SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    931201 9e3c:J (3.19) BS02 SFG N/A N/A O14744 39793893
    931202 9e4w:A (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931203 9e4w:A (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931204 9e4w:B (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931205 9e4w:B (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931206 9e4w:C (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931207 9e4w:C (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931208 9e4w:C (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931209 9e4w:D (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931210 9e4w:D (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931211 9e4w:E (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931212 9e4w:E (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931213 9e4w:E (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931214 9e4w:F (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931215 9e4w:F (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931216 9e4w:G (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931217 9e4w:G (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931218 9e4w:H (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931219 9e4w:H (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931220 9e4w:I (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931221 9e4w:I (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931222 9e4w:I (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931223 9e4w:J (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931224 9e4w:J (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931225 9e4w:J (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931226 9e4w:K (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931227 9e4w:K (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931228 9e4w:L (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931229 9e4w:L (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931230 9e4w:L (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931231 9e4w:M (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931232 9e4w:M (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931233 9e4w:M (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931234 9e4w:N (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931235 9e4w:N (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931236 9e4w:N (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931237 9e4w:O (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931238 9e4w:O (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931239 9e4w:P (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931240 9e4w:P (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931241 9e4w:Q (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931242 9e4w:Q (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931243 9e4w:Q (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931244 9e4w:R (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931245 9e4w:R (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931246 9e4w:S (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931247 9e4w:S (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931248 9e4w:S (2.08) BS03 4BW N/A N/A B6V2Y3 39803557
