SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    931801 8zgy:LN (2.8) BS02 rna N/A GO:0002181 ... Q12690 N/A
    931802 8zgy:LO (2.8) BS01 rna N/A GO:0000027 ... P36105 N/A
    931803 8zgy:LP (2.8) BS01 rna N/A GO:0000470 ... P05748 N/A
    931804 8zgy:LP (2.8) BS02 rna N/A GO:0000470 ... P05748 N/A
    931805 8zgy:LQ (2.8) BS01 rna N/A GO:0000470 ... P26784 N/A
    931806 8zgy:LR (2.8) BS01 rna N/A GO:0000448 ... P05740 N/A
    931807 8zgy:LR (2.8) BS02 rna N/A GO:0000448 ... P05740 N/A
    931808 8zgy:LS (2.8) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    931809 8zgy:LT (2.8) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    931810 8zgy:LT (2.8) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    931811 8zgy:LU (2.8) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    931812 8zgy:LU (2.8) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    931813 8zgy:LV (2.8) BS01 rna N/A GO:0002181 ... Q02753 N/A
    931814 8zgy:LV (2.8) BS02 rna N/A GO:0002181 ... Q02753 N/A
    931815 8zgy:LW (2.8) BS01 rna N/A GO:0003735 ... P05749 N/A
    931816 8zgy:LX (2.8) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    931817 8zgy:LX (2.8) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    931818 8zgy:LY (2.8) BS01 rna N/A GO:0003735 ... P04449 N/A
    931819 8zgy:LZ (2.8) BS01 rna N/A GO:0003735 ... P04456 N/A
    931820 8zgy:LZ (2.8) BS02 rna N/A GO:0003735 ... P04456 N/A
    931821 8zgy:La (2.8) BS01 rna N/A GO:0002181 ... P05743 N/A
    931822 8zgy:La (2.8) BS02 rna N/A GO:0002181 ... P05743 N/A
    931823 8zgy:Lb (2.8) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    931824 8zgy:Lc (2.8) BS01 rna N/A GO:0002181 ... P02406 N/A
    931825 8zgy:Ld (2.8) BS01 rna N/A GO:0002181 ... P05747 N/A
    931826 8zgy:Le (2.8) BS01 rna N/A GO:0002181 ... P14120 N/A
    931827 8zgy:Lf (2.8) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    931828 8zgy:Lg (2.8) BS01 rna N/A GO:0002181 ... P38061 N/A
    931829 8zgy:Lh (2.8) BS01 rna N/A GO:0000027 ... P05744 N/A
    931830 8zgy:Li (2.8) BS01 rna N/A GO:0002181 ... P87262 N/A
    931831 8zgy:Lj (2.8) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    931832 8zgy:Lj (2.8) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    931833 8zgy:Lk (2.8) BS01 rna N/A GO:0000470 ... P05745 N/A
    931834 8zgy:Ll (2.8) BS01 rna N/A GO:0000448 ... P49166 N/A
    931835 8zgy:Ll (2.8) BS02 rna N/A GO:0000448 ... P49166 N/A
    931836 8zgy:Lm (2.8) BS01 rna N/A GO:0002181 ... P49167 N/A
    931837 8zgy:Ln (2.8) BS01 rna N/A GO:0002181 ... P04650 N/A
    931838 8zgy:Ln (2.8) BS02 rna N/A GO:0002181 ... P04650 N/A
    931839 8zgy:Lo (2.8) BS01 rna N/A GO:0003735 ... P0CH08 N/A
    931840 8zgy:Lq (2.8) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    931841 8zgy:Lr (2.8) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    931842 8zgy:SA (2.8) BS01 rna N/A GO:0000054 ... P05750 N/A
    931843 8zgy:SB (2.8) BS01 rna N/A GO:0000054 ... P26783 N/A
    931844 8zgy:SC (2.8) BS01 rna N/A N/A Q08745 N/A
    931845 8zgy:SD (2.8) BS01 rna N/A GO:0003735 ... P48589 N/A
    931846 8zgy:SE (2.8) BS01 rna N/A GO:0003723 ... Q01855 N/A
    931847 8zgy:SF (2.8) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    931848 8zgy:SG (2.8) BS01 rna N/A GO:0000028 ... P02407 N/A
    931849 8zgy:SH (2.8) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    931850 8zgy:SI (2.8) BS01 rna N/A GO:0000054 ... P07280 N/A
