SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    933401 9f1b:Av (3.01) BS01 rna N/A GO:0003735 ... G1TG89 39169182
    933402 9f1b:Aw (3.01) BS01 rna N/A GO:0003735 ... G1SZ47 39169182
    933403 9f1b:Ax (3.01) BS01 rna N/A GO:0003735 ... G1T3D8 39169182
    933404 9f1b:Ay (3.01) BS01 rna N/A GO:0003735 ... G1TDB3 39169182
    933405 9f1b:Ay (3.01) BS02 rna N/A GO:0003735 ... G1TDB3 39169182
    933406 9f1b:B (3.01) BS01 rna N/A GO:0000027 ... G1SZF4 39169182
    933407 9f1b:B (3.01) BS02 rna N/A GO:0000027 ... G1SZF4 39169182
    933408 9f1b:B (3.01) BS03 GTP N/A GO:0000027 ... G1SZF4 39169182
    933409 9f1b:BA (3.01) BS01 rna N/A GO:0002181 ... G1TT27 39169182
    933410 9f1b:BA (3.01) BS02 rna N/A GO:0002181 ... G1TT27 39169182
    933411 9f1b:BB (3.01) BS01 rna N/A GO:0003723 ... G1TL06 39169182
    933412 9f1b:BC (3.01) BS01 rna N/A GO:0003735 ... G1SVW5 39169182
    933413 9f1b:BC (3.01) BS02 rna N/A GO:0003735 ... G1SVW5 39169182
    933414 9f1b:BE (3.01) BS01 rna N/A GO:0000027 ... G1SKF7 39169182
    933415 9f1b:BF (3.01) BS01 rna N/A GO:0000463 ... G1TUB1 39169182
    933416 9f1b:BF (3.01) BS02 rna N/A GO:0000463 ... G1TUB1 39169182
    933417 9f1b:BG (3.01) BS01 rna N/A GO:0003723 ... N/A 39169182
    933418 9f1b:BG (3.01) BS02 rna N/A GO:0003723 ... N/A 39169182
    933419 9f1b:BH (3.01) BS01 rna N/A GO:0002181 ... G1SWI6 39169182
    933420 9f1b:BI (3.01) BS01 rna N/A GO:0003735 ... B7NZQ2 39169182
    933421 9f1b:BI (3.01) BS02 rna N/A GO:0003735 ... B7NZQ2 39169182
    933422 9f1b:BI (3.01) BS03 rna N/A GO:0003735 ... B7NZQ2 39169182
    933423 9f1b:BJ (3.01) BS01 rna N/A GO:0003735 ... G1TUB8 39169182
    933424 9f1b:BJ (3.01) BS02 rna N/A GO:0003735 ... G1TUB8 39169182
    933425 9f1b:BJ (3.01) BS03 rna N/A GO:0003735 ... G1TUB8 39169182
    933426 9f1b:BL (3.01) BS01 rna N/A GO:0003723 ... G1TKB3 39169182
    933427 9f1b:BL (3.01) BS02 rna N/A GO:0003723 ... G1TKB3 39169182
    933428 9f1b:BM (3.01) BS01 rna N/A GO:0003723 ... G1SZ12 39169182
    933429 9f1b:BN (3.01) BS01 rna N/A GO:0002181 ... G1T0C1 39169182
    933430 9f1b:BN (3.01) BS02 rna N/A GO:0002181 ... G1T0C1 39169182
    933431 9f1b:BO (3.01) BS01 rna N/A GO:0003729 ... G1TVS8 39169182
    933432 9f1b:BP (3.01) BS01 rna N/A GO:0002181 ... G1SCJ6 39169182
    933433 9f1b:BP (3.01) BS02 rna N/A GO:0002181 ... G1SCJ6 39169182
    933434 9f1b:BQ (3.01) BS01 rna N/A GO:0003735 ... N/A 39169182
