SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    931401 8zff:T (2.59) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    931402 8zff:U (2.59) BS01 rna N/A GO:0000028 ... P68679 N/A
    931403 8zff:c (2.59) BS01 rna N/A GO:0000027 ... P60422 N/A
    931404 8zff:c (2.59) BS02 rna N/A GO:0000027 ... P60422 N/A
    931405 8zff:d (2.59) BS01 rna N/A GO:0000027 ... P60438 N/A
    931406 8zff:e (2.59) BS01 rna N/A GO:0001070 ... P60723 N/A
    931407 8zff:f (2.59) BS01 rna N/A GO:0000027 ... P62399 N/A
    931408 8zff:f (2.59) BS02 rna N/A GO:0000027 ... P62399 N/A
    931409 8zff:f (2.59) BS03 rna N/A GO:0000027 ... P62399 N/A
    931410 8zff:g (2.59) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    931411 8zff:h (2.59) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    931412 8zff:i (2.59) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    931413 8zff:j (2.59) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    931414 8zff:j (2.59) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    931415 8zff:k (2.59) BS01 rna N/A GO:0002181 ... P02413 N/A
    931416 8zff:l (2.59) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    931417 8zff:l (2.59) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    931418 8zff:m (2.59) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    931419 8zff:n (2.59) BS01 rna N/A GO:0002181 ... P0C018 N/A
    931420 8zff:n (2.59) BS02 rna N/A GO:0002181 ... P0C018 N/A
    931421 8zff:o (2.59) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    931422 8zff:o (2.59) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    931423 8zff:p (2.59) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    931424 8zff:q (2.59) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    931425 8zff:r (2.59) BS01 rna N/A GO:0002181 ... P61175 N/A
    931426 8zff:s (2.59) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    931427 8zff:t (2.59) BS01 rna N/A GO:0000027 ... P60624 N/A
    931428 8zff:u (2.59) BS01 rna N/A GO:0000027 ... P68919 N/A
    931429 8zff:v (2.59) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    931430 8zff:v (2.59) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    931431 8zff:w (2.59) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    931432 8zff:x (2.59) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    931433 8zff:y (2.59) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    931434 8zff:z (2.59) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    931435 8zfg:0 (2.68) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    931436 8zfg:1 (2.68) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    931437 8zfg:2 (2.68) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    931438 8zfg:3 (2.68) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    931439 8zfg:4 (2.68) BS01 rna N/A GO:0002181 ... P0A7M9 N/A
    931440 8zfg:4 (2.68) BS02 rna N/A GO:0002181 ... P0A7M9 N/A
    931441 8zfg:B (2.68) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    931442 8zfg:C (2.68) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    931443 8zfg:D (2.68) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    931444 8zfg:E (2.68) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    931445 8zfg:F (2.68) BS01 rna N/A GO:0002181 ... P02358 N/A
    931446 8zfg:G (2.68) BS01 rna N/A GO:0000028 ... P02359 N/A
    931447 8zfg:G (2.68) BS02 rna N/A GO:0000028 ... P02359 N/A
    931448 8zfg:H (2.68) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    931449 8zfg:I (2.68) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    931450 8zfg:I (2.68) BS02 rna N/A GO:0002181 ... P0A7X3 N/A
    931451 8zfg:J (2.68) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    931452 8zfg:K (2.68) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    931453 8zfg:L (2.68) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    931454 8zfg:M (2.68) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    931455 8zfg:M (2.68) BS02 rna N/A GO:0000049 ... P0A7S9 N/A
    931456 8zfg:N (2.68) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    931457 8zfg:O (2.68) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    931458 8zfg:O (2.68) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    931459 8zfg:P (2.68) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    931460 8zfg:Q (2.68) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    931461 8zfg:R (2.68) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    931462 8zfg:S (2.68) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    931463 8zfg:T (2.68) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    931464 8zfg:U (2.68) BS01 rna N/A GO:0000028 ... P68679 N/A
    931465 8zfg:c (2.68) BS01 rna N/A GO:0000027 ... P60422 N/A
    931466 8zfg:d (2.68) BS01 rna N/A GO:0000027 ... P60438 N/A
    931467 8zfg:e (2.68) BS01 rna N/A GO:0001070 ... P60723 N/A
    931468 8zfg:f (2.68) BS01 rna N/A GO:0000027 ... P62399 N/A
    931469 8zfg:f (2.68) BS02 rna N/A GO:0000027 ... P62399 N/A
    931470 8zfg:f (2.68) BS03 rna N/A GO:0000027 ... P62399 N/A
    931471 8zfg:g (2.68) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    931472 8zfg:h (2.68) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    931473 8zfg:i (2.68) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    931474 8zfg:j (2.68) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    931475 8zfg:j (2.68) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    931476 8zfg:k (2.68) BS01 rna N/A GO:0002181 ... P02413 N/A
    931477 8zfg:l (2.68) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    931478 8zfg:l (2.68) BS02 rna N/A GO:0000027 ... P0ADY7 N/A
    931479 8zfg:m (2.68) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    931480 8zfg:n (2.68) BS01 rna N/A GO:0002181 ... P0C018 N/A
    931481 8zfg:n (2.68) BS02 rna N/A GO:0002181 ... P0C018 N/A
    931482 8zfg:o (2.68) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    931483 8zfg:o (2.68) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    931484 8zfg:p (2.68) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    931485 8zfg:q (2.68) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    931486 8zfg:r (2.68) BS01 rna N/A GO:0002181 ... P61175 N/A
    931487 8zfg:s (2.68) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    931488 8zfg:t (2.68) BS01 rna N/A GO:0000027 ... P60624 N/A
    931489 8zfg:u (2.68) BS01 rna N/A GO:0000027 ... P68919 N/A
    931490 8zfg:v (2.68) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    931491 8zfg:w (2.68) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    931492 8zfg:x (2.68) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    931493 8zfg:y (2.68) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    931494 8zfg:z (2.68) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    931495 8zfi:0 (2.9) BS01 rna N/A GO:0000027 ... P0A7M2 N/A
    931496 8zfi:1 (2.9) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    931497 8zfi:2 (2.9) BS01 rna N/A GO:0000027 ... P0AG51 N/A
    931498 8zfi:4 (2.9) BS01 rna N/A GO:0000027 ... P0A7N4 N/A
    931499 8zfi:5 (2.9) BS01 rna N/A GO:0000027 ... P0A7N9 N/A
    931500 8zfi:6 (2.9) BS01 rna N/A GO:0002181 ... P0A7P5 N/A
    931501 8zfi:7 (2.9) BS01 rna N/A GO:0002181 ... P0A7Q1 N/A
    931502 8zfi:8 (2.9) BS01 rna N/A GO:0002181 ... P0A7Q6 N/A
    931503 8zfi:B (2.9) BS01 rna N/A GO:0000028 ... P0A7V0 N/A
    931504 8zfi:C (2.9) BS01 rna N/A GO:0000028 ... P0A7V3 N/A
    931505 8zfi:C (2.9) BS02 rna N/A GO:0000028 ... P0A7V3 N/A
    931506 8zfi:D (2.9) BS01 rna N/A GO:0000028 ... P0A7V8 N/A
    931507 8zfi:E (2.9) BS01 rna N/A GO:0000028 ... P0A7W1 N/A
    931508 8zfi:F (2.9) BS01 rna N/A GO:0002181 ... P02358 N/A
    931509 8zfi:G (2.9) BS01 rna N/A GO:0000028 ... P02359 N/A
    931510 8zfi:G (2.9) BS02 rna N/A GO:0000028 ... P02359 N/A
    931511 8zfi:H (2.9) BS01 rna N/A GO:0000028 ... P0A7W7 N/A
    931512 8zfi:I (2.9) BS01 rna N/A GO:0002181 ... P0A7X3 N/A
    931513 8zfi:J (2.9) BS01 rna N/A GO:0000049 ... P0A7R5 N/A
    931514 8zfi:K (2.9) BS01 rna N/A GO:0002181 ... P0A7R9 N/A
    931515 8zfi:L (2.9) BS01 rna N/A GO:0000049 ... P0A7S3 N/A
    931516 8zfi:M (2.9) BS01 rna N/A GO:0000049 ... P0A7S9 N/A
    931517 8zfi:N (2.9) BS01 rna N/A GO:0000028 ... P0AG59 N/A
    931518 8zfi:O (2.9) BS01 rna N/A GO:0000028 ... P0ADZ4 N/A
    931519 8zfi:O (2.9) BS02 rna N/A GO:0000028 ... P0ADZ4 N/A
    931520 8zfi:P (2.9) BS01 rna N/A GO:0000028 ... P0A7T3 N/A
    931521 8zfi:Q (2.9) BS01 rna N/A GO:0000028 ... P0AG63 N/A
    931522 8zfi:R (2.9) BS01 rna N/A GO:0002181 ... P0A7T7 N/A
    931523 8zfi:S (2.9) BS01 rna N/A GO:0002181 ... P0A7U3 N/A
    931524 8zfi:T (2.9) BS01 rna N/A GO:0000028 ... P0A7U7 N/A
    931525 8zfi:U (2.9) BS01 rna N/A GO:0000028 ... P68679 N/A
    931526 8zfi:V (2.9) BS01 rna N/A GO:0003755 ... P0A850 N/A
    931527 8zfi:c (2.9) BS01 rna N/A GO:0000027 ... P60422 N/A
    931528 8zfi:d (2.9) BS01 rna N/A GO:0000027 ... P60438 N/A
    931529 8zfi:e (2.9) BS01 rna N/A GO:0001070 ... P60723 N/A
    931530 8zfi:f (2.9) BS01 rna N/A GO:0000027 ... P62399 N/A
    931531 8zfi:f (2.9) BS02 rna N/A GO:0000027 ... P62399 N/A
    931532 8zfi:f (2.9) BS03 rna N/A GO:0000027 ... P62399 N/A
    931533 8zfi:g (2.9) BS01 rna N/A GO:0000027 ... P0AG55 N/A
    931534 8zfi:h (2.9) BS01 rna N/A GO:0002181 ... P0A7R1 N/A
    931535 8zfi:k (2.9) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    931536 8zfi:l (2.9) BS01 rna N/A GO:0002181 ... P0ADY3 N/A
    931537 8zfi:l (2.9) BS02 rna N/A GO:0002181 ... P0ADY3 N/A
    931538 8zfi:m (2.9) BS01 rna N/A GO:0002181 ... P02413 N/A
    931539 8zfi:n (2.9) BS01 rna N/A GO:0000027 ... P0ADY7 N/A
    931540 8zfi:o (2.9) BS01 rna N/A GO:0000027 ... P0AG44 N/A
    931541 8zfi:p (2.9) BS01 rna N/A GO:0002181 ... P0C018 N/A
    931542 8zfi:p (2.9) BS02 rna N/A GO:0002181 ... P0C018 N/A
    931543 8zfi:q (2.9) BS01 rna N/A GO:0000027 ... P0A7K6 N/A
    931544 8zfi:q (2.9) BS02 rna N/A GO:0000027 ... P0A7K6 N/A
    931545 8zfi:r (2.9) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    931546 8zfi:s (2.9) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    931547 8zfi:t (2.9) BS01 rna N/A GO:0002181 ... P61175 N/A
    931548 8zfi:u (2.9) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    931549 8zfi:v (2.9) BS01 rna N/A GO:0000027 ... P60624 N/A
    931550 8zfi:w (2.9) BS01 rna N/A GO:0000027 ... P68919 N/A
    931551 8zfi:y (2.9) BS01 rna N/A GO:0000027 ... P0A7L8 N/A
    931552 8zfi:y (2.9) BS02 rna N/A GO:0000027 ... P0A7L8 N/A
    931553 8zfi:y (2.9) BS03 rna N/A GO:0000027 ... P0A7L8 N/A
    931554 8zfi:z (2.9) BS01 rna N/A GO:0001510 ... N/A N/A
    931555 8zfk:A (2.64) BS01 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931556 8zfk:A (2.64) BS02 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931557 8zfk:B (2.64) BS01 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931558 8zfk:B (2.64) BS02 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931559 8zfk:C (2.64) BS01 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931560 8zfk:C (2.64) BS02 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931561 8zfk:D (2.64) BS01 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931562 8zfk:D (2.64) BS02 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931563 8zfk:E (2.64) BS01 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931564 8zfk:E (2.64) BS02 A1D8E N/A GO:0004888 ... G5EG88
    P0ABE7    		 39009676
    931565 8zfn:A (2.54) BS01 GW9 N/A GO:0003677 ... P37231 39556436
    931566 8zfn:A (2.54) BS02 PLB N/A GO:0003677 ... P37231 39556436
    931567 8zfn:B (2.54) BS01 GW9 N/A GO:0003677 ... P37231 39556436
    931568 8zfn:B (2.54) BS02 PLB N/A GO:0003677 ... P37231 39556436
    931569 8zfo:A (3.15) BS01 NZA N/A GO:0003677 ... P37231 39556436
    931570 8zfo:B (3.15) BS01 GW9 N/A GO:0003677 ... P37231 39556436
    931571 8zfo:B (3.15) BS02 NZA N/A GO:0003677 ... P37231 39556436
    931572 8zfp:A (2.48) BS01 GW9 N/A GO:0003677 ... P37231 39556436
    931573 8zfp:A (2.48) BS02 241 N/A GO:0003677 ... P37231 39556436
    931574 8zfp:B (2.48) BS01 GW9 N/A GO:0003677 ... P37231 39556436
    931575 8zfp:B (2.48) BS02 241 N/A GO:0003677 ... P37231 39556436
    931576 8zfq:A (2.49) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931577 8zfq:A (2.49) BS02 PLB N/A GO:0003677 ... P37231 39556436
    931578 8zfq:B (2.49) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931579 8zfq:B (2.49) BS02 PLB N/A GO:0003677 ... P37231 39556436
    931580 8zfr:B (2.73) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931581 8zfr:B (2.73) BS02 NZA N/A GO:0003677 ... P37231 39556436
    931582 8zfs:A (2.56) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931583 8zfs:A (2.56) BS02 241 N/A GO:0003677 ... P37231 39556436
    931584 8zfs:B (2.56) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931585 8zfs:B (2.56) BS02 241 N/A GO:0003677 ... P37231 39556436
    931586 8zft:A (3.2) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931587 8zft:A (3.2) BS02 3JX N/A GO:0003677 ... P37231 39556436
    931588 8zft:B (3.2) BS01 EEY N/A GO:0003677 ... P37231 39556436
    931589 8zft:B (3.2) BS02 3JX N/A GO:0003677 ... P37231 39556436
    931590 8zfv:A (2.0) BS01 9F2 N/A GO:0003723 ... P0DTC9 40113149
    931591 8zfv:D (2.0) BS01 9F2 N/A GO:0003723 ... P0DTC9 40113149
    931592 8zfw:A (2.18) BS01 MG N/A GO:0008171 ... A0A077EWA5 N/A
    931593 8zfw:A (2.18) BS02 SAH N/A GO:0008171 ... A0A077EWA5 N/A
    931594 8zfw:B (2.18) BS01 A1LU2 N/A GO:0008171 ... A0A077EWA5 N/A
    931595 8zfw:B (2.18) BS02 MG N/A GO:0008171 ... A0A077EWA5 N/A
    931596 8zfw:B (2.18) BS03 SAH N/A GO:0008171 ... A0A077EWA5 N/A
    931597 8zg8:A (1.744) BS01 ZN N/A GO:0008270 ... Q8LBL5 40841552
    931598 8zg8:A (1.744) BS02 ZN N/A GO:0008270 ... Q8LBL5 40841552
    931599 8zg9:A (1.673) BS01 ZN N/A GO:0008270 ... Q8LBL5 40841552
    931600 8zg9:A (1.673) BS02 ZN N/A GO:0008270 ... Q8LBL5 40841552
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).