    931851 8zgy:SJ (2.8) BS01 rna N/A GO:0003723 ... P38701 N/A
    931852 8zgy:SK (2.8) BS01 rna N/A N/A Q3E792 N/A
    931853 8zgy:SL (2.8) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    931854 8zgy:SM (2.8) BS01 rna N/A GO:0002181 ... P41057 N/A
    931855 8zgy:SN (2.8) BS01 rna N/A GO:0003735 ... P05759 N/A
    931856 8zgy:SO (2.8) BS01 rna N/A GO:0001965 ... P38011 N/A
    931857 8zgy:SP (2.8) BS01 rna N/A GO:0003735 ... P32905 N/A
    931858 8zgy:SQ (2.8) BS01 rna N/A GO:0000462 ... P33442 N/A
    931859 8zgy:SQ (2.8) BS02 rna N/A GO:0000462 ... P33442 N/A
    931860 8zgy:SR (2.8) BS01 rna N/A GO:0003723 ... P25443 N/A
    931861 8zgy:SS (2.8) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    931862 8zgy:ST (2.8) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    931863 8zgy:SU (2.8) BS01 rna N/A GO:0002181 ... P26786 N/A
    931864 8zgy:SV (2.8) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    931865 8zgy:SW (2.8) BS01 rna N/A GO:0000462 ... O13516 N/A
    931866 8zgy:SX (2.8) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    931867 8zgy:SY (2.8) BS01 rna N/A GO:0000462 ... P05756 N/A
    931868 8zgy:SY (2.8) BS02 rna N/A GO:0000462 ... P05756 N/A
    931869 8zgy:SZ (2.8) BS01 rna N/A GO:0000028 ... P39516 N/A
    931870 8zgy:Sa (2.8) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    931871 8zgy:Sb (2.8) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    931872 8zgy:Sc (2.8) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    931873 8zgy:Sd (2.8) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    931874 8zgy:Se (2.8) BS01 rna N/A GO:0003735 ... P39939 N/A
    931875 8zgy:Sf (2.8) BS01 rna N/A GO:0000028 ... P35997 N/A
    931876 8zgy:Sg (2.8) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    931877 8zh3:LD (2.7) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    931878 8zh3:LD (2.7) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    931879 8zh3:LE (2.7) BS01 rna N/A GO:0000027 ... P14126 N/A
    931880 8zh3:LF (2.7) BS01 rna N/A GO:0002181 ... P10664 N/A
    931881 8zh3:LF (2.7) BS02 rna N/A GO:0002181 ... P10664 N/A
    931882 8zh3:LG (2.7) BS01 rna N/A GO:0000027 ... P26321 N/A
    931883 8zh3:LG (2.7) BS02 rna N/A GO:0000027 ... P26321 N/A
    931884 8zh3:LH (2.7) BS01 rna N/A GO:0000027 ... P05739 N/A
    931885 8zh3:LI (2.7) BS01 rna N/A GO:0000463 ... P05737 N/A
    931886 8zh3:LI (2.7) BS02 rna N/A GO:0000463 ... P05737 N/A
    931887 8zh3:LJ (2.7) BS01 rna N/A GO:0000470 ... P17076 N/A
    931888 8zh3:LJ (2.7) BS02 rna N/A GO:0000470 ... P17076 N/A
    931889 8zh3:LK (2.7) BS01 rna N/A GO:0002181 ... P05738 N/A
    931890 8zh3:LL (2.7) BS01 rna N/A GO:0000027 ... P41805 N/A
    931891 8zh3:LL (2.7) BS02 rna N/A GO:0000027 ... P41805 N/A
    931892 8zh3:LL (2.7) BS03 rna N/A GO:0000027 ... P41805 N/A
    931893 8zh3:LM (2.7) BS01 rna N/A GO:0000027 ... Q3E757 N/A
    931894 8zh3:LM (2.7) BS02 rna N/A GO:0000027 ... Q3E757 N/A
    931895 8zh3:LN (2.7) BS01 rna N/A GO:0002181 ... Q12690 N/A
    931896 8zh3:LN (2.7) BS02 rna N/A GO:0002181 ... Q12690 N/A
    931897 8zh3:LO (2.7) BS01 rna N/A GO:0000027 ... P36105 N/A
    931898 8zh3:LP (2.7) BS01 rna N/A GO:0000470 ... P05748 N/A
    931899 8zh3:LP (2.7) BS02 rna N/A GO:0000470 ... P05748 N/A
    931900 8zh3:LQ (2.7) BS01 rna N/A GO:0000470 ... P26784 N/A
