SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    931801 9egy:d (2.9) BS02 dna N/A GO:0000786 ... P02281 39666822
    931802 9egy:e (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931803 9egy:e (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931804 9egy:f (2.9) BS01 dna N/A GO:0000786 ... P62799 39666822
    931805 9egz:A (2.9) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931806 9egz:A (2.9) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931807 9egz:A (2.9) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931808 9egz:A (2.9) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 39666822
    931809 9egz:A (2.9) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 39666822
    931810 9egz:B (2.9) BS01 rna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931811 9egz:B (2.9) BS02 dna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931812 9egz:B (2.9) BS03 ZN N/A GO:0000428 ... A0A0B8RVL1 39666822
    931813 9egz:C (2.9) BS01 ZN N/A N/A I3LCH3 39666822
    931814 9egz:E (2.9) BS01 dna N/A GO:0005634 ... I3LSI7 39666822
    931815 9egz:I (2.9) BS01 ZN N/A GO:0000428 ... P60899 39666822
    931816 9egz:I (2.9) BS02 ZN N/A GO:0000428 ... P60899 39666822
    931817 9egz:J (2.9) BS01 ZN N/A GO:0000428 ... A0A8W4F9W9 39666822
    931818 9egz:L (2.9) BS01 ZN N/A GO:0001054 ... A0A4X1TRS6 39666822
    931819 9egz:Y (2.9) BS01 ZN N/A GO:0000122 ... P63272 39666822
    931820 9egz:a (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931821 9egz:a (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931822 9egz:b (2.9) BS01 dna N/A GO:0000786 ... P62799 39666822
    931823 9egz:b (2.9) BS02 dna N/A GO:0000786 ... P62799 39666822
    931824 9egz:c (2.9) BS01 dna N/A GO:0000786 ... P06897 39666822
    931825 9egz:c (2.9) BS02 dna N/A GO:0000786 ... P06897 39666822
    931826 9egz:d (2.9) BS01 dna N/A GO:0000786 ... P02281 39666822
    931827 9egz:d (2.9) BS02 dna N/A GO:0000786 ... P02281 39666822
    931828 9egz:e (2.9) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931829 9egz:e (2.9) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931830 9egz:f (2.9) BS01 dna N/A GO:0000786 ... P62799 39666822
    931831 9egz:f (2.9) BS02 dna N/A GO:0000786 ... P62799 39666822
    931832 9egz:l (2.9) BS01 ZN N/A N/A Q9BYW2 39666822
    931833 9egz:l (2.9) BS02 ZN N/A N/A Q9BYW2 39666822
    931834 9egz:l (2.9) BS03 ZN N/A N/A Q9BYW2 39666822
    931835 9eh0:A (3.6) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931836 9eh0:A (3.6) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931837 9eh0:A (3.6) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931838 9eh0:A (3.6) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 39666822
    931839 9eh0:A (3.6) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 39666822
    931840 9eh0:B (3.6) BS01 rna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931841 9eh0:B (3.6) BS02 dna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931842 9eh0:B (3.6) BS03 ZN N/A GO:0000428 ... A0A0B8RVL1 39666822
    931843 9eh0:C (3.6) BS01 ZN N/A N/A I3LCH3 39666822
    931844 9eh0:E (3.6) BS01 dna N/A GO:0005634 ... I3LSI7 39666822
    931845 9eh0:I (3.6) BS01 ZN N/A GO:0000428 ... P60899 39666822
