SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    930601 8zdd:G (3.7) BS01 rna N/A GO:0002181 ... P62753 39947183
    930602 8zdd:H (3.7) BS01 rna N/A GO:0002181 ... P62081 39947183
    930603 8zdd:I (3.7) BS01 rna N/A GO:0002181 ... P62241 39947183
    930604 8zdd:J (3.7) BS01 rna N/A GO:0002181 ... P46781 39947183
    930605 8zdd:K (3.7) BS01 rna N/A GO:0002181 ... P46783 39947183
    930606 8zdd:L (3.7) BS01 rna N/A GO:0002181 ... P62280 39947183
    930607 8zdd:M (3.7) BS01 rna N/A GO:0002181 ... P25398 39947183
    930608 8zdd:N (3.7) BS01 rna N/A GO:0000462 ... P62277 39947183
    930609 8zdd:O (3.7) BS01 rna N/A GO:0000028 ... P62263 39947183
    930610 8zdd:P (3.7) BS01 rna N/A GO:0000056 ... P62841 39947183
    930611 8zdd:Q (3.7) BS01 rna N/A GO:0000462 ... P62249 39947183
    930612 8zdd:R (3.7) BS01 rna N/A GO:0002181 ... P08708 39947183
    930613 8zdd:S (3.7) BS01 rna N/A GO:0002181 ... P62269 39947183
    930614 8zdd:T (3.7) BS01 rna N/A GO:0000028 ... P39019 39947183
    930615 8zdd:U (3.7) BS01 rna N/A GO:0002181 ... P60866 39947183
    930616 8zdd:V (3.7) BS01 rna N/A GO:0000447 ... P63220 39947183
    930617 8zdd:W (3.7) BS01 rna N/A GO:0002181 ... P62244 39947183
    930618 8zdd:X (3.7) BS01 rna N/A GO:0002181 ... P62266 39947183
    930619 8zdd:Y (3.7) BS01 rna N/A GO:0002181 ... P62847 39947183
    930620 8zdd:Z (3.7) BS01 rna N/A GO:0002181 ... P62851 39947183
    930621 8zdd:b (3.7) BS01 rna N/A GO:0002181 ... P42677 39947183
    930622 8zdd:c (3.7) BS01 rna N/A GO:0000028 ... P62857 39947183
    930623 8zdd:d (3.7) BS01 rna N/A GO:0002181 ... P62273 39947183
    930624 8zdd:d (3.7) BS02 ZN N/A GO:0002181 ... P62273 39947183
    930625 8zdd:g (3.7) BS01 rna N/A GO:0001891 ... P63244 39947183
    930626 8zdd:p (3.7) BS01 rna N/A GO:0003824 ... O14730 39947183
    930627 8zdd:t (3.7) BS01 rna N/A GO:0000056 ... Q96GA3 39947183
    930628 8zdd:u (3.7) BS01 rna N/A GO:0000462 ... Q2NL82 39947183
    930629 8zdd:x (3.7) BS01 rna N/A GO:0003676 ... Q9NRX1 39947183
    930630 8zde:A (2.91) BS01 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930631 8zde:A (2.91) BS02 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930632 8zde:B (2.91) BS01 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930633 8zde:B (2.91) BS02 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930634 8zde:C (2.91) BS01 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930635 8zde:C (2.91) BS02 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930636 8zde:D (2.91) BS01 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930637 8zde:D (2.91) BS02 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930638 8zde:E (2.91) BS01 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930639 8zde:E (2.91) BS02 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930640 8zde:F (2.91) BS01 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930641 8zde:F (2.91) BS02 dna N/A GO:0003700 ... A0A9R0BIW1 N/A