    933435 9f1b:BR (3.01) BS01 rna N/A GO:0003723 ... G1TJR3 39169182
    933436 9f1b:BR (3.01) BS02 rna N/A GO:0003723 ... G1TJR3 39169182
    933437 9f1b:BS (3.01) BS01 rna N/A GO:0003735 ... G1TTY7 39169182
    933438 9f1b:BS (3.01) BS02 rna N/A GO:0003735 ... G1TTY7 39169182
    933439 9f1b:BT (3.01) BS01 rna N/A GO:0003735 ... G1SHQ2 39169182
    933440 9f1b:BT (3.01) BS02 rna N/A GO:0003735 ... G1SHQ2 39169182
    933441 9f1b:BU (3.01) BS01 rna N/A GO:0002181 ... G1TSG1 39169182
    933442 9f1b:BV (3.01) BS01 rna N/A GO:0003735 ... G1T6D1 39169182
    933443 9f1b:BW (3.01) BS01 rna N/A GO:0000027 ... G1SE28 39169182
    933444 9f1b:BW (3.01) BS02 rna N/A GO:0000027 ... G1SE28 39169182
    933445 9f1b:BX (3.01) BS01 rna N/A GO:0003735 ... G1SE76 39169182
    933446 9f1b:BX (3.01) BS02 rna N/A GO:0003735 ... G1SE76 39169182
    933447 9f1b:BY (3.01) BS01 rna N/A GO:0003723 ... G1SQH0 39169182
    933448 9f1b:BY (3.01) BS02 rna N/A GO:0003723 ... G1SQH0 39169182
    933449 9f1b:BZ (3.01) BS01 rna N/A GO:0003735 ... G1TXF6 39169182
    933450 9f1b:Ba (3.01) BS01 rna N/A GO:0003735 ... G1SNY0 39169182
    933451 9f1b:Bb (3.01) BS01 rna N/A GO:0002181 ... G1SGR6 39169182
    933452 9f1b:Bc (3.01) BS01 rna N/A GO:0002181 ... G1TDL2 39169182
    933453 9f1b:Bc (3.01) BS02 rna N/A GO:0002181 ... G1TDL2 39169182
    933454 9f1b:Bd (3.01) BS01 rna N/A GO:0002181 ... G1SHG0 39169182
    933455 9f1b:Be (3.01) BS01 rna N/A GO:0003735 ... G1U6S0 39169182
    933456 9f1b:Bf (3.01) BS01 rna N/A GO:0000049 ... G1SF08 39169182
    933457 9f1b:Bg (3.01) BS01 rna N/A GO:0003735 ... G1TXG5 39169182
    933458 9f1b:Bg (3.01) BS02 ZN N/A GO:0003735 ... G1TXG5 39169182
    933459 9f1b:Bh (3.01) BS01 rna N/A GO:0000463 ... G1SIT5 39169182
    933460 9f1b:Bh (3.01) BS02 rna N/A GO:0000463 ... G1SIT5 39169182
    933461 9f1b:Bi (3.01) BS01 rna N/A GO:0003735 ... G1TTQ5 39169182
    933462 9f1b:Bj (3.01) BS01 rna N/A GO:0003723 ... U3KPD5 39169182
    933463 9f1b:Bj (3.01) BS02 rna N/A GO:0003723 ... U3KPD5 39169182
    933464 9f1b:Bj (3.01) BS03 ZN N/A GO:0003723 ... U3KPD5 39169182
    933465 9f1b:Bk (3.01) BS01 rna N/A GO:0003735 ... G1U001 39169182
    933466 9f1b:Bl (3.01) BS01 rna N/A GO:0003735 ... G1TTN1 39169182
    933467 9f1b:Bl (3.01) BS02 rna N/A GO:0003735 ... G1TTN1 39169182
    933468 9f1b:Bl (3.01) BS03 peptide N/A GO:0003735 ... G1TTN1 39169182
    933469 9f1b:Bm (3.01) BS01 rna N/A GO:0003735 ... P0DXC2 39169182
