SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    931401 9e71:BI (2.36) BS01 rna N/A GO:0005840 ... A3MSJ6 N/A
    931402 9e71:BJ (2.36) BS01 rna N/A GO:0005840 ... A3MWY2 N/A
    931403 9e71:BK (2.36) BS01 rna N/A GO:0000462 ... A3MXZ8 N/A
    931404 9e71:BL (2.36) BS01 rna N/A GO:0000049 ... A3MT22 N/A
    931405 9e71:BL (2.36) BS02 peptide N/A GO:0000049 ... A3MT22 N/A
    931406 9e71:BM (2.36) BS01 rna N/A GO:0005840 ... A3MX63 N/A
    931407 9e71:BN (2.36) BS01 rna N/A GO:0005840 ... A3MXZ4 N/A
    931408 9e71:BO (2.36) BS01 rna N/A GO:0005829 ... A3MUT0 N/A
    931409 9e71:BQ (2.36) BS01 rna N/A GO:0003735 ... A3MVD1 N/A
    931410 9e71:BR (2.36) BS01 rna N/A GO:0003735 ... A3MTT7 N/A
    931411 9e71:BR (2.36) BS02 ZN N/A GO:0003735 ... A3MTT7 N/A
    931412 9e71:BS (2.36) BS01 rna N/A GO:0005829 ... A3MS42 N/A
    931413 9e71:BT (2.36) BS01 rna N/A GO:0000028 ... A3MTT6 N/A
    931414 9e71:BU (2.36) BS01 rna N/A GO:0000028 ... A3MUU6 N/A
    931415 9e71:BV (2.36) BS01 rna N/A GO:0005840 ... A3MSX4 N/A
    931416 9e71:BW (2.36) BS01 rna N/A GO:0005840 ... A3MV37 N/A
    931417 9e71:BX (2.36) BS01 rna N/A GO:0003729 ... A3MV49 N/A
    931418 9e71:BX (2.36) BS02 ZN N/A GO:0003729 ... A3MV49 N/A
    931419 9e71:BY (2.36) BS01 rna N/A GO:0005840 ... A3MUV2 N/A
    931420 9e71:BY (2.36) BS02 ZN N/A GO:0005840 ... A3MUV2 N/A
    931421 9e71:BZ (2.36) BS01 rna N/A N/A N/A N/A
    931422 9e71:Ba (2.36) BS01 rna N/A GO:0005840 ... A3MSW3 N/A
    931423 9e71:Bb (2.36) BS01 rna N/A N/A N/A N/A
    931424 9e71:Bc (2.36) BS01 rna N/A N/A A3MY11 N/A
    931425 9e71:Bc (2.36) BS02 ZN N/A N/A A3MY11 N/A
    931426 9e7f:3 (2.53) BS01 rna N/A N/A A3MX58 N/A
    931427 9e7f:AA (2.53) BS01 rna N/A GO:0002181 ... A3MS41 N/A
    931428 9e7f:AB (2.53) BS01 rna N/A GO:0003723 ... A3MWI4 N/A
    931429 9e7f:AC (2.53) BS01 rna N/A GO:0005840 ... A3MWI5 N/A
    931430 9e7f:AD (2.53) BS01 rna N/A GO:0000049 ... A3MXP8 N/A
    931431 9e7f:AD (2.53) BS02 rna N/A GO:0000049 ... A3MXP8 N/A
    931432 9e7f:AE (2.53) BS01 rna N/A GO:0002181 ... A3MWV5 N/A
    931433 9e7f:AF (2.53) BS01 rna N/A GO:0001682 ... A3MTA9 N/A
    931434 9e7f:AG (2.53) BS01 rna N/A GO:0003729 ... A3MXZ7 N/A
    931435 9e7f:AH (2.53) BS01 rna N/A GO:0005840 ... A3MTP8 N/A
    931436 9e7f:AI (2.53) BS01 rna N/A GO:0003735 ... A3MX34 N/A
    931437 9e7f:AI (2.53) BS02 rna N/A GO:0003735 ... A3MX34 N/A
    931438 9e7f:AJ (2.53) BS01 rna N/A GO:0003723 ... A3MS76 N/A
    931439 9e7f:AK (2.53) BS01 rna N/A GO:0003723 ... A3MS76 N/A
    931440 9e7f:AL (2.53) BS01 rna N/A GO:0003735 ... A3MUZ1 N/A
    931441 9e7f:AM (2.53) BS01 rna N/A GO:0002181 ... A3MWR6 N/A