    931846 9eh0:I (3.6) BS02 ZN N/A GO:0000428 ... P60899 39666822
    931847 9eh0:J (3.6) BS01 ZN N/A GO:0000428 ... A0A8W4F9W9 39666822
    931848 9eh0:L (3.6) BS01 ZN N/A GO:0001054 ... A0A4X1TRS6 39666822
    931849 9eh0:Y (3.6) BS01 ZN N/A GO:0000122 ... P63272 39666822
    931850 9eh0:Z (3.6) BS01 dna N/A GO:0000122 ... O00267 39666822
    931851 9eh0:a (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931852 9eh0:a (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931853 9eh0:b (3.6) BS01 dna N/A GO:0000786 ... P62799 39666822
    931854 9eh0:b (3.6) BS02 dna N/A GO:0000786 ... P62799 39666822
    931855 9eh0:c (3.6) BS01 dna N/A GO:0000786 ... P06897 39666822
    931856 9eh0:c (3.6) BS02 dna N/A GO:0000786 ... P06897 39666822
    931857 9eh0:d (3.6) BS01 dna N/A GO:0000786 ... P02281 39666822
    931858 9eh0:d (3.6) BS02 dna N/A GO:0000786 ... P02281 39666822
    931859 9eh0:e (3.6) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931860 9eh0:e (3.6) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931861 9eh0:f (3.6) BS01 dna N/A GO:0000786 ... P62799 39666822
    931862 9eh0:f (3.6) BS02 dna N/A GO:0000786 ... P62799 39666822
    931863 9eh0:g (3.6) BS01 dna N/A GO:0000786 ... P06897 39666822
    931864 9eh0:g (3.6) BS02 dna N/A GO:0000786 ... P06897 39666822
    931865 9eh0:h (3.6) BS01 dna N/A GO:0000786 ... P02281 39666822
    931866 9eh0:l (3.6) BS01 dna N/A N/A Q9BYW2 39666822
    931867 9eh1:A (3.1) BS01 dna N/A N/A A0A8D1DPV6 39666822
    931868 9eh1:A (3.1) BS02 rna N/A N/A A0A8D1DPV6 39666822
    931869 9eh1:A (3.1) BS03 dna N/A N/A A0A8D1DPV6 39666822
    931870 9eh1:A (3.1) BS04 ZN N/A N/A A0A8D1DPV6 39666822
    931871 9eh1:A (3.1) BS05 MG N/A N/A A0A8D1DPV6 39666822
    931872 9eh1:B (3.1) BS01 rna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931873 9eh1:B (3.1) BS02 dna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931874 9eh1:B (3.1) BS03 ZN N/A GO:0000428 ... A0A0B8RVL1 39666822
    931875 9eh1:C (3.1) BS01 ZN N/A N/A I3LCH3 39666822
    931876 9eh1:E (3.1) BS01 dna N/A GO:0005634 ... I3LSI7 39666822
    931877 9eh1:I (3.1) BS01 ZN N/A GO:0000428 ... P60899 39666822
    931878 9eh1:I (3.1) BS02 ZN N/A GO:0000428 ... P60899 39666822
    931879 9eh1:J (3.1) BS01 ZN N/A N/A A0A8W4F9W9 39666822
    931880 9eh1:L (3.1) BS01 ZN N/A N/A A0A4X1TRS6 39666822
    931881 9eh1:Y (3.1) BS01 ZN N/A GO:0000122 ... P63272 39666822
    931882 9eh1:a (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931883 9eh1:a (3.1) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931884 9eh1:b (3.1) BS01 dna N/A N/A P62799 39666822
    931885 9eh1:b (3.1) BS02 dna N/A N/A P62799 39666822
    931886 9eh1:c (3.1) BS01 dna N/A GO:0000786 ... P06897 39666822
    931887 9eh1:c (3.1) BS02 dna N/A GO:0000786 ... P06897 39666822
    931888 9eh1:d (3.1) BS01 dna N/A GO:0000786 ... P02281 39666822
    931889 9eh1:d (3.1) BS02 dna N/A GO:0000786 ... P02281 39666822
    931890 9eh1:e (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931891 9eh1:e (3.1) BS02 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931892 9eh1:f (3.1) BS01 dna N/A N/A P62799 39666822
    931893 9eh1:f (3.1) BS02 dna N/A N/A P62799 39666822
    931894 9eh1:g (3.1) BS01 dna N/A GO:0000786 ... P06897 39666822