    930642 8zdf:A (3.16) BS01 A1D8D N/A GO:0007155 ... P06756 N/A
    930643 8zdf:B (3.16) BS01 A1D8D N/A N/A P05106 N/A
    930644 8zdg:A (3.03) BS01 A1D8D N/A GO:0007155 ... P06756 N/A
    930645 8zdg:B (3.03) BS01 A1D8D N/A N/A P05106 N/A
    930646 8zdr:C (2.65) BS01 rna N/A GO:0003676 ... N/A 40075056
    930647 8zdr:C (2.65) BS02 dna N/A GO:0003676 ... N/A 40075056
    930648 8zdr:C (2.65) BS03 dna N/A GO:0003676 ... N/A 40075056
    930649 8zdr:C (2.65) BS04 ZN N/A GO:0003676 ... N/A 40075056
    930650 8zdv:A (2.8) BS01 SIA N/A GO:0019031 ... A0A8E4ZAK5 40295773
    930651 8zdv:B (2.8) BS01 SIA N/A GO:0019031 ... A0A8E4ZAK5 40295773
    930652 8zdv:C (2.8) BS01 SIA N/A GO:0019031 ... A0A8E4ZAK5 40295773
    930653 8zdw:A (3.45) BS01 SIA N/A GO:0019031 ... Q6DQ33 40295773
    930654 8zdw:C (3.45) BS01 SIA N/A GO:0019031 ... Q6DQ33 40295773
    930655 8zdw:H (3.45) BS01 SIA N/A GO:0019031 ... Q6DQ33 40295773
    930656 8zdy:A (3.6) BS01 rna N/A N/A A0A1K1P0W7 39251884
    930657 8zdy:B (3.6) BS01 rna N/A N/A A0A1K1P0W7 39251884
    930658 8zdy:C (3.6) BS01 rna N/A N/A A0A1K1P0W7 39251884
    930659 8zdy:D (3.6) BS01 rna N/A N/A A0A1K1P0W7 39251884
    930660 8zdy:E (3.6) BS01 rna N/A N/A A0A1K1P0W7 39251884
    930661 8zdy:F (3.6) BS01 rna N/A N/A A0A1K1P0W7 39251884
    930662 8zdy:G (3.6) BS01 rna N/A GO:0003676 ... A0A1K1NYH3 39251884
    930663 8zdy:H (3.6) BS01 rna N/A N/A A0A1K1NY43 39251884
    930664 8zdy:I (3.6) BS01 rna N/A GO:0004519 ... A0A1K1NXL9 39251884
    930665 8ze2:A (2.57) BS01 Z9N N/A GO:0001582 ... P83293 39103325
    930666 8ze2:A (2.57) BS02 GLC N/A GO:0001582 ... P83293 39103325
    930667 8ze2:B (2.57) BS01 Z9N N/A GO:0001582 ... P83293 39103325
    930668 8ze2:B (2.57) BS02 GLC N/A GO:0001582 ... P83293 39103325
    930669 8ze2:C (2.57) BS01 Z9N N/A GO:0001582 ... P83293 39103325
    930670 8ze2:C (2.57) BS02 GLC N/A GO:0001582 ... P83293 39103325
    930671 8ze2:D (2.57) BS01 Z9N N/A GO:0001582 ... P83293 39103325
    930672 8ze2:D (2.57) BS02 GLC N/A GO:0001582 ... P83293 39103325
    930673 8ze3:A (3.17) BS01 FRU N/A GO:0005886 ... B4KNE2 39103325
    930674 8ze3:B (3.17) BS01 FRU N/A GO:0005886 ... B4KNE2 39103325
    930675 8ze3:C (3.17) BS01 FRU N/A GO:0005886 ... B4KNE2 39103325
    930676 8ze3:D (3.17) BS01 FRU N/A GO:0005886 ... B4KNE2 39103325
    930677 8ze4:A (3.33) BS01 SAM N/A GO:0004482 ... A0A7H0DN85 38873898
    930678 8ze7:A (2.22) BS01 LYS N/A GO:0030246 ... P55915 N/A
    930679 8ze7:A (2.22) BS02 CA N/A GO:0030246 ... P55915 N/A