    931442 9e7f:AN (2.53) BS01 rna N/A GO:0005840 ... A3MXP3 N/A
    931443 9e7f:AN (2.53) BS02 rna N/A GO:0005840 ... A3MXP3 N/A
    931444 9e7f:AO (2.53) BS01 rna N/A GO:0000027 ... A3MSJ3 N/A
    931445 9e7f:AO (2.53) BS02 rna N/A GO:0000027 ... A3MSJ3 N/A
    931446 9e7f:AP (2.53) BS01 rna N/A GO:0003723 ... A3MXZ6 N/A
    931447 9e7f:AQ (2.53) BS01 rna N/A GO:0005840 ... A3MSJ4 N/A
    931448 9e7f:AR (2.53) BS01 rna N/A GO:0005840 ... A3MX77 N/A
    931449 9e7f:AS (2.53) BS01 rna N/A GO:0005840 ... A3MWX9 N/A
    931450 9e7f:AS (2.53) BS02 rna N/A GO:0005840 ... A3MWX9 N/A
    931451 9e7f:AT (2.53) BS01 rna N/A GO:0002181 ... A3MTL6 N/A
    931452 9e7f:AU (2.53) BS01 rna N/A GO:0003735 ... A3MWI6 N/A
    931453 9e7f:AV (2.53) BS01 rna N/A GO:0005840 ... A3MWZ8 N/A
    931454 9e7f:AW (2.53) BS01 rna N/A GO:0005840 ... A3MTA8 N/A
    931455 9e7f:AW (2.53) BS02 ZN N/A GO:0005840 ... A3MTA8 N/A
    931456 9e7f:AX (2.53) BS01 rna N/A GO:0005840 ... A3MTL2 N/A
    931457 9e7f:AY (2.53) BS01 rna N/A GO:0000463 ... A3MU87 N/A
    931458 9e7f:AY (2.53) BS02 rna N/A GO:0000463 ... A3MU87 N/A
    931459 9e7f:AZ (2.53) BS01 rna N/A GO:0005840 ... A3MXZ2 N/A
    931460 9e7f:Aa (2.53) BS01 rna N/A GO:0002181 ... A3MX75 N/A
    931461 9e7f:Ab (2.53) BS01 rna N/A GO:0005840 ... A3MSJ5 N/A
    931462 9e7f:Ac (2.53) BS01 rna N/A GO:0005840 ... A3MV68 N/A
    931463 9e7f:Ad (2.53) BS01 rna N/A GO:0005840 ... A3MY38 N/A
    931464 9e7f:Ad (2.53) BS02 ZN N/A GO:0005840 ... A3MY38 N/A
    931465 9e7f:Ae (2.53) BS01 rna N/A GO:0005840 ... A3MTT1 N/A
    931466 9e7f:Af (2.53) BS01 rna N/A GO:0005840 ... A3MUU4 N/A
    931467 9e7f:Ag (2.53) BS01 rna N/A GO:0005840 ... A3MX99 N/A
    931468 9e7f:Ag (2.53) BS02 ZN N/A GO:0005840 ... A3MX99 N/A
    931469 9e7f:Ah (2.53) BS01 rna N/A N/A A3MUV1 N/A
    931470 9e7f:Ah (2.53) BS02 ZN N/A N/A A3MUV1 N/A
    931471 9e7f:Ai (2.53) BS01 rna N/A GO:0005840 ... A3MUM7 N/A
    931472 9e7f:Ai (2.53) BS02 ZN N/A GO:0005840 ... A3MUM7 N/A
    931473 9e7f:Aj (2.53) BS01 rna N/A GO:0005737 ... A3MTM7 N/A
    931474 9e7f:Ak (2.53) BS01 rna N/A N/A A3MWU0 N/A
    931475 9e7f:BA (2.53) BS01 rna N/A GO:0005840 ... A3MVE0 N/A
    931476 9e7f:BB (2.53) BS01 rna N/A GO:0005840 ... A3MS50 N/A
    931477 9e7f:BC (2.53) BS01 rna N/A GO:0003735 ... A3MTL3 N/A
    931478 9e7f:BD (2.53) BS01 rna N/A GO:0003735 ... A3MUS9 N/A
    931479 9e7f:BE (2.53) BS01 rna N/A GO:0003723 ... A3MWZ7 N/A
    931480 9e7f:BF (2.53) BS01 rna N/A GO:0003735 ... A3MU88 N/A
    931481 9e7f:BF (2.53) BS02 ZN N/A GO:0003735 ... A3MU88 N/A
    931482 9e7f:BG (2.53) BS01 rna N/A GO:0005840 ... A3MUD0 N/A
    931483 9e7f:BH (2.53) BS01 rna N/A GO:0003735 ... A3MS29 N/A