    931895 9eh1:g (3.1) BS02 dna N/A GO:0000786 ... P06897 39666822
    931896 9eh1:h (3.1) BS01 dna N/A GO:0000786 ... P02281 39666822
    931897 9eh1:l (3.1) BS01 dna N/A N/A Q9BYW2 39666822
    931898 9eh2:A (3.1) BS01 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931899 9eh2:A (3.1) BS02 rna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931900 9eh2:A (3.1) BS03 dna N/A GO:0000428 ... A0A7M4DUC2 39666822
    931901 9eh2:A (3.1) BS04 ZN N/A GO:0000428 ... A0A7M4DUC2 39666822
    931902 9eh2:A (3.1) BS05 MG N/A GO:0000428 ... A0A7M4DUC2 39666822
    931903 9eh2:B (3.1) BS01 rna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931904 9eh2:B (3.1) BS02 dna N/A GO:0000428 ... A0A0B8RVL1 39666822
    931905 9eh2:B (3.1) BS03 ZN N/A GO:0000428 ... A0A0B8RVL1 39666822
    931906 9eh2:I (3.1) BS01 ZN N/A GO:0000428 ... P60899 39666822
    931907 9eh2:I (3.1) BS02 ZN N/A GO:0000428 ... P60899 39666822
    931908 9eh2:J (3.1) BS01 ZN N/A GO:0000428 ... A0A8W4F9W9 39666822
    931909 9eh2:L (3.1) BS01 ZN N/A GO:0001054 ... A0A4X1TRS6 39666822
    931910 9eh2:M (3.1) BS01 peptide N/A GO:0001825 ... Q7KZ85 39666822
    931911 9eh2:Y (3.1) BS01 ZN N/A GO:0000122 ... P63272 39666822
    931912 9eh2:a (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 39666822
    931913 9eh2:b (3.1) BS01 dna N/A GO:0000786 ... P62799 39666822
    931914 9eh2:b (3.1) BS02 dna N/A GO:0000786 ... P62799 39666822
    931915 9eh2:x (3.1) BS01 dna N/A GO:0003723 ... Q9Y5B9 39666822
    931916 9eh2:y (3.1) BS01 dna N/A GO:0003677 ... Q08945 39666822
    931917 9eh2:y (3.1) BS02 dna N/A GO:0003677 ... Q08945 39666822
    931918 9eh5:A (1.97) BS01 OEX N/A N/A P16033 39922494
    931919 9eh5:A (1.97) BS02 FE2 N/A N/A P16033 39922494
    931920 9eh5:A (1.97) BS03 CLA N/A N/A P16033 39922494
    931921 9eh5:A (1.97) BS04 CLA N/A N/A P16033 39922494
    931922 9eh5:A (1.97) BS05 PHO N/A N/A P16033 39922494
    931923 9eh5:A (1.97) BS06 CLA N/A N/A P16033 39922494
    931924 9eh5:A (1.97) BS07 BCT N/A N/A P16033 39922494
    931925 9eh5:A (1.97) BS08 CLA N/A N/A P16033 39922494
    931926 9eh5:A (1.97) BS09 CLA N/A N/A P16033 39922494
    931927 9eh5:A (1.97) BS10 PHO N/A N/A P16033 39922494
    931928 9eh5:B (1.97) BS01 CLA N/A N/A P05429 39922494
    931929 9eh5:B (1.97) BS02 CLA N/A N/A P05429 39922494
    931930 9eh5:B (1.97) BS03 CLA N/A N/A P05429 39922494
    931931 9eh5:B (1.97) BS04 CLA N/A N/A P05429 39922494
    931932 9eh5:B (1.97) BS05 CLA N/A N/A P05429 39922494
    931933 9eh5:B (1.97) BS06 CLA N/A N/A P05429 39922494
    931934 9eh5:B (1.97) BS07 CLA N/A N/A P05429 39922494
    931935 9eh5:B (1.97) BS08 CLA N/A N/A P05429 39922494
    931936 9eh5:B (1.97) BS09 CLA N/A N/A P05429 39922494
    931937 9eh5:B (1.97) BS10 CLA N/A N/A P05429 39922494
    931938 9eh5:B (1.97) BS11 CLA N/A N/A P05429 39922494
    931939 9eh5:B (1.97) BS12 CLA N/A N/A P05429 39922494
    931940 9eh5:B (1.97) BS13 CLA N/A N/A P05429 39922494
    931941 9eh5:B (1.97) BS14 CLA N/A N/A P05429 39922494
    931942 9eh5:B (1.97) BS15 CLA N/A N/A P05429 39922494
    931943 9eh5:B (1.97) BS16 CLA N/A N/A P05429 39922494
    931944 9eh5:C (1.97) BS01 OEX N/A N/A P09193 39922494
    931945 9eh5:C (1.97) BS02 CLA N/A N/A P09193 39922494
