SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    933001 8zmq:M (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933002 8zmq:N (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933003 8zmq:O (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933004 8zmq:P (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933005 8zmq:Q (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933006 8zmq:R (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933007 8zmq:S (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933008 8zmq:T (2.2) BS01 A1L12 N/A N/A O60885 39602227
    933009 8zmr:A (3.5) BS01 A1LWL N/A GO:0005277 ... P0AEX9
    Q16572
    38862671
    933010 8zmt:C (2.52) BS01 A1D6P N/A GO:0005739 ... P00163 39601138
    933011 8zmt:C (2.52) BS02 HEM N/A GO:0005739 ... P00163 39601138
    933012 8zmt:C (2.52) BS03 HEM N/A GO:0005739 ... P00163 39601138
    933013 8zmt:D (2.52) BS01 HEM N/A GO:0009055 ... P07143 39601138
    933014 8zmt:E (2.52) BS01 FES N/A GO:0008121 ... P08067 39601138
    933015 8zmt:N (2.52) BS01 A1D6P N/A GO:0005739 ... P00163 39601138
    933016 8zmt:N (2.52) BS02 UQ6 N/A GO:0005739 ... P00163 39601138
    933017 8zmt:N (2.52) BS03 HEM N/A GO:0005739 ... P00163 39601138
    933018 8zmt:N (2.52) BS04 CN5 N/A GO:0005739 ... P00163 39601138
    933019 8zmt:N (2.52) BS05 HEM N/A GO:0005739 ... P00163 39601138
    933020 8zmt:O (2.52) BS01 HEM N/A GO:0009055 ... P07143 39601138
    933021 8zmt:P (2.52) BS01 FES N/A GO:0008121 ... P08067 39601138
    933022 8zmv:B (1.45) BS01 peptide N/A N/A N/A N/A
    933023 8zmv:B (1.45) BS02 peptide N/A N/A N/A N/A
    933024 8zmx:A (2.46) BS01 NAP N/A GO:0000166 ... A0A1Y3PXT7 N/A
    933025 8zmx:B (2.46) BS01 NAP N/A GO:0000166 ... A0A1Y3PXT7 N/A
    933026 8zmx:C (2.46) BS01 NAP N/A GO:0000166 ... A0A1Y3PXT7 N/A
    933027 8zmy:A (2.9) BS01 1KI N/A N/A P37840 39172784
    933028 8zmy:A (2.9) BS02 1KI N/A N/A P37840 39172784
    933029 8zmy:B (2.9) BS01 1KI N/A N/A P37840 39172784
    933030 8zmy:B (2.9) BS02 1KI N/A N/A P37840 39172784
    933031 8zmy:B (2.9) BS03 1KI N/A N/A P37840 39172784
    933032 8zmy:B (2.9) BS04 1KI N/A N/A P37840 39172784
    933033 8zmy:C (2.9) BS01 1KI N/A N/A P37840 39172784
    933034 8zmy:C (2.9) BS02 1KI N/A N/A P37840 39172784
    933035 8zmy:C (2.9) BS03 1KI N/A N/A P37840 39172784
    933036 8zmy:C (2.9) BS04 1KI N/A N/A P37840 39172784
    933037 8zmy:D (2.9) BS01 1KI N/A N/A P37840 39172784
    933038 8zmy:E (2.9) BS01 1KI N/A N/A P37840 39172784
    933039 8zmy:E (2.9) BS02 1KI N/A N/A P37840 39172784
    933040 8zmy:E (2.9) BS03 1KI N/A N/A P37840 39172784
    933041 8zmy:F (2.9) BS01 1KI N/A N/A P37840 39172784
    933042 8zmy:F (2.9) BS02 1KI N/A N/A P37840 39172784
    933043 8zmy:F (2.9) BS03 1KI N/A N/A P37840 39172784
    933044 8zmy:F (2.9) BS04 1KI N/A N/A P37840 39172784
    933045 8zmy:G (2.9) BS01 1KI N/A N/A P37840 39172784
    933046 8zmy:G (2.9) BS02 1KI N/A N/A P37840 39172784
    933047 8zmy:G (2.9) BS03 1KI N/A N/A P37840 39172784
    933048 8zmy:H (2.9) BS01 1KI N/A N/A P37840 39172784
    933049 8zmy:H (2.9) BS02 1KI N/A N/A P37840 39172784
    933050 8zmy:H (2.9) BS03 1KI N/A N/A P37840 39172784
    933051 8zmy:H (2.9) BS04 1KI N/A N/A P37840 39172784
    933052 8zmy:H (2.9) BS05 1KI N/A N/A P37840 39172784
    933053 8zmy:I (2.9) BS01 1KI N/A N/A P37840 39172784
    933054 8zmy:J (2.9) BS01 1KI N/A N/A P37840 39172784
    933055 8zmy:J (2.9) BS02 1KI N/A N/A P37840 39172784
    933056 8zmy:J (2.9) BS03 1KI N/A N/A P37840 39172784
    933057 8zmy:K (2.9) BS01 1KI N/A N/A P37840 39172784
    933058 8zmy:K (2.9) BS02 1KI N/A N/A P37840 39172784
    933059 8zmy:K (2.9) BS03 1KI N/A N/A P37840 39172784
    933060 8zmy:K (2.9) BS04 1KI N/A N/A P37840 39172784
    933061 8zmy:L (2.9) BS01 1KI N/A N/A P37840 39172784
    933062 8zmy:L (2.9) BS02 1KI N/A N/A P37840 39172784
    933063 8zmz:A (2.7) BS01 CA N/A GO:0008218 ... Q5SK82
    Q9U6Y8
    41162396
    933064 8zn0:A (1.8) BS01 SAM N/A GO:0008168 ... N/A 39612339
    933065 8zn0:A (1.8) BS02 A1D8J N/A GO:0008168 ... N/A 39612339
    933066 8zn0:B (1.8) BS01 SAM N/A GO:0008168 ... N/A 39612339
    933067 8zn0:B (1.8) BS02 A1D8J N/A GO:0008168 ... N/A 39612339
