SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    931601 9e8n:D (3.62) BS01 ADP N/A GO:0000502 ... P43686 39574680
    931602 9e8n:E (3.62) BS01 peptide N/A GO:0000502 ... P62333 39574680
    931603 9e8n:E (3.62) BS02 ATP N/A GO:0000502 ... P62333 39574680
    931604 9e8n:E (3.62) BS03 MG N/A GO:0000502 ... P62333 39574680
    931605 9e8n:F (3.62) BS01 ATP N/A GO:0000502 ... P17980 39574680
    931606 9e8n:F (3.62) BS02 MG N/A GO:0000502 ... P17980 39574680
    931607 9e8n:c (3.62) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931608 9e8o:A (3.1) BS01 ADP N/A GO:0000502 ... P35998 39574680
    931609 9e8o:B (3.1) BS01 ATP N/A GO:0000502 ... P62191 39574680
    931610 9e8o:C (3.1) BS01 ATP N/A GO:0000502 ... P62195 39574680
    931611 9e8o:C (3.1) BS02 ATP N/A GO:0000502 ... P62195 39574680
    931612 9e8o:D (3.1) BS01 ATP N/A GO:0000502 ... P43686 39574680
    931613 9e8o:D (3.1) BS02 ADP N/A GO:0000502 ... P43686 39574680
    931614 9e8o:E (3.1) BS01 ADP N/A GO:0000502 ... P62333 39574680
    931615 9e8o:F (3.1) BS01 ADP N/A GO:0000502 ... P17980 39574680
    931616 9e8o:c (3.1) BS01 ZN N/A GO:0000502 ... O00487 39574680
    931617 9e8q:A (3.16) BS01 peptide N/A GO:0000502 ... P35998 39574680
    931618 9e8q:A (3.16) BS02 ADP N/A GO:0000502 ... P35998 39574680
    931619 9e8q:B (3.16) BS01 peptide N/A GO:0000502 ... P62191 39574680
    931620 9e8q:B (3.16) BS02 ATP N/A GO:0000502 ... P62191 39574680
    931621 9e8q:C (3.16) BS01 peptide N/A GO:0000502 ... P62195 39574680
    931622 9e8q:C (3.16) BS02 ATP N/A GO:0000502 ... P62195 39574680
    931623 9e8q:C (3.16) BS03 ATP N/A GO:0000502 ... P62195 39574680
    931624 9e8q:C (3.16) BS04 MG N/A GO:0000502 ... P62195 39574680
    931625 9e8q:D (3.16) BS01 ATP N/A GO:0000502 ... P43686 39574680
    931626 9e8q:D (3.16) BS02 ADP N/A GO:0000502 ... P43686 39574680
    931627 9e8q:E (3.16) BS01 peptide N/A GO:0000502 ... P62333 39574680
    931628 9e8q:E (3.16) BS02 ADP N/A GO:0000502 ... P62333 39574680
    931629 9e8q:F (3.16) BS01 ADP N/A GO:0000502 ... P17980 39574680
    931630 9e8q:c (3.16) BS01 peptide N/A GO:0000502 ... O00487 39574680
    931631 9e8q:c (3.16) BS02 ZN N/A GO:0000502 ... O00487 39574680
    931632 9eaf:A (1.41) BS01 peptide N/A N/A A7VSG2 39887002
    931633 9eaf:B (1.41) BS01 peptide N/A N/A A7VSG2 39887002
    931634 9eat:A (1.43) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931635 9eaw:A (2.26) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931636 9eaw:B (2.26) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931637 9ebk:A (2.08007) BS01 HEM N/A N/A N/A N/A
    931638 9ebk:A (2.08007) BS02 HEM N/A N/A N/A N/A
    931639 9ebk:B (2.08007) BS01 HEM N/A N/A N/A N/A
    931640 9ebk:B (2.08007) BS02 HEM N/A N/A N/A N/A
    931641 9ebm:A (1.92) BS01 HEM N/A N/A N/A N/A
    931642 9ebm:B (1.92) BS01 HEM N/A N/A N/A N/A
    931643 9ebr:A (2.3) BS01 FE2 N/A N/A N/A 39899144
    931644 9ebr:A (2.3) BS02 NIO N/A N/A N/A 39899144
    931645 9ebs:E (3.3) BS01 A1A4Y N/A N/A O94782 39886906
    931646 9ebs:E (3.3) BS02 ZN N/A N/A O94782 39886906
    931647 9ebs:E (3.3) BS03 A1BHF N/A N/A O94782 39886906