    931484 9e7f:BI (2.53) BS01 rna N/A GO:0005840 ... A3MSJ6 N/A
    931485 9e7f:BJ (2.53) BS01 rna N/A GO:0005840 ... A3MWY2 N/A
    931486 9e7f:BK (2.53) BS01 rna N/A N/A A3MXZ8 N/A
    931487 9e7f:BL (2.53) BS01 rna N/A GO:0000049 ... A3MT22 N/A
    931488 9e7f:BL (2.53) BS02 peptide N/A GO:0000049 ... A3MT22 N/A
    931489 9e7f:BM (2.53) BS01 rna N/A GO:0005840 ... A3MX63 N/A
    931490 9e7f:BN (2.53) BS01 rna N/A GO:0005840 ... A3MXZ4 N/A
    931491 9e7f:BO (2.53) BS01 rna N/A GO:0005829 ... A3MUT0 N/A
    931492 9e7f:BQ (2.53) BS01 rna N/A GO:0003735 ... A3MVD1 N/A
    931493 9e7f:BR (2.53) BS01 rna N/A GO:0003735 ... A3MTT7 N/A
    931494 9e7f:BR (2.53) BS02 ZN N/A GO:0003735 ... A3MTT7 N/A
    931495 9e7f:BS (2.53) BS01 rna N/A GO:0005829 ... A3MS42 N/A
    931496 9e7f:BT (2.53) BS01 rna N/A GO:0000028 ... A3MTT6 N/A
    931497 9e7f:BU (2.53) BS01 rna N/A GO:0000028 ... A3MUU6 N/A
    931498 9e7f:BV (2.53) BS01 rna N/A GO:0005840 ... A3MSX4 N/A
    931499 9e7f:BW (2.53) BS01 rna N/A GO:0005840 ... A3MV37 N/A
    931500 9e7f:BX (2.53) BS01 rna N/A GO:0003729 ... A3MV49 N/A
    931501 9e7f:BX (2.53) BS02 ZN N/A GO:0003729 ... A3MV49 N/A
    931502 9e7f:BY (2.53) BS01 rna N/A GO:0005840 ... A3MUV2 N/A
    931503 9e7f:BY (2.53) BS02 ZN N/A GO:0005840 ... A3MUV2 N/A
    931504 9e7f:BZ (2.53) BS01 rna N/A GO:0000028 ... B1Y9V2 N/A
    931505 9e7f:Ba (2.53) BS01 rna N/A GO:0005840 ... A3MSW3 N/A
    931506 9e7f:Bb (2.53) BS01 rna N/A N/A N/A N/A
    931507 9e7f:Bc (2.53) BS01 rna N/A N/A A3MY11 N/A
    931508 9e7f:Bc (2.53) BS02 ZN N/A N/A A3MY11 N/A
    931509 9e83:B (2.07) BS01 VU4 N/A N/A O15393 N/A
    931510 9e8g:A (3.01) BS01 ATP N/A GO:0000502 ... P35998 39574680
    931511 9e8g:A (3.01) BS02 ATP N/A GO:0000502 ... P35998 39574680
    931512 9e8g:B (3.01) BS01 peptide N/A GO:0000502 ... P62191 39574680
    931513 9e8g:B (3.01) BS02 ATP N/A GO:0000502 ... P62191 39574680
    931514 9e8g:B (3.01) BS03 MG N/A GO:0000502 ... P62191 39574680
    931515 9e8g:C (3.01) BS01 ATP N/A GO:0000502 ... P62195 39574680
    931516 9e8g:C (3.01) BS02 ADP N/A GO:0000502 ... P62195 39574680
    931517 9e8g:D (3.01) BS01 peptide N/A GO:0000502 ... P43686 39574680
    931518 9e8g:D (3.01) BS02 ADP N/A GO:0000502 ... P43686 39574680
    931519 9e8g:D (3.01) BS03 ADP N/A GO:0000502 ... P43686 39574680
    931520 9e8g:E (3.01) BS01 ADP N/A GO:0000502 ... P62333 39574680
    931521 9e8g:F (3.01) BS01 ATP N/A GO:0000502 ... P17980 39574680
    931522 9e8g:F (3.01) BS02 MG N/A GO:0000502 ... P17980 39574680
    931523 9e8g:c (3.01) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931524 9e8h:A (2.9) BS01 ATP N/A GO:0000502 ... P35998 39574680