    933068 8zn1:A (3.0) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933069 8zn1:B (3.0) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933070 8zn1:C (3.0) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933071 8zn1:D (3.0) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933072 8zn2:A (2.651) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933073 8zn2:B (2.651) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933074 8zn2:C (2.651) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933075 8zn2:D (2.651) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933076 8zn2:E (2.651) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933077 8zn2:F (2.651) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933078 8zn3:A (2.41) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933079 8zn3:B (2.41) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933080 8zn3:C (2.41) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933081 8zn3:D (2.41) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933082 8zn3:E (2.41) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933083 8zn3:F (2.41) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    933084 8zn4:A (2.3) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933085 8zn4:B (2.3) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933086 8zn4:C (2.3) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933087 8zn4:D (2.3) BS01 NAD 1.2.1.- GO:0006006 ... N/A N/A
    933088 8zn5:A (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933089 8zn5:A (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933090 8zn5:A (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933091 8zn5:A (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933092 8zn5:A (3.1) BS05 MG N/A GO:0000287 ... N/A N/A
    933093 8zn5:B (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933094 8zn5:B (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933095 8zn5:B (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933096 8zn5:B (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933097 8zn5:C (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933098 8zn5:C (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933099 8zn5:C (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933100 8zn5:C (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933101 8zn5:D (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933102 8zn5:D (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933103 8zn5:D (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933104 8zn5:D (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933105 8zn5:E (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933106 8zn5:E (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933107 8zn5:E (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933108 8zn5:E (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933109 8zn5:E (3.1) BS05 MG N/A GO:0000287 ... N/A N/A
    933110 8zn5:F (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933111 8zn5:F (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933112 8zn5:F (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933113 8zn5:F (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933114 8zn5:G (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933115 8zn5:G (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933116 8zn5:G (3.1) BS03 MG N/A GO:0000287 ... N/A N/A
    933117 8zn5:G (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933118 8zn5:G (3.1) BS05 ADP N/A GO:0000287 ... N/A N/A
    933119 8zn5:H (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933120 8zn5:H (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933121 8zn5:H (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933122 8zn5:H (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933123 8zn5:H (3.1) BS05 MG N/A GO:0000287 ... N/A N/A
    933124 8zn5:H (3.1) BS06 MG N/A GO:0000287 ... N/A N/A
    933125 8zn5:I (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933126 8zn5:I (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933127 8zn5:I (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933128 8zn5:I (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933129 8zn5:J (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933130 8zn5:J (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933131 8zn5:J (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933132 8zn5:J (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933133 8zn5:K (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933134 8zn5:K (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933135 8zn5:K (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933136 8zn5:K (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933137 8zn5:L (3.1) BS01 ADP N/A GO:0000287 ... N/A N/A