    930680 8ze7:A (2.22) BS03 MN N/A GO:0030246 ... P55915 N/A
    930681 8ze8:A (2.07) BS01 peptide N/A GO:0005096 ... Q9QWY8 39265663
    930682 8ze8:B (2.07) BS01 peptide N/A GO:0005096 ... Q9QWY8 39265663
    930683 8ze8:D (2.07) BS01 peptide N/A GO:0005096 ... Q9QWY8 39265663
    930684 8ze8:G (2.07) BS01 peptide N/A GO:0005096 ... Q9QWY8 39265663
    930685 8ze9:A (2.4) BS01 TKU N/A GO:0003824 ... G8TV28 39642872
    930686 8zeb:A (1.95) BS01 peptide N/A GO:0042981 ... Q07817 N/A
    930687 8zeb:B (1.95) BS01 peptide N/A GO:0042981 ... Q07817 N/A
    930688 8zec:A (1.65) BS01 A1D8G N/A N/A N/A 39430940
    930689 8zec:B (1.65) BS01 A1D8G N/A N/A N/A 39430940
    930690 8zed:A (2.37) BS01 CA N/A N/A A0A0U5GHC1 39430940
    930691 8zed:B (2.37) BS01 CA N/A N/A A0A0U5GHC1 39430940
    930692 8zed:C (2.37) BS01 CA N/A N/A A0A0U5GHC1 39430940
    930693 8zed:D (2.37) BS01 CA N/A N/A A0A0U5GHC1 39430940
    930694 8zee:A (2.9) BS01 BCT N/A GO:0005506 ... P07753 38890314
    930695 8zee:A (2.9) BS02 CLA N/A GO:0005506 ... P07753 38890314
    930696 8zee:A (2.9) BS03 PHO N/A GO:0005506 ... P07753 38890314
    930697 8zee:A (2.9) BS04 FE2 N/A GO:0005506 ... P07753 38890314
    930698 8zee:A (2.9) BS05 CLA N/A GO:0005506 ... P07753 38890314
    930699 8zee:A (2.9) BS06 CLA N/A GO:0005506 ... P07753 38890314
    930700 8zee:A (2.9) BS07 CLA N/A GO:0005506 ... P07753 38890314
    930701 8zee:B (2.9) BS01 CLA N/A GO:0009521 ... P37255 38890314
    930702 8zee:B (2.9) BS02 CLA N/A GO:0009521 ... P37255 38890314
    930703 8zee:B (2.9) BS03 CLA N/A GO:0009521 ... P37255 38890314
    930704 8zee:B (2.9) BS04 CLA N/A GO:0009521 ... P37255 38890314
    930705 8zee:B (2.9) BS05 CLA N/A GO:0009521 ... P37255 38890314
    930706 8zee:B (2.9) BS06 CLA N/A GO:0009521 ... P37255 38890314
    930707 8zee:B (2.9) BS07 CLA N/A GO:0009521 ... P37255 38890314
    930708 8zee:B (2.9) BS08 CLA N/A GO:0009521 ... P37255 38890314
    930709 8zee:B (2.9) BS09 CLA N/A GO:0009521 ... P37255 38890314
    930710 8zee:B (2.9) BS10 CLA N/A GO:0009521 ... P37255 38890314
    930711 8zee:B (2.9) BS11 CLA N/A GO:0009521 ... P37255 38890314
    930712 8zee:B (2.9) BS12 CLA N/A GO:0009521 ... P37255 38890314
    930713 8zee:B (2.9) BS13 CLA N/A GO:0009521 ... P37255 38890314
    930714 8zee:B (2.9) BS14 CLA N/A GO:0009521 ... P37255 38890314
    930715 8zee:B (2.9) BS15 CLA N/A GO:0009521 ... P37255 38890314
    930716 8zee:C (2.9) BS01 CLA N/A GO:0005737 ... P10898 38890314
    930717 8zee:C (2.9) BS02 CLA N/A GO:0005737 ... P10898 38890314
    930718 8zee:C (2.9) BS03 CLA N/A GO:0005737 ... P10898 38890314
    930719 8zee:C (2.9) BS04 CLA N/A GO:0005737 ... P10898 38890314
    930720 8zee:C (2.9) BS05 CLA N/A GO:0005737 ... P10898 38890314