    931648 9ebz:A (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931649 9ebz:B (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931650 9ebz:C (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931651 9ebz:D (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    931652 9ecn:A (2.0) BS01 F43 N/A N/A Q8THH1 N/A
    931653 9ecn:A (2.0) BS02 F43 N/A N/A Q8THH1 N/A
    931654 9ecn:A (2.0) BS03 TP7 N/A N/A Q8THH1 N/A
    931655 9ecn:A (2.0) BS04 SHT N/A N/A Q8THH1 N/A
    931656 9ecn:B (2.0) BS01 F43 N/A N/A Q8THH1 N/A
    931657 9ecn:B (2.0) BS02 F43 N/A N/A Q8THH1 N/A
    931658 9ecn:B (2.0) BS03 TP7 N/A N/A Q8THH1 N/A
    931659 9ecn:B (2.0) BS04 SHT N/A N/A Q8THH1 N/A
    931660 9ecn:C (2.0) BS01 TP7 N/A N/A Q8THG7 N/A
    931661 9ecn:D (2.0) BS01 SHT N/A N/A Q8THG7 N/A
    931662 9ecn:E (2.0) BS01 F43 N/A N/A Q8THH0 N/A
    931663 9ecn:F (2.0) BS01 F43 N/A N/A Q8THH0 N/A
    931664 9eco:A (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    931665 9eco:A (2.83) BS02 ALF N/A GO:0003677 ... P0ACB0 N/A
    931666 9eco:B (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    931667 9eco:B (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    931668 9eco:B (2.83) BS03 ADP N/A GO:0003677 ... P0ACB0 N/A
    931669 9eco:B (2.83) BS04 ALF N/A GO:0003677 ... P0ACB0 N/A
    931670 9eco:C (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    931671 9eco:C (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    931672 9eco:C (2.83) BS03 ALF N/A GO:0003677 ... P0ACB0 N/A
    931673 9eco:C (2.83) BS04 ADP N/A GO:0003677 ... P0ACB0 N/A
    931674 9eco:D (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    931675 9eco:D (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    931676 9eco:D (2.83) BS03 ADP N/A GO:0003677 ... P0ACB0 N/A
    931677 9eco:E (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    931678 9eco:E (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    931679 9eco:E (2.83) BS03 ALF N/A GO:0003677 ... P0ACB0 N/A
    931680 9eco:E (2.83) BS04 ALF N/A GO:0003677 ... P0ACB0 N/A
    931681 9eco:F (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    931682 9eco:F (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    931683 9ed3:A (2.52) BS01 dna N/A N/A P25454 N/A
    931684 9ed3:A (2.52) BS02 ADP N/A N/A P25454 N/A
    931685 9ed3:A (2.52) BS03 AF3 N/A N/A P25454 N/A
    931686 9ed3:B (2.52) BS01 dna N/A N/A P25454 N/A
    931687 9ed3:B (2.52) BS02 ADP N/A N/A P25454 N/A
    931688 9ed3:B (2.52) BS03 ADP N/A N/A P25454 N/A
    931689 9ed3:B (2.52) BS04 AF3 N/A N/A P25454 N/A
    931690 9ed3:C (2.52) BS01 dna N/A N/A P25454 N/A
    931691 9ed3:C (2.52) BS02 ADP N/A N/A P25454 N/A
    931692 9ed3:C (2.52) BS03 AF3 N/A N/A P25454 N/A
    931693 9ed3:C (2.52) BS04 ADP N/A N/A P25454 N/A
    931694 9ed3:D (2.52) BS01 dna N/A N/A P25454 N/A
    931695 9ed3:D (2.52) BS02 ADP N/A N/A P25454 N/A
    931696 9ed3:D (2.52) BS03 ADP N/A N/A P25454 N/A
    931697 9ed3:D (2.52) BS04 AF3 N/A N/A P25454 N/A
    931698 9ed3:E (2.52) BS01 dna N/A N/A P25454 N/A
    931699 9ed3:E (2.52) BS02 ADP N/A N/A P25454 N/A
    931700 9ed3:E (2.52) BS03 ADP N/A N/A P25454 N/A