    931946 9eh5:C (1.97) BS03 CLA N/A N/A P09193 39922494
    931947 9eh5:C (1.97) BS04 CLA N/A N/A P09193 39922494
    931948 9eh5:C (1.97) BS05 CLA N/A N/A P09193 39922494
    931949 9eh5:C (1.97) BS06 CLA N/A N/A P09193 39922494
    931950 9eh5:C (1.97) BS07 CLA N/A N/A P09193 39922494
    931951 9eh5:C (1.97) BS08 CLA N/A N/A P09193 39922494
    931952 9eh5:C (1.97) BS09 CLA N/A N/A P09193 39922494
    931953 9eh5:C (1.97) BS10 CLA N/A N/A P09193 39922494
    931954 9eh5:C (1.97) BS11 CLA N/A N/A P09193 39922494
    931955 9eh5:C (1.97) BS12 CLA N/A N/A P09193 39922494
    931956 9eh5:C (1.97) BS13 CLA N/A N/A P09193 39922494
    931957 9eh5:C (1.97) BS14 CLA N/A N/A P09193 39922494
    931958 9eh5:D (1.97) BS01 FE2 N/A N/A P09192 39922494
    931959 9eh5:D (1.97) BS02 CLA N/A N/A P09192 39922494
    931960 9eh5:D (1.97) BS03 PHO N/A N/A P09192 39922494
    931961 9eh5:D (1.97) BS04 BCT N/A N/A P09192 39922494
    931962 9eh5:D (1.97) BS05 CLA N/A N/A P09192 39922494
    931963 9eh5:D (1.97) BS06 CLA N/A N/A P09192 39922494
    931964 9eh5:D (1.97) BS07 PHO N/A N/A P09192 39922494
    931965 9eh5:D (1.97) BS08 CLA N/A N/A P09192 39922494
    931966 9eh5:D (1.97) BS09 CLA N/A N/A P09192 39922494
    931967 9eh5:E (1.97) BS01 HEM N/A N/A P09190 39922494
    931968 9eh5:F (1.97) BS01 HEM N/A N/A P09191 39922494
    931969 9eh5:H (1.97) BS01 CLA N/A N/A P14835 39922494
    931970 9eh5:H (1.97) BS02 CLA N/A N/A P14835 39922494
    931971 9eh5:H (1.97) BS03 CLA N/A N/A P14835 39922494
    931972 9eh5:H (1.97) BS04 RRX N/A N/A P14835 39922494
    931973 9eh5:I (1.97) BS01 CLA N/A N/A Q54697 39922494
    931974 9eh5:K (1.97) BS01 CLA N/A N/A P15819 39922494
    931975 9eh5:K (1.97) BS02 CLA N/A N/A P15819 39922494
    931976 9eh5:K (1.97) BS03 CA N/A N/A P15819 39922494
    931977 9eh5:M (1.97) BS01 CLA N/A N/A P72701 39922494
    931978 9eh5:U (1.97) BS01 CA N/A N/A Q55332 39922494
    931979 9eh5:V (1.97) BS01 HEM N/A N/A Q55013 39922494
    931980 9eh5:V (1.97) BS02 CA N/A N/A Q55013 39922494
    931981 9eh5:X (1.97) BS01 CLA N/A N/A P72575 39922494
    931982 9eh5:Z (1.97) BS01 CLA N/A N/A P73528 39922494
    931983 9eh5:a (1.97) BS01 OEX N/A N/A P16033 39922494
    931984 9eh5:a (1.97) BS02 FE2 N/A N/A P16033 39922494
    931985 9eh5:a (1.97) BS03 CLA N/A N/A P16033 39922494
    931986 9eh5:a (1.97) BS04 CLA N/A N/A P16033 39922494
    931987 9eh5:a (1.97) BS05 PHO N/A N/A P16033 39922494
    931988 9eh5:a (1.97) BS06 CLA N/A N/A P16033 39922494
    931989 9eh5:a (1.97) BS07 BCT N/A N/A P16033 39922494
    931990 9eh5:a (1.97) BS08 CLA N/A N/A P16033 39922494
    931991 9eh5:a (1.97) BS09 CLA N/A N/A P16033 39922494
    931992 9eh5:a (1.97) BS10 PHO N/A N/A P16033 39922494
    931993 9eh5:b (1.97) BS01 CLA N/A N/A P05429 39922494
    931994 9eh5:b (1.97) BS02 CLA N/A N/A P05429 39922494
    931995 9eh5:b (1.97) BS03 CLA N/A N/A P05429 39922494
    931996 9eh5:b (1.97) BS04 CLA N/A N/A P05429 39922494
    931997 9eh5:b (1.97) BS05 CLA N/A N/A P05429 39922494
    931998 9eh5:b (1.97) BS06 CLA N/A N/A P05429 39922494
    931999 9eh5:b (1.97) BS07 CLA N/A N/A P05429 39922494
    932000 9eh5:b (1.97) BS08 CLA N/A N/A P05429 39922494

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).