    931901 8zh3:LR (2.7) BS01 rna N/A GO:0000448 ... P05740 N/A
    931902 8zh3:LR (2.7) BS02 rna N/A GO:0000448 ... P05740 N/A
    931903 8zh3:LS (2.7) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    931904 8zh3:LT (2.7) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    931905 8zh3:LT (2.7) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    931906 8zh3:LU (2.7) BS01 rna N/A GO:0002181 ... P0CX23 N/A
    931907 8zh3:LU (2.7) BS02 rna N/A GO:0002181 ... P0CX23 N/A
    931908 8zh3:LV (2.7) BS01 rna N/A GO:0002181 ... Q02753 N/A
    931909 8zh3:LV (2.7) BS02 rna N/A GO:0002181 ... Q02753 N/A
    931910 8zh3:LW (2.7) BS01 rna N/A GO:0003735 ... P05749 N/A
    931911 8zh3:LX (2.7) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    931912 8zh3:LX (2.7) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    931913 8zh3:LY (2.7) BS01 rna N/A GO:0003735 ... P04449 N/A
    931914 8zh3:LZ (2.7) BS01 rna N/A GO:0003735 ... P04456 N/A
    931915 8zh3:LZ (2.7) BS02 rna N/A GO:0003735 ... P04456 N/A
    931916 8zh3:La (2.7) BS01 rna N/A GO:0002181 ... P05743 N/A
    931917 8zh3:La (2.7) BS02 rna N/A GO:0002181 ... P05743 N/A
    931918 8zh3:Lb (2.7) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    931919 8zh3:Lc (2.7) BS01 rna N/A GO:0002181 ... P02406 N/A
    931920 8zh3:Ld (2.7) BS01 rna N/A GO:0002181 ... P05747 N/A
    931921 8zh3:Le (2.7) BS01 rna N/A GO:0002181 ... P14120 N/A
    931922 8zh3:Lf (2.7) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    931923 8zh3:Lg (2.7) BS01 rna N/A GO:0002181 ... P38061 N/A
    931924 8zh3:Lh (2.7) BS01 rna N/A GO:0000027 ... P05744 N/A
    931925 8zh3:Li (2.7) BS01 rna N/A GO:0002181 ... P87262 N/A
    931926 8zh3:Lj (2.7) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    931927 8zh3:Lj (2.7) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    931928 8zh3:Lk (2.7) BS01 rna N/A GO:0000470 ... P05745 N/A
    931929 8zh3:Ll (2.7) BS01 rna N/A GO:0000448 ... P49166 N/A
    931930 8zh3:Ll (2.7) BS02 rna N/A GO:0000448 ... P49166 N/A
    931931 8zh3:Lm (2.7) BS01 rna N/A GO:0002181 ... P49167 N/A
    931932 8zh3:Ln (2.7) BS01 rna N/A GO:0002181 ... P04650 N/A
    931933 8zh3:Ln (2.7) BS02 rna N/A GO:0002181 ... P04650 N/A
    931934 8zh3:Lo (2.7) BS01 rna N/A GO:0003735 ... P0CH08 N/A
    931935 8zh3:Lq (2.7) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    931936 8zh3:Lq (2.7) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    931937 8zh3:Lr (2.7) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    931938 8zh3:SA (2.7) BS01 rna N/A GO:0000054 ... P05750 N/A
    931939 8zh3:SB (2.7) BS01 rna N/A GO:0000054 ... P26783 N/A
    931940 8zh3:SC (2.7) BS01 rna N/A N/A Q08745 N/A
    931941 8zh3:SD (2.7) BS01 rna N/A GO:0003735 ... P48589 N/A
    931942 8zh3:SE (2.7) BS01 rna N/A GO:0003723 ... Q01855 N/A
    931943 8zh3:SF (2.7) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    931944 8zh3:SG (2.7) BS01 rna N/A GO:0000028 ... P02407 N/A
    931945 8zh3:SH (2.7) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    931946 8zh3:SI (2.7) BS01 rna N/A GO:0000054 ... P07280 N/A
    931947 8zh3:SJ (2.7) BS01 rna N/A GO:0003723 ... P38701 N/A
    931948 8zh3:SK (2.7) BS01 rna N/A N/A Q3E792 N/A
    931949 8zh3:SL (2.7) BS01 rna N/A GO:0000028 ... Q3E7X9 N/A
    931950 8zh3:SM (2.7) BS01 rna N/A GO:0002181 ... P41057 N/A