    931249 9e4w:T (2.08) BS01 4BW N/A N/A B6V2Y3 39803557
    931250 9e4w:T (2.08) BS02 4BW N/A N/A B6V2Y3 39803557
    931251 9e5d:A (1.36) BS01 GDP N/A N/A P01116 39772605
    931252 9e5d:A (1.36) BS02 A1BEI N/A N/A P01116 39772605
    931253 9e5f:A (1.35) BS01 GDP N/A N/A P01116 39772605
    931254 9e5f:A (1.35) BS02 A1BEJ N/A N/A P01116 39772605
    931255 9e5w:A (1.52) BS01 P5F N/A N/A N/A 39870289
    931256 9e5w:A (1.52) BS02 NAD N/A N/A N/A 39870289
    931257 9e5w:B (1.52) BS01 P5F N/A N/A N/A 39870289
    931258 9e5w:B (1.52) BS02 NAD N/A N/A N/A 39870289
    931259 9e6l:A (3.3) BS01 dna N/A N/A P25454 N/A
    931260 9e6l:A (3.3) BS02 ATP N/A N/A P25454 N/A
    931261 9e6l:B (3.3) BS01 dna N/A N/A P25454 N/A
    931262 9e6l:B (3.3) BS02 ATP N/A N/A P25454 N/A
    931263 9e6l:B (3.3) BS03 ATP N/A N/A P25454 N/A
    931264 9e6l:C (3.3) BS01 dna N/A N/A P25454 N/A
    931265 9e6l:C (3.3) BS02 ATP N/A N/A P25454 N/A
    931266 9e6l:C (3.3) BS03 ATP N/A N/A P25454 N/A
    931267 9e6l:D (3.3) BS01 dna N/A N/A P25454 N/A
    931268 9e6l:D (3.3) BS02 ATP N/A N/A P25454 N/A
    931269 9e6l:D (3.3) BS03 ATP N/A N/A P25454 N/A
    931270 9e6l:E (3.3) BS01 dna N/A N/A P25454 N/A
    931271 9e6l:E (3.3) BS02 ATP N/A N/A P25454 N/A
    931272 9e6l:E (3.3) BS03 ATP N/A N/A P25454 N/A
    931273 9e6l:F (3.3) BS01 dna N/A N/A P25454 N/A
    931274 9e6l:F (3.3) BS02 ATP N/A N/A P25454 N/A
    931275 9e6l:F (3.3) BS03 ATP N/A N/A P25454 N/A
    931276 9e6m:A (2.7) BS01 PYR N/A N/A B4F8P6 N/A
    931277 9e6m:B (2.7) BS01 PYR N/A N/A B4F8P6 N/A
    931278 9e6m:C (2.7) BS01 PYR N/A N/A B4F8P6 N/A
    931279 9e6m:D (2.7) BS01 PYR N/A N/A B4F8P6 N/A
    931280 9e6n:A (2.8) BS01 dna N/A N/A P25454 N/A
    931281 9e6n:A (2.8) BS02 ATP N/A N/A P25454 N/A
    931282 9e6n:B (2.8) BS01 dna N/A N/A P25454 N/A
    931283 9e6n:B (2.8) BS02 ATP N/A N/A P25454 N/A
    931284 9e6n:B (2.8) BS03 ATP N/A N/A P25454 N/A
    931285 9e6n:C (2.8) BS01 dna N/A N/A P25454 N/A
    931286 9e6n:C (2.8) BS02 ATP N/A N/A P25454 N/A
    931287 9e6n:C (2.8) BS03 ATP N/A N/A P25454 N/A
    931288 9e6n:D (2.8) BS01 dna N/A N/A P25454 N/A
    931289 9e6n:D (2.8) BS02 ATP N/A N/A P25454 N/A
    931290 9e6n:D (2.8) BS03 ATP N/A N/A P25454 N/A
    931291 9e6n:E (2.8) BS01 dna N/A N/A P25454 N/A
    931292 9e6n:E (2.8) BS02 ATP N/A N/A P25454 N/A
    931293 9e6n:E (2.8) BS03 ATP N/A N/A P25454 N/A
    931294 9e6n:F (2.8) BS01 dna N/A N/A P25454 N/A
    931295 9e6n:F (2.8) BS02 ATP N/A N/A P25454 N/A
    931296 9e6n:F (2.8) BS03 ATP N/A N/A P25454 N/A
    931297 9e6q:3 (1.95) BS01 rna N/A N/A A3MX58 N/A
    931298 9e6q:AA (1.95) BS01 rna N/A GO:0002181 ... A3MS41 N/A
    931299 9e6q:AB (1.95) BS01 rna N/A GO:0003723 ... A3MWI4 N/A
    931300 9e6q:AC (1.95) BS01 rna N/A GO:0005840 ... A3MWI5 N/A
    931301 9e6q:AD (1.95) BS01 rna N/A GO:0000049 ... A3MXP8 N/A
    931302 9e6q:AD (1.95) BS02 rna N/A GO:0000049 ... A3MXP8 N/A
    931303 9e6q:AE (1.95) BS01 rna N/A GO:0002181 ... A3MWV5 N/A