    931525 9e8h:A (2.9) BS02 ATP N/A GO:0000502 ... P35998 39574680
    931526 9e8h:B (2.9) BS01 ATP N/A GO:0000502 ... P62191 39574680
    931527 9e8h:B (2.9) BS02 ATP N/A GO:0000502 ... P62191 39574680
    931528 9e8h:C (2.9) BS01 ADP N/A GO:0000502 ... P62195 39574680
    931529 9e8h:D (2.9) BS01 ATP N/A GO:0000502 ... P43686 39574680
    931530 9e8h:E (2.9) BS01 ATP N/A GO:0000502 ... P62333 39574680
    931531 9e8h:E (2.9) BS02 ATP N/A GO:0000502 ... P62333 39574680
    931532 9e8h:F (2.9) BS01 ATP N/A GO:0000502 ... P17980 39574680
    931533 9e8h:F (2.9) BS02 ATP N/A GO:0000502 ... P17980 39574680
    931534 9e8h:F (2.9) BS03 MG N/A GO:0000502 ... P17980 39574680
    931535 9e8h:c (2.9) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931536 9e8i:A (2.87) BS01 ATP N/A GO:0000502 ... P35998 39574680
    931537 9e8i:A (2.87) BS02 MG N/A GO:0000502 ... P35998 39574680
    931538 9e8i:A (2.87) BS03 ATP N/A GO:0000502 ... P35998 39574680
    931539 9e8i:B (2.87) BS01 ATP N/A GO:0000502 ... P62191 39574680
    931540 9e8i:B (2.87) BS02 ATP N/A GO:0000502 ... P62191 39574680
    931541 9e8i:B (2.87) BS03 MG N/A GO:0000502 ... P62191 39574680
    931542 9e8i:C (2.87) BS01 ADP N/A GO:0000502 ... P62195 39574680
    931543 9e8i:D (2.87) BS01 ATP N/A GO:0000502 ... P43686 39574680
    931544 9e8i:E (2.87) BS01 ATP N/A GO:0000502 ... P62333 39574680
    931545 9e8i:E (2.87) BS02 ATP N/A GO:0000502 ... P62333 39574680
    931546 9e8i:F (2.87) BS01 ATP N/A GO:0000502 ... P17980 39574680
    931547 9e8i:F (2.87) BS02 ATP N/A GO:0000502 ... P17980 39574680
    931548 9e8i:F (2.87) BS03 MG N/A GO:0000502 ... P17980 39574680
    931549 9e8i:c (2.87) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931550 9e8j:A (3.47) BS01 ATP N/A GO:0000502 ... P35998 39574680
    931551 9e8j:A (3.47) BS02 MG N/A GO:0000502 ... P35998 39574680
    931552 9e8j:B (3.47) BS01 peptide N/A GO:0000502 ... P62191 39574680
    931553 9e8j:B (3.47) BS02 ATP N/A GO:0000502 ... P62191 39574680
    931554 9e8j:B (3.47) BS03 ATP N/A GO:0000502 ... P62191 39574680
    931555 9e8j:B (3.47) BS04 MG N/A GO:0000502 ... P62191 39574680
    931556 9e8j:C (3.47) BS01 peptide N/A GO:0000502 ... P62195 39574680
    931557 9e8j:C (3.47) BS02 ATP N/A GO:0000502 ... P62195 39574680
    931558 9e8j:C (3.47) BS03 MG N/A GO:0000502 ... P62195 39574680
    931559 9e8j:D (3.47) BS01 ATP N/A GO:0000502 ... P43686 39574680
    931560 9e8j:D (3.47) BS02 ADP N/A GO:0000502 ... P43686 39574680
    931561 9e8j:E (3.47) BS01 peptide N/A GO:0000502 ... P62333 39574680
    931562 9e8j:E (3.47) BS02 ADP N/A GO:0000502 ... P62333 39574680