    933470 9f1b:Bm (3.01) BS02 ZN N/A GO:0003735 ... P0DXC2 39169182
    933471 9f1b:Bo (3.01) BS01 rna N/A GO:0003735 ... A0AAA9WX15 39169182
    933472 9f1b:Bo (3.01) BS02 ZN N/A GO:0003735 ... A0AAA9WX15 39169182
    933473 9f1b:Bp (3.01) BS01 rna N/A GO:0003735 ... G1SY53 39169182
    933474 9f1b:Bp (3.01) BS02 ZN N/A GO:0003735 ... G1SY53 39169182
    933475 9f1b:Br (3.01) BS01 rna N/A GO:0003735 ... G1U7L1 39169182
    933476 9f1b:Bs (3.01) BS01 rna N/A GO:0000027 ... G1SPK4 39169182
    933477 9f1b:Bt (3.01) BS01 rna N/A GO:0003723 ... G1SMR7 39169182
    933478 9f1b:Cu (3.01) BS01 rna N/A N/A P20290 39169182
    933479 9f1b:DB (3.01) BS01 rna N/A GO:0001525 ... Q9BXJ9 39169182
    933480 9f1b:DB (3.01) BS02 IHP N/A GO:0001525 ... Q9BXJ9 39169182
    933481 9f1c:AA (3.78) BS01 rna N/A GO:0003735 ... G1TZ76 39169182
    933482 9f1c:AB (3.78) BS01 rna N/A GO:0000028 ... G1TIB4 39169182
    933483 9f1c:AC (3.78) BS01 rna N/A GO:0003735 ... G1SK22 39169182
    933484 9f1c:AC (3.78) BS02 ZN N/A GO:0003735 ... G1SK22 39169182
    933485 9f1c:AD (3.78) BS01 rna N/A GO:0003735 ... G1T8A2 39169182
    933486 9f1c:AE (3.78) BS01 rna N/A GO:0003735 ... N/A 39169182
    933487 9f1c:AE (3.78) BS02 ZN N/A GO:0003735 ... N/A 39169182
    933488 9f1c:AF (3.78) BS01 rna N/A GO:0001891 ... G1SJB4 39169182
    933489 9f1c:AG (3.78) BS01 rna N/A GO:0002181 ... G1U7M4 39169182
    933490 9f1c:AG (3.78) BS02 ZN N/A GO:0002181 ... G1U7M4 39169182
    933491 9f1c:AZ (3.78) BS01 rna N/A GO:0000028 ... G1TLT8 39169182
    933492 9f1c:Aa (3.78) BS01 rna N/A GO:0003735 ... G1SS70 39169182
    933493 9f1c:Ab (3.78) BS01 rna N/A GO:0003723 ... N/A 39169182
    933494 9f1c:Ac (3.78) BS01 rna N/A GO:0003677 ... G1TNM3 39169182
    933495 9f1c:Ad (3.78) BS01 rna N/A GO:0003723 ... G1TK17 39169182
    933496 9f1c:Ae (3.78) BS01 rna N/A GO:0003723 ... G1TFM5 39169182
    933497 9f1c:Af (3.78) BS01 rna N/A GO:0003735 ... G1TM55 39169182
    933498 9f1c:Ag (3.78) BS01 rna N/A GO:0003735 ... G1SVB0 39169182
    933499 9f1c:Ah (3.78) BS01 rna N/A GO:0003735 ... G1TJW1 39169182
    933500 9f1c:Ah (3.78) BS02 rna N/A GO:0003735 ... G1TJW1 39169182
    933501 9f1c:Ai (3.78) BS01 rna N/A GO:0003723 ... B7NZS8 39169182
    933502 9f1c:Aj (3.78) BS01 rna N/A GO:0003723 ... G1TPV3 39169182
    933503 9f1c:Ak (3.78) BS01 rna N/A GO:0003735 ... G1TRM4 39169182
    933504 9f1c:Al (3.78) BS01 rna N/A GO:0003735 ... G1SFR8 39169182
    933505 9f1c:Am (3.78) BS01 rna N/A GO:0003735 ... G1SP51 39169182