    931304 9e6q:AF (1.95) BS01 rna N/A GO:0001682 ... A3MTA9 N/A
    931305 9e6q:AG (1.95) BS01 rna N/A GO:0003729 ... A3MXZ7 N/A
    931306 9e6q:AH (1.95) BS01 rna N/A GO:0005840 ... A3MTP8 N/A
    931307 9e6q:AI (1.95) BS01 rna N/A GO:0003735 ... A3MX34 N/A
    931308 9e6q:AJ (1.95) BS01 rna N/A N/A A3MS76 N/A
    931309 9e6q:AK (1.95) BS01 rna N/A N/A A3MS76 N/A
    931310 9e6q:AL (1.95) BS01 rna N/A GO:0003735 ... A3MUZ1 N/A
    931311 9e6q:AM (1.95) BS01 rna N/A GO:0002181 ... A3MWR6 N/A
    931312 9e6q:AN (1.95) BS01 rna N/A GO:0005840 ... A3MXP3 N/A
    931313 9e6q:AO (1.95) BS01 rna N/A GO:0000027 ... A3MSJ3 N/A
    931314 9e6q:AO (1.95) BS02 rna N/A GO:0000027 ... A3MSJ3 N/A
    931315 9e6q:AP (1.95) BS01 rna N/A GO:0003723 ... A3MXZ6 N/A
    931316 9e6q:AQ (1.95) BS01 rna N/A GO:0005840 ... A3MSJ4 N/A
    931317 9e6q:AR (1.95) BS01 rna N/A GO:0005840 ... A3MX77 N/A
    931318 9e6q:AS (1.95) BS01 rna N/A GO:0005840 ... A3MWX9 N/A
    931319 9e6q:AS (1.95) BS02 rna N/A GO:0005840 ... A3MWX9 N/A
    931320 9e6q:AT (1.95) BS01 rna N/A GO:0002181 ... A3MTL6 N/A
    931321 9e6q:AU (1.95) BS01 rna N/A GO:0003735 ... A3MWI6 N/A
    931322 9e6q:AV (1.95) BS01 rna N/A GO:0005840 ... A3MWZ8 N/A
    931323 9e6q:AW (1.95) BS01 rna N/A GO:0005840 ... A3MTA8 N/A
    931324 9e6q:AW (1.95) BS02 ZN N/A GO:0005840 ... A3MTA8 N/A
    931325 9e6q:AX (1.95) BS01 rna N/A GO:0005840 ... A3MTL2 N/A
    931326 9e6q:AY (1.95) BS01 rna N/A GO:0000463 ... A3MU87 N/A
    931327 9e6q:AY (1.95) BS02 rna N/A GO:0000463 ... A3MU87 N/A
    931328 9e6q:AZ (1.95) BS01 rna N/A GO:0005840 ... A3MXZ2 N/A
    931329 9e6q:Aa (1.95) BS01 rna N/A GO:0002181 ... A3MX75 N/A
    931330 9e6q:Ab (1.95) BS01 rna N/A GO:0005840 ... A3MSJ5 N/A
    931331 9e6q:Ac (1.95) BS01 rna N/A GO:0005840 ... A3MV68 N/A
    931332 9e6q:Ad (1.95) BS01 rna N/A GO:0005840 ... A3MY38 N/A
    931333 9e6q:Ad (1.95) BS02 ZN N/A GO:0005840 ... A3MY38 N/A
    931334 9e6q:Ae (1.95) BS01 rna N/A GO:0005840 ... A3MTT1 N/A
    931335 9e6q:Af (1.95) BS01 rna N/A GO:0005840 ... A3MUU4 N/A
    931336 9e6q:Ag (1.95) BS01 rna N/A GO:0005840 ... A3MX99 N/A
    931337 9e6q:Ag (1.95) BS02 ZN N/A GO:0005840 ... A3MX99 N/A
    931338 9e6q:Ah (1.95) BS01 rna N/A N/A A3MUV1 N/A
    931339 9e6q:Ah (1.95) BS02 ZN N/A N/A A3MUV1 N/A
    931340 9e6q:Ai (1.95) BS01 rna N/A GO:0005840 ... A3MUM7 N/A
    931341 9e6q:Ai (1.95) BS02 ZN N/A GO:0005840 ... A3MUM7 N/A
    931342 9e6q:Aj (1.95) BS01 rna N/A GO:0005737 ... A3MTM7 N/A
    931343 9e6q:Ak (1.95) BS01 rna N/A N/A A3MWU0 N/A
    931344 9e6z:A (1.7) BS01 QG7 N/A N/A P22629 39600509
    931345 9e71:AA (2.36) BS01 rna N/A GO:0002181 ... A3MS41 N/A
    931346 9e71:AB (2.36) BS01 rna N/A GO:0003723 ... A3MWI4 N/A
    931347 9e71:AC (2.36) BS01 rna N/A GO:0005840 ... A3MWI5 N/A
    931348 9e71:AD (2.36) BS01 rna N/A GO:0000049 ... A3MXP8 N/A
    931349 9e71:AD (2.36) BS02 rna N/A GO:0000049 ... A3MXP8 N/A
    931350 9e71:AE (2.36) BS01 rna N/A GO:0002181 ... A3MWV5 N/A
    931351 9e71:AF (2.36) BS01 rna N/A GO:0001682 ... A3MTA9 N/A
    931352 9e71:AG (2.36) BS01 rna N/A GO:0003729 ... A3MXZ7 N/A