    931563 9e8j:F (3.47) BS01 ATP N/A GO:0000502 ... P17980 39574680
    931564 9e8j:F (3.47) BS02 MG N/A GO:0000502 ... P17980 39574680
    931565 9e8j:c (3.47) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931566 9e8k:A (4.08) BS01 ADP N/A GO:0000502 ... P35998 39574680
    931567 9e8k:B (4.08) BS01 ADP N/A GO:0000502 ... P62191 39574680
    931568 9e8k:C (4.08) BS01 ATP N/A GO:0000502 ... P62195 39574680
    931569 9e8k:D (4.08) BS01 peptide N/A GO:0000502 ... P43686 39574680
    931570 9e8k:D (4.08) BS02 ATP N/A GO:0000502 ... P43686 39574680
    931571 9e8k:D (4.08) BS03 ATP N/A GO:0000502 ... P43686 39574680
    931572 9e8k:E (4.08) BS01 peptide N/A GO:0000502 ... P62333 39574680
    931573 9e8k:E (4.08) BS02 ATP N/A GO:0000502 ... P62333 39574680
    931574 9e8k:E (4.08) BS03 ATP N/A GO:0000502 ... P62333 39574680
    931575 9e8k:F (4.08) BS01 peptide N/A GO:0000502 ... P17980 39574680
    931576 9e8k:F (4.08) BS02 ATP N/A GO:0000502 ... P17980 39574680
    931577 9e8k:F (4.08) BS03 ADP N/A GO:0000502 ... P17980 39574680
    931578 9e8k:c (4.08) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931579 9e8l:A (3.59) BS01 peptide N/A GO:0000502 ... P35998 39574680
    931580 9e8l:A (3.59) BS02 ADP N/A GO:0000502 ... P35998 39574680
    931581 9e8l:A (3.59) BS03 ATP N/A GO:0000502 ... P35998 39574680
    931582 9e8l:B (3.59) BS01 ADP N/A GO:0000502 ... P62191 39574680
    931583 9e8l:C (3.59) BS01 ADP N/A GO:0000502 ... P62195 39574680
    931584 9e8l:D (3.59) BS01 ADP N/A GO:0000502 ... P43686 39574680
    931585 9e8l:E (3.59) BS01 peptide N/A GO:0000502 ... P62333 39574680
    931586 9e8l:E (3.59) BS02 ATP N/A GO:0000502 ... P62333 39574680
    931587 9e8l:E (3.59) BS03 MG N/A GO:0000502 ... P62333 39574680
    931588 9e8l:F (3.59) BS01 peptide N/A GO:0000502 ... P17980 39574680
    931589 9e8l:F (3.59) BS02 ATP N/A GO:0000502 ... P17980 39574680
    931590 9e8l:F (3.59) BS03 ATP N/A GO:0000502 ... P17980 39574680
    931591 9e8l:F (3.59) BS04 MG N/A GO:0000502 ... P17980 39574680
    931592 9e8l:c (3.59) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931593 9e8m:A (2.827) BS01 A1BF9 N/A N/A P42336 39763752
    931594 9e8m:B (2.827) BS01 A1BF9 N/A N/A P42336 39763752
    931595 9e8n:A (3.62) BS01 peptide N/A GO:0000502 ... P35998 39574680
    931596 9e8n:A (3.62) BS02 ADP N/A GO:0000502 ... P35998 39574680
    931597 9e8n:A (3.62) BS03 ATP N/A GO:0000502 ... P35998 39574680
    931598 9e8n:B (3.62) BS01 peptide N/A GO:0000502 ... P62191 39574680
    931599 9e8n:B (3.62) BS02 ADP N/A GO:0000502 ... P62191 39574680
    931600 9e8n:C (3.62) BS01 ADP N/A GO:0000502 ... P62195 39574680

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).