    933138 8zn5:L (3.1) BS02 ADP N/A GO:0000287 ... N/A N/A
    933139 8zn5:L (3.1) BS03 ADP N/A GO:0000287 ... N/A N/A
    933140 8zn5:L (3.1) BS04 ADP N/A GO:0000287 ... N/A N/A
    933141 8zn6:A (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933142 8zn6:A (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933143 8zn6:A (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933144 8zn6:A (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933145 8zn6:A (2.94) BS05 MG N/A GO:0000287 ... N/A N/A
    933146 8zn6:B (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933147 8zn6:B (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933148 8zn6:B (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933149 8zn6:B (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933150 8zn6:C (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933151 8zn6:C (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933152 8zn6:C (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933153 8zn6:C (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933154 8zn6:D (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933155 8zn6:D (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933156 8zn6:D (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933157 8zn6:D (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933158 8zn6:E (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933159 8zn6:E (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933160 8zn6:E (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933161 8zn6:E (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933162 8zn6:F (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933163 8zn6:F (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933164 8zn6:F (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933165 8zn6:F (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933166 8zn6:G (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933167 8zn6:G (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933168 8zn6:G (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933169 8zn6:G (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933170 8zn6:H (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933171 8zn6:H (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933172 8zn6:H (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933173 8zn6:H (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933174 8zn6:H (2.94) BS05 MG N/A GO:0000287 ... N/A N/A
    933175 8zn6:I (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933176 8zn6:I (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933177 8zn6:I (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933178 8zn6:I (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933179 8zn6:I (2.94) BS05 MG N/A GO:0000287 ... N/A N/A
    933180 8zn6:J (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933181 8zn6:J (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933182 8zn6:J (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933183 8zn6:J (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933184 8zn6:K (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933185 8zn6:K (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933186 8zn6:K (2.94) BS03 MG N/A GO:0000287 ... N/A N/A
    933187 8zn6:K (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933188 8zn6:K (2.94) BS05 ANP N/A GO:0000287 ... N/A N/A
    933189 8zn6:L (2.94) BS01 ANP N/A GO:0000287 ... N/A N/A
    933190 8zn6:L (2.94) BS02 ANP N/A GO:0000287 ... N/A N/A
    933191 8zn6:L (2.94) BS03 ANP N/A GO:0000287 ... N/A N/A
    933192 8zn6:L (2.94) BS04 ANP N/A GO:0000287 ... N/A N/A
    933193 8zn7:A (2.54) BS01 ANP N/A GO:0000287 ... N/A N/A
    933194 8zn7:A (2.54) BS02 ANP N/A GO:0000287 ... N/A N/A
    933195 8zn7:A (2.54) BS03 ANP N/A GO:0000287 ... N/A N/A
    933196 8zn7:A (2.54) BS04 ANP N/A GO:0000287 ... N/A N/A
    933197 8zn7:B (2.54) BS01 ANP N/A GO:0000287 ... N/A N/A
    933198 8zn7:B (2.54) BS02 ANP N/A GO:0000287 ... N/A N/A
    933199 8zn7:B (2.54) BS03 ANP N/A GO:0000287 ... N/A N/A
    933200 8zn7:B (2.54) BS04 ANP N/A GO:0000287 ... N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).