    931951 8zh3:SN (2.7) BS01 rna N/A GO:0003735 ... P05759 N/A
    931952 8zh3:SO (2.7) BS01 rna N/A GO:0001965 ... P38011 N/A
    931953 8zh3:SP (2.7) BS01 rna N/A GO:0003735 ... P32905 N/A
    931954 8zh3:SQ (2.7) BS01 rna N/A GO:0000462 ... P33442 N/A
    931955 8zh3:SQ (2.7) BS02 rna N/A GO:0000462 ... P33442 N/A
    931956 8zh3:SR (2.7) BS01 rna N/A GO:0003723 ... P25443 N/A
    931957 8zh3:SS (2.7) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    931958 8zh3:ST (2.7) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    931959 8zh3:SU (2.7) BS01 rna N/A GO:0002181 ... P26786 N/A
    931960 8zh3:SV (2.7) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    931961 8zh3:SV (2.7) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    931962 8zh3:SW (2.7) BS01 rna N/A GO:0000462 ... O13516 N/A
    931963 8zh3:SX (2.7) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    931964 8zh3:SY (2.7) BS01 rna N/A GO:0000462 ... P05756 N/A
    931965 8zh3:SY (2.7) BS02 rna N/A GO:0000462 ... P05756 N/A
    931966 8zh3:SZ (2.7) BS01 rna N/A GO:0000028 ... P39516 N/A
    931967 8zh3:Sb (2.7) BS01 rna N/A GO:0002181 ... P0C0W1 N/A
    931968 8zh3:Sc (2.7) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    931969 8zh3:Sc (2.7) BS02 rna N/A GO:0000462 ... P0CX29 N/A
    931970 8zh3:Sd (2.7) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    931971 8zh3:Se (2.7) BS01 rna N/A GO:0003735 ... P39939 N/A
    931972 8zh3:Sf (2.7) BS01 rna N/A GO:0000028 ... P35997 N/A
    931973 8zh3:Sg (2.7) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    931974 8zh4:A (1.82) BS01 A1L1V N/A GO:0003676 ... P12497 38942126
    931975 8zh8:R (3.19) BS01 peptide N/A GO:0004930 ... Q96P65 38897996
    931976 8zh9:C (2.4) BS01 dna N/A GO:0003700 ... A0A5G2QTN4 40267997
    931977 8zh9:C (2.4) BS02 dna N/A GO:0003700 ... A0A5G2QTN4 40267997
    931978 8zha:A (1.95) BS01 A1L1W N/A GO:0003676 ... P12497 38942126
    931979 8zhb:LD (2.6) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    931980 8zhb:LD (2.6) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    931981 8zhb:LE (2.6) BS01 rna N/A GO:0000027 ... P14126 N/A
    931982 8zhb:LF (2.6) BS01 rna N/A GO:0002181 ... P10664 N/A
    931983 8zhb:LF (2.6) BS02 rna N/A GO:0002181 ... P10664 N/A
    931984 8zhb:LG (2.6) BS01 rna N/A GO:0000027 ... P26321 N/A
    931985 8zhb:LG (2.6) BS02 rna N/A GO:0000027 ... P26321 N/A
    931986 8zhb:LH (2.6) BS01 rna N/A GO:0000027 ... P05739 N/A
    931987 8zhb:LI (2.6) BS01 rna N/A GO:0000463 ... P05737 N/A
    931988 8zhb:LI (2.6) BS02 rna N/A GO:0000463 ... P05737 N/A
    931989 8zhb:LJ (2.6) BS01 rna N/A GO:0000470 ... P17076 N/A
    931990 8zhb:LJ (2.6) BS02 rna N/A GO:0000470 ... P17076 N/A
    931991 8zhb:LK (2.6) BS01 rna N/A GO:0002181 ... P05738 N/A
    931992 8zhb:LL (2.6) BS01 rna N/A GO:0000027 ... P41805 N/A
    931993 8zhb:LL (2.6) BS02 rna N/A GO:0000027 ... P41805 N/A
    931994 8zhb:LL (2.6) BS03 rna N/A GO:0000027 ... P41805 N/A
    931995 8zhb:LM (2.6) BS01 rna N/A GO:0000027 ... Q3E757 N/A
    931996 8zhb:LM (2.6) BS02 rna N/A GO:0000027 ... Q3E757 N/A
    931997 8zhb:LN (2.6) BS01 rna N/A GO:0002181 ... Q12690 N/A
    931998 8zhb:LN (2.6) BS02 rna N/A GO:0002181 ... Q12690 N/A
    931999 8zhb:LO (2.6) BS01 rna N/A GO:0000027 ... P36105 N/A
    932000 8zhb:LP (2.6) BS01 rna N/A GO:0000470 ... P05748 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).