    933506 9f1c:Am (3.78) BS02 rna N/A GO:0003735 ... G1SP51 39169182
    933507 9f1c:An (3.78) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 39169182
    933508 9f1c:Ao (3.78) BS01 rna N/A GO:0000028 ... G1U0Q2 39169182
    933509 9f1c:Ao (3.78) BS02 rna N/A GO:0000028 ... G1U0Q2 39169182
    933510 9f1c:Ap (3.78) BS01 rna N/A GO:0000462 ... G1SGX4 39169182
    933511 9f1c:Aq (3.78) BS01 rna N/A GO:0003735 ... G1TU13 39169182
    933512 9f1c:Ar (3.78) BS01 rna N/A GO:0003676 ... G1TPG3 39169182
    933513 9f1c:As (3.78) BS01 rna N/A GO:0000028 ... G1TN62 39169182
    933514 9f1c:At (3.78) BS01 rna N/A GO:0003723 ... G1SIZ2 39169182
    933515 9f1c:Av (3.78) BS01 rna N/A GO:0003735 ... G1TG89 39169182
    933516 9f1c:Aw (3.78) BS01 rna N/A GO:0003735 ... G1SZ47 39169182
    933517 9f1c:Ax (3.78) BS01 rna N/A GO:0003735 ... G1T3D8 39169182
    933518 9f1c:Ay (3.78) BS01 rna N/A GO:0003735 ... G1TDB3 39169182
    933519 9f1c:Ay (3.78) BS02 rna N/A GO:0003735 ... G1TDB3 39169182
    933520 9f1c:B (3.78) BS01 rna N/A GO:0000027 ... G1SZF4 39169182
    933521 9f1c:B (3.78) BS02 rna N/A GO:0000027 ... G1SZF4 39169182
    933522 9f1c:B (3.78) BS03 GTP N/A GO:0000027 ... G1SZF4 39169182
    933523 9f1c:BA (3.78) BS01 rna N/A GO:0002181 ... G1TT27 39169182
    933524 9f1c:BA (3.78) BS02 rna N/A GO:0002181 ... G1TT27 39169182
    933525 9f1c:BB (3.78) BS01 rna N/A GO:0003723 ... G1TL06 39169182
    933526 9f1c:BC (3.78) BS01 rna N/A GO:0003735 ... G1SVW5 39169182
    933527 9f1c:BC (3.78) BS02 rna N/A GO:0003735 ... G1SVW5 39169182
    933528 9f1c:BE (3.78) BS01 rna N/A GO:0000027 ... G1SKF7 39169182
    933529 9f1c:BF (3.78) BS01 rna N/A GO:0000463 ... G1TUB1 39169182
    933530 9f1c:BF (3.78) BS02 rna N/A GO:0000463 ... G1TUB1 39169182
    933531 9f1c:BG (3.78) BS01 rna N/A GO:0003723 ... N/A 39169182
    933532 9f1c:BG (3.78) BS02 rna N/A GO:0003723 ... N/A 39169182
    933533 9f1c:BH (3.78) BS01 rna N/A GO:0002181 ... G1SWI6 39169182
    933534 9f1c:BI (3.78) BS01 rna N/A GO:0003735 ... B7NZQ2 39169182
    933535 9f1c:BI (3.78) BS02 rna N/A GO:0003735 ... B7NZQ2 39169182
    933536 9f1c:BI (3.78) BS03 rna N/A GO:0003735 ... B7NZQ2 39169182
    933537 9f1c:BJ (3.78) BS01 rna N/A GO:0003735 ... G1TUB8 39169182
    933538 9f1c:BJ (3.78) BS02 rna N/A GO:0003735 ... G1TUB8 39169182
    933539 9f1c:BJ (3.78) BS03 rna N/A GO:0003735 ... G1TUB8 39169182
    933540 9f1c:BK (3.78) BS01 rna N/A N/A N/A 39169182