    930721 8zee:C (2.9) BS06 CLA N/A GO:0005737 ... P10898 38890314
    930722 8zee:C (2.9) BS07 CLA N/A GO:0005737 ... P10898 38890314
    930723 8zee:C (2.9) BS08 CLA N/A GO:0005737 ... P10898 38890314
    930724 8zee:C (2.9) BS09 CLA N/A GO:0005737 ... P10898 38890314
    930725 8zee:C (2.9) BS10 CLA N/A GO:0005737 ... P10898 38890314
    930726 8zee:C (2.9) BS11 CLA N/A GO:0005737 ... P10898 38890314
    930727 8zee:C (2.9) BS12 CLA N/A GO:0005737 ... P10898 38890314
    930728 8zee:C (2.9) BS13 CLA N/A GO:0005737 ... P10898 38890314
    930729 8zee:D (2.9) BS01 CLA N/A GO:0005506 ... P06007 38890314
    930730 8zee:D (2.9) BS02 BCT N/A GO:0005506 ... P06007 38890314
    930731 8zee:D (2.9) BS03 CLA N/A GO:0005506 ... P06007 38890314
    930732 8zee:D (2.9) BS04 CLA N/A GO:0005506 ... P06007 38890314
    930733 8zee:D (2.9) BS05 CLA N/A GO:0005506 ... P06007 38890314
    930734 8zee:D (2.9) BS06 PHO N/A GO:0005506 ... P06007 38890314
    930735 8zee:D (2.9) BS07 PHO N/A GO:0005506 ... P06007 38890314
    930736 8zee:D (2.9) BS08 FE2 N/A GO:0005506 ... P06007 38890314
    930737 8zee:D (2.9) BS09 CLA N/A GO:0005506 ... P06007 38890314
    930738 8zee:E (2.9) BS01 HEM N/A GO:0005506 ... P48268 38890314
    930739 8zee:F (2.9) BS01 HEM N/A GO:0005506 ... Q08363 38890314
    930740 8zee:F (2.9) BS02 VTQ N/A GO:0005506 ... Q08363 38890314
    930741 8zee:H (2.9) BS01 CLA N/A GO:0009523 ... P22666 38890314
    930742 8zee:H (2.9) BS02 CLA N/A GO:0009523 ... P22666 38890314
    930743 8zee:H (2.9) BS03 CLA N/A GO:0009523 ... P22666 38890314
    930744 8zee:I (2.9) BS01 CLA N/A GO:0005737 ... P59763 38890314
    930745 8zee:X (2.9) BS01 VTQ N/A GO:0009523 ... A8I846 38890314
    930746 8zef:A (3.21) BS01 dna N/A GO:0003676 ... Q2FYH5 N/A
    930747 8zef:A (3.21) BS02 dna N/A GO:0003676 ... Q2FYH5 N/A
    930748 8zef:A (3.21) BS03 CA N/A GO:0003676 ... Q2FYH5 N/A
    930749 8zef:A (3.21) BS04 CA N/A GO:0003676 ... Q2FYH5 N/A
    930750 8zeh:A (2.78) BS01 DD6 N/A GO:0009765 ... B8LE60 39670505
    930751 8zeh:A (2.78) BS02 DD6 N/A GO:0009765 ... B8LE60 39670505
    930752 8zeh:A (2.78) BS03 CLA N/A GO:0009765 ... B8LE60 39670505
    930753 8zeh:A (2.78) BS04 CLA N/A GO:0009765 ... B8LE60 39670505
    930754 8zeh:A (2.78) BS05 CLA N/A GO:0009765 ... B8LE60 39670505
    930755 8zeh:A (2.78) BS06 CLA N/A GO:0009765 ... B8LE60 39670505
    930756 8zeh:A (2.78) BS07 CLA N/A GO:0009765 ... B8LE60 39670505
    930757 8zeh:A (2.78) BS08 CLA N/A GO:0009765 ... B8LE60 39670505
    930758 8zeh:A (2.78) BS09 CLA N/A GO:0009765 ... B8LE60 39670505
    930759 8zeh:A (2.78) BS10 CLA N/A GO:0009765 ... B8LE60 39670505
    930760 8zeh:A (2.78) BS11 A86 N/A GO:0009765 ... B8LE60 39670505
    930761 8zeh:A (2.78) BS12 CLA N/A GO:0009765 ... B8LE60 39670505
