BS01 2J9 N/A N/A P42260 39592599
    930560 9dxs:D (3.55) BS02 2J9 N/A N/A P42260 39592599
    930561 9dxt:A (3.75) BS01 2J9 N/A N/A P42260 39592599
    930562 9dxt:A (3.75) BS02 2J9 N/A N/A P42260 39592599
    930563 9dxt:B (3.75) BS01 CLR N/A N/A P42260 39592599
    930564 9dxt:B (3.75) BS02 CLR N/A N/A P42260 39592599
    930565 9dxt:B (3.75) BS03 2J9 N/A N/A P42260 39592599
    930566 9dxt:B (3.75) BS04 CLR N/A N/A P42260 39592599
    930567 9dxt:B (3.75) BS05 2J9 N/A N/A P42260 39592599
    930568 9dxt:B (3.75) BS06 A1BDT N/A N/A P42260 39592599
    930569 9dxt:C (3.75) BS01 2J9 N/A N/A P42260 39592599
    930570 9dxt:C (3.75) BS02 2J9 N/A N/A P42260 39592599
    930571 9dxt:C (3.75) BS03 A1BDT N/A N/A P42260 39592599
    930572 9dxt:D (3.75) BS01 2J9 N/A N/A P42260 39592599
    930573 9dxt:D (3.75) BS02 2J9 N/A N/A P42260 39592599
    930574 9dxt:D (3.75) BS03 CLR N/A N/A P42260 39592599
    930575 9dxt:D (3.75) BS04 CLR N/A N/A P42260 39592599
    930576 9dxt:D (3.75) BS05 CLR N/A N/A P42260 39592599
    930577 9dxt:D (3.75) BS06 A1BDT N/A N/A P42260 39592599
    930578 9dyg:2 (5.27) BS01 rna N/A N/A P0A7P5 N/A
    930579 9dyg:D (5.27) BS01 rna N/A GO:0000027 ... P60438 N/A
    930580 9dyg:E (5.27) BS01 rna N/A GO:0001070 ... P60723 N/A
    930581 9dyg:J (5.27) BS01 rna N/A GO:0003729 ... P0AA10 N/A
    930582 9dyg:N (5.27) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    930583 9dyg:P (5.27) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    930584 9dyg:Q (5.27) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    930585 9dyg:R (5.27) BS01 rna N/A GO:0003735 ... P0AG48 N/A
    930586 9dyg:S (5.27) BS01 rna N/A GO:0002181 ... P61175 N/A
    930587 9dyg:T (5.27) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    930588 9dyg:U (5.27) BS01 rna N/A GO:0005829 ... P60624 N/A
    930589 9dyg:Y (5.27) BS01 rna N/A GO:0005840 ... C3SQY2 N/A
    930590 9dyh:A (3.15) BS01 CA N/A N/A Q8NFU1 39737942
    930591 9dyh:B (3.15) BS01 CA N/A N/A Q8NFU1 39737942
    930592 9dyh:C (3.15) BS01 CA N/A N/A Q8NFU1 39737942
    930593 9dyh:D (3.15) BS01 CA N/A N/A Q8NFU1 39737942
    930594 9dyh:E (3.15) BS01 CA N/A N/A Q8NFU1 39737942
    930595 9dyi:A (3.03) BS01 GLU N/A N/A Q8NFU1 39737942
    930596 9dyi:A (3.03) BS02 CA N/A N/A Q8NFU1 39737942
    930597 9dyi:B (3.03) BS01 GLU N/A N/A Q8NFU1 39737942
    930598 9dyi:B (3.03) BS02 CA N/A N/A Q8NFU1 39737942
    930599 9dyi:C (3.03) BS01 GLU N/A N/A Q8NFU1 39737942
    930600 9dyi:C (3.03) BS02 CA N/A N/A Q8NFU1 39737942

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).