    933541 9f1c:BK (3.78) BS02 rna N/A N/A N/A 39169182
    933542 9f1c:BL (3.78) BS01 rna N/A GO:0003723 ... G1TKB3 39169182
    933543 9f1c:BL (3.78) BS02 rna N/A GO:0003723 ... G1TKB3 39169182
    933544 9f1c:BM (3.78) BS01 rna N/A GO:0003723 ... G1SZ12 39169182
    933545 9f1c:BN (3.78) BS01 rna N/A GO:0002181 ... G1T0C1 39169182
    933546 9f1c:BN (3.78) BS02 rna N/A GO:0002181 ... G1T0C1 39169182
    933547 9f1c:BO (3.78) BS01 rna N/A GO:0003729 ... G1TVS8 39169182
    933548 9f1c:BP (3.78) BS01 rna N/A GO:0002181 ... G1SCJ6 39169182
    933549 9f1c:BP (3.78) BS02 rna N/A GO:0002181 ... G1SCJ6 39169182
    933550 9f1c:BQ (3.78) BS01 rna N/A GO:0003735 ... N/A 39169182
    933551 9f1c:BR (3.78) BS01 rna N/A GO:0003723 ... G1TJR3 39169182
    933552 9f1c:BR (3.78) BS02 rna N/A GO:0003723 ... G1TJR3 39169182
    933553 9f1c:BS (3.78) BS01 rna N/A GO:0003735 ... G1TTY7 39169182
    933554 9f1c:BS (3.78) BS02 rna N/A GO:0003735 ... G1TTY7 39169182
    933555 9f1c:BT (3.78) BS01 rna N/A GO:0003735 ... G1SHQ2 39169182
    933556 9f1c:BT (3.78) BS02 rna N/A GO:0003735 ... G1SHQ2 39169182
    933557 9f1c:BU (3.78) BS01 rna N/A GO:0002181 ... G1TSG1 39169182
    933558 9f1c:BV (3.78) BS01 rna N/A GO:0003735 ... G1T6D1 39169182
    933559 9f1c:BW (3.78) BS01 rna N/A GO:0000027 ... G1SE28 39169182
    933560 9f1c:BW (3.78) BS02 rna N/A GO:0000027 ... G1SE28 39169182
    933561 9f1c:BX (3.78) BS01 rna N/A GO:0003735 ... G1SE76 39169182
    933562 9f1c:BX (3.78) BS02 rna N/A GO:0003735 ... G1SE76 39169182
    933563 9f1c:BY (3.78) BS01 rna N/A GO:0003723 ... G1SQH0 39169182
    933564 9f1c:BY (3.78) BS02 rna N/A GO:0003723 ... G1SQH0 39169182
    933565 9f1c:BZ (3.78) BS01 rna N/A GO:0003735 ... G1TXF6 39169182
    933566 9f1c:Ba (3.78) BS01 rna N/A GO:0003735 ... G1SNY0 39169182
    933567 9f1c:Bb (3.78) BS01 rna N/A GO:0002181 ... G1SGR6 39169182
    933568 9f1c:Bc (3.78) BS01 rna N/A GO:0002181 ... G1TDL2 39169182
    933569 9f1c:Bd (3.78) BS01 rna N/A GO:0002181 ... G1SHG0 39169182
    933570 9f1c:Be (3.78) BS01 rna N/A GO:0003735 ... A0AAA9WVN6 39169182
    933571 9f1c:Bf (3.78) BS01 rna N/A GO:0000049 ... G1SF08 39169182
    933572 9f1c:Bg (3.78) BS01 rna N/A GO:0003735 ... G1TXG5 39169182
    933573 9f1c:Bg (3.78) BS02 ZN N/A GO:0003735 ... G1TXG5 39169182
    933574 9f1c:Bh (3.78) BS01 rna N/A GO:0000463 ... G1SIT5 39169182
    933575 9f1c:Bh (3.78) BS02 rna N/A GO:0000463 ... G1SIT5 39169