    930762 8zeh:B (2.78) BS01 A86 N/A GO:0009416 ... B8C770 39670505
    930763 8zeh:B (2.78) BS02 A86 N/A GO:0009416 ... B8C770 39670505
    930764 8zeh:B (2.78) BS03 DD6 N/A GO:0009416 ... B8C770 39670505
    930765 8zeh:B (2.78) BS04 A86 N/A GO:0009416 ... B8C770 39670505
    930766 8zeh:B (2.78) BS05 A86 N/A GO:0009416 ... B8C770 39670505
    930767 8zeh:B (2.78) BS06 CLA N/A GO:0009416 ... B8C770 39670505
    930768 8zeh:B (2.78) BS07 CLA N/A GO:0009416 ... B8C770 39670505
    930769 8zeh:B (2.78) BS08 CLA N/A GO:0009416 ... B8C770 39670505
    930770 8zeh:B (2.78) BS09 CLA N/A GO:0009416 ... B8C770 39670505
    930771 8zeh:B (2.78) BS10 CLA N/A GO:0009416 ... B8C770 39670505
    930772 8zeh:B (2.78) BS11 CLA N/A GO:0009416 ... B8C770 39670505
    930773 8zeh:B (2.78) BS12 CLA N/A GO:0009416 ... B8C770 39670505
    930774 8zeh:B (2.78) BS13 KC1 N/A GO:0009416 ... B8C770 39670505
    930775 8zeh:B (2.78) BS14 CLA N/A GO:0009416 ... B8C770 39670505
    930776 8zeh:C (2.78) BS01 DD6 N/A GO:0009416 ... B5YM25 39670505
    930777 8zeh:C (2.78) BS02 A86 N/A GO:0009416 ... B5YM25 39670505
    930778 8zeh:C (2.78) BS03 A86 N/A GO:0009416 ... B5YM25 39670505
    930779 8zeh:C (2.78) BS04 CLA N/A GO:0009416 ... B5YM25 39670505
    930780 8zeh:C (2.78) BS05 CLA N/A GO:0009416 ... B5YM25 39670505
    930781 8zeh:C (2.78) BS06 KC1 N/A GO:0009416 ... B5YM25 39670505
    930782 8zeh:C (2.78) BS07 CLA N/A GO:0009416 ... B5YM25 39670505
    930783 8zeh:C (2.78) BS08 CLA N/A GO:0009416 ... B5YM25 39670505
    930784 8zeh:C (2.78) BS09 CLA N/A GO:0009416 ... B5YM25 39670505
    930785 8zeh:C (2.78) BS10 CLA N/A GO:0009416 ... B5YM25 39670505
    930786 8zeh:C (2.78) BS11 KC1 N/A GO:0009416 ... B5YM25 39670505
    930787 8zeh:C (2.78) BS12 CLA N/A GO:0009416 ... B5YM25 39670505
    930788 8zeh:C (2.78) BS13 CLA N/A GO:0009416 ... B5YM25 39670505
    930789 8zeh:C (2.78) BS14 CLA N/A GO:0009416 ... B5YM25 39670505
    930790 8zeh:C (2.78) BS15 CLA N/A GO:0009416 ... B5YM25 39670505
    930791 8zeh:C (2.78) BS16 CLA N/A GO:0009416 ... B5YM25 39670505
    930792 8zeh:D (2.78) BS01 A86 N/A GO:0009507 ... B8CEQ3 39670505
    930793 8zeh:D (2.78) BS02 ET4 N/A GO:0009507 ... B8CEQ3 39670505
    930794 8zeh:D (2.78) BS03 A86 N/A GO:0009507 ... B8CEQ3 39670505
    930795 8zeh:D (2.78) BS04 A86 N/A GO:0009507 ... B8CEQ3 39670505
    930796 8zeh:D (2.78) BS05 DD6 N/A GO:0009507 ... B8CEQ3 39670505
    930797 8zeh:D (2.78) BS06 A86 N/A GO:0009507 ... B8CEQ3 39670505
    930798 8zeh:D (2.78) BS07 CLA N/A GO:0009507 ... B8CEQ3 39670505
    930799 8zeh:D (2.78) BS08 CLA N/A GO:0009507 ... B8CEQ3 39670505
    930800 8zeh:D (2.78) BS09 CLA N/A GO:0009507 ... B8CEQ3 39670505

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).