    931353 9e71:AH (2.36) BS01 rna N/A GO:0005840 ... A3MTP8 N/A
    931354 9e71:AI (2.36) BS01 rna N/A GO:0003735 ... A3MX34 N/A
    931355 9e71:AJ (2.36) BS01 rna N/A GO:0003723 ... A3MS76 N/A
    931356 9e71:AK (2.36) BS01 rna N/A GO:0003723 ... A3MS76 N/A
    931357 9e71:AL (2.36) BS01 rna N/A GO:0003735 ... A3MUZ1 N/A
    931358 9e71:AM (2.36) BS01 rna N/A GO:0002181 ... A3MWR6 N/A
    931359 9e71:AN (2.36) BS01 rna N/A GO:0005840 ... A3MXP3 N/A
    931360 9e71:AN (2.36) BS02 rna N/A GO:0005840 ... A3MXP3 N/A
    931361 9e71:AO (2.36) BS01 rna N/A GO:0000027 ... A3MSJ3 N/A
    931362 9e71:AO (2.36) BS02 rna N/A GO:0000027 ... A3MSJ3 N/A
    931363 9e71:AP (2.36) BS01 rna N/A GO:0003723 ... A3MXZ6 N/A
    931364 9e71:AQ (2.36) BS01 rna N/A GO:0005840 ... A3MSJ4 N/A
    931365 9e71:AR (2.36) BS01 rna N/A GO:0005840 ... A3MX77 N/A
    931366 9e71:AS (2.36) BS01 rna N/A GO:0005840 ... A3MWX9 N/A
    931367 9e71:AS (2.36) BS02 rna N/A GO:0005840 ... A3MWX9 N/A
    931368 9e71:AT (2.36) BS01 rna N/A GO:0002181 ... A3MTL6 N/A
    931369 9e71:AU (2.36) BS01 rna N/A GO:0003735 ... A3MWI6 N/A
    931370 9e71:AV (2.36) BS01 rna N/A GO:0005840 ... A3MWZ8 N/A
    931371 9e71:AW (2.36) BS01 rna N/A GO:0005840 ... A3MTA8 N/A
    931372 9e71:AW (2.36) BS02 ZN N/A GO:0005840 ... A3MTA8 N/A
    931373 9e71:AX (2.36) BS01 rna N/A GO:0005840 ... A3MTL2 N/A
    931374 9e71:AY (2.36) BS01 rna N/A GO:0000463 ... A3MU87 N/A
    931375 9e71:AY (2.36) BS02 rna N/A GO:0000463 ... A3MU87 N/A
    931376 9e71:AZ (2.36) BS01 rna N/A GO:0005840 ... A3MXZ2 N/A
    931377 9e71:Aa (2.36) BS01 rna N/A GO:0002181 ... A3MX75 N/A
    931378 9e71:Ab (2.36) BS01 rna N/A GO:0005840 ... A3MSJ5 N/A
    931379 9e71:Ac (2.36) BS01 rna N/A GO:0005840 ... A3MV68 N/A
    931380 9e71:Ad (2.36) BS01 rna N/A GO:0005840 ... A3MY38 N/A
    931381 9e71:Ad (2.36) BS02 ZN N/A GO:0005840 ... A3MY38 N/A
    931382 9e71:Ae (2.36) BS01 rna N/A GO:0005840 ... A3MTT1 N/A
    931383 9e71:Af (2.36) BS01 rna N/A GO:0005840 ... A3MUU4 N/A
    931384 9e71:Ag (2.36) BS01 rna N/A GO:0005840 ... A3MX99 N/A
    931385 9e71:Ag (2.36) BS02 ZN N/A GO:0005840 ... A3MX99 N/A
    931386 9e71:Ah (2.36) BS01 rna N/A N/A A3MUV1 N/A
    931387 9e71:Ah (2.36) BS02 ZN N/A N/A A3MUV1 N/A
    931388 9e71:Ai (2.36) BS01 rna N/A GO:0005840 ... A3MUM7 N/A
    931389 9e71:Ai (2.36) BS02 ZN N/A GO:0005840 ... A3MUM7 N/A
    931390 9e71:Aj (2.36) BS01 rna N/A GO:0005737 ... A3MTM7 N/A
    931391 9e71:Ak (2.36) BS01 rna N/A N/A A3MWU0 N/A
    931392 9e71:BA (2.36) BS01 rna N/A GO:0005840 ... A3MVE0 N/A
    931393 9e71:BB (2.36) BS01 rna N/A GO:0005840 ... A3MS50 N/A
    931394 9e71:BC (2.36) BS01 rna N/A GO:0003735 ... A3MTL3 N/A
    931395 9e71:BD (2.36) BS01 rna N/A GO:0003735 ... A3MUS9 N/A
    931396 9e71:BE (2.36) BS01 rna N/A GO:0003723 ... A3MWZ7 N/A
    931397 9e71:BF (2.36) BS01 rna N/A GO:0003735 ... A3MU88 N/A
    931398 9e71:BF (2.36) BS02 ZN N/A GO:0003735 ... A3MU88 N/A
    931399 9e71:BG (2.36) BS01 rna N/A GO:0005840 ... A3MUD0 N/A
    931400 9e71:BH (2.36) BS01 rna N/A GO:0003735 ... A3MS29 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).