    931701 9ed3:E (2.52) BS04 AF3 N/A N/A P25454 N/A
    931702 9ed3:F (2.52) BS01 dna N/A N/A P25454 N/A
    931703 9ed3:F (2.52) BS02 ADP N/A N/A P25454 N/A
    931704 9ed3:F (2.52) BS03 ADP N/A N/A P25454 N/A
    931705 9ed3:F (2.52) BS04 AF3 N/A N/A P25454 N/A
    931706 9edl:A (1.96) BS01 ZN N/A N/A Q5NHF0 39697679
    931707 9edl:B (1.96) BS01 ZN N/A N/A Q5NHF0 39697679
    931708 9edl:B (1.96) BS02 ZN N/A N/A Q5NHF0 39697679
    931709 9edv:A (2.42) BS01 A1BIQ N/A N/A A0A8H6C375 N/A
    931710 9edw:A (2.33) BS01 A1BIP N/A N/A A0A1D8PKB4 N/A
    931711 9edx:A (2.03) BS01 A1BIO N/A N/A A0A8H6C375 N/A
    931712 9edy:A (2.3) BS01 A1BIN N/A N/A A0A8H6C375 N/A
    931713 9eee:A (1.7) BS01 A1BHU N/A N/A Q5RZ08 39848476
    931714 9eee:B (1.7) BS01 A1BHU N/A N/A Q5RZ08 39848476
    931715 9eeg:A (1.7) BS01 A1BHV N/A N/A Q5RZ08 39848476
    931716 9eeg:B (1.7) BS01 A1BHV N/A N/A Q5RZ08 39848476
    931717 9eez:A (1.6) BS01 A1BHT N/A N/A P54829 39605455
    931718 9eez:A (1.6) BS02 A1BHT N/A N/A P54829 39605455
    931719 9ef0:A (3.33) BS01 FMN N/A GO:0003958 ... P00388 N/A
    931720 9ef0:A (3.33) BS02 FAD N/A GO:0003958 ... P00388 N/A
    931721 9efc:A (1.26) BS01 A1BHY N/A N/A F8W4B7 N/A
    931722 9efc:A (1.26) BS02 ZN N/A N/A F8W4B7 N/A
    931723 9efc:B (1.26) BS01 A1BHY N/A N/A F8W4B7 N/A
    931724 9efc:B (1.26) BS02 ZN N/A N/A F8W4B7 N/A
    931725 9efr:A (1.24) BS01 A1BHX N/A N/A F8W4B7 N/A
    931726 9efr:A (1.24) BS02 ZN N/A N/A F8W4B7 N/A
    931727 9efr:B (1.24) BS01 A1BHX N/A N/A F8W4B7 N/A
    931728 9efr:B (1.24) BS02 ZN N/A N/A F8W4B7 N/A
    931729 9efx:A (1.262) BS01 ZN N/A N/A F8W4B7 N/A
    931730 9efx:A (1.262) BS02 A1BHW N/A N/A F8W4B7 N/A
    931731 9efx:B (1.262) BS01 ZN N/A N/A F8W4B7 N/A
    931732 9efx:B (1.262) BS02 A1BHW N/A N/A F8W4B7 N/A
    931733 9efx:C (1.262) BS01 ZN N/A N/A F8W4B7 N/A
    931734 9efx:C (1.262) BS02 A1BHW N/A N/A F8W4B7 N/A
    931735 9egf:A (1.25) BS01 A1BH8 N/A N/A F8W4B7 N/A
    931736 9egf:A (1.25) BS02 ZN N/A N/A F8W4B7 N/A
    931737 9egf:B (1.25) BS01 A1BH8 N/A N/A F8W4B7 N/A
    931738 9egf:B (1.25) BS02 ZN N/A N/A F8W4B7 N/A
    931739 9egr:A (1.62) BS01 A1BH7 N/A N/A P0AEG4 N/A
    931740 9egr:B (1.62) BS01 A1BH7 N/A N/A P0AEG4 N/A
    931741 9egu:A (1.27) BS01 A1BH9 N/A N/A F8W4B7 N/A
    931742 9egu:A (1.27) BS02 ZN N/A N/A F8W4B7 N/A
    931743 9egu:B (1.27) BS01 A1BH9 N/A N/A F8W4B7 N/A
    931744 9egu:B (1.27) BS02 ZN N/A N/A F8W4B7 N/A
    931745 9egv:A (2.0) BS01 ZN N/A N/A Q9BYM8 N/A
    931746 9egv:A (2.0) BS02 ZN N/A N/A Q9BYM8 N/A
    931747 9egv:A (2.0) BS03 ZN N/A N/A Q9BYM8 N/A
    931748 9egv:B (2.0) BS01 ZN N/A N/A Q9BYM8 N/A
    931749 9egv:B (2.0) BS02 ZN N/A N/A Q9BYM8 N/A
    931750 9egv:B (2.0) BS03 ZN N/A N/A Q9BYM8 N/A
    931751 9egw:A (1.78) BS01 ZN N/A N/A Q9BYM8 N/A
    931752 9egw:A (1.78) BS02 ZN N/A N/A Q9BYM8 N/A
    931753 9egw:A (1.78) BS03 ZN N/A N/A Q9BYM8 N/A
    931754 9egw:B (1.78) BS01 ZN N/A N/A Q9BYM8 N/A
    931755 9egw:B (1.78) BS02 ZN N/A N/A Q9BYM8 N/A
    931756 9egw:B (1.78) BS03 ZN N/A N/A Q9BYM8 N/A
    931757 9egx:A (2.9) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931758 9egx:A (2.9) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931759 9egx:A (2.9) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931760 9egx:A (2.9) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 39666822
    931761 9egx:A (2.9) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 39666822
    931762 9egx:B (2.9) BS01 rna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931763 9egx:B (2.9) BS02 dna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931764 9egx:B (2.9) BS03 ZN N/A GO:0000428 ... A0A0B8RVL1 39666822
    931765 9egx:E (2.9) BS01 dna N/A GO:0005634 ... I3LSI7 39666822
    931766 9egx:I (2.9) BS01 ZN N/A GO:0000428 ... P60899 39666822
    931767 9egx:I (2.9) BS02 ZN N/A GO:0000428 ... P60899 39666822
    931768 9egx:J (2.9) BS01 ZN N/A GO:0000428 ... A0A8W4F9W9 39666822
    931769 9egx:L (2.9) BS01 ZN N/A GO:0001054 ... A0A4X1TRS6 39666822
    931770 9egx:Z (2.9) BS01 dna N/A GO:0000122 ... O00267 39666822
    931771 9egx:a (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931772 9egx:a (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931773 9egx:b (2.9) BS01 dna N/A GO:0000786 ... P62799 39666822
    931774 9egx:b (2.9) BS02 dna N/A GO:0000786 ... P62799 39666822
    931775 9egx:c (2.9) BS01 dna N/A GO:0000786 ... P06897 39666822
    931776 9egx:c (2.9) BS02 dna N/A GO:0000786 ... P06897 39666822
    931777 9egx:d (2.9) BS01 dna N/A GO:0000786 ... P02281 39666822
    931778 9egx:d (2.9) BS02 dna N/A GO:0000786 ... P02281 39666822
    931779 9egx:e (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931780 9egx:e (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931781 9egx:f (2.9) BS01 dna N/A GO:0000786 ... P62799 39666822
    931782 9egy:A (2.9) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931783 9egy:A (2.9) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931784 9egy:A (2.9) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931785 9egy:A (2.9) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 39666822
    931786 9egy:A (2.9) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 39666822
    931787 9egy:B (2.9) BS01 rna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931788 9egy:B (2.9) BS02 dna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931789 9egy:B (2.9) BS03 ZN N/A GO:0000428 ... A0A0B8RVL1 39666822
    931790 9egy:E (2.9) BS01 dna N/A GO:0005634 ... I3LSI7 39666822
    931791 9egy:I (2.9) BS01 ZN N/A GO:0000428 ... P60899 39666822
    931792 9egy:I (2.9) BS02 ZN N/A GO:0000428 ... P60899 39666822
    931793 9egy:J (2.9) BS01 ZN N/A GO:0000428 ... A0A8W4F9W9 39666822
    931794 9egy:L (2.9) BS01 ZN N/A GO:0001054 ... A0A4X1TRS6 39666822
    931795 9egy:a (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931796 9egy:a (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931797 9egy:b (2.9) BS01 dna N/A GO:0000786 ... P62799 39666822
    931798 9egy:b (2.9) BS02 dna N/A GO:0000786 ... P62799 39666822
    931799 9egy:c (2.9) BS01 dna N/A GO:0000786 ... P06897 39666822
    931800 9egy:d (2.9) BS01 dna N/A GO:0000786 ... P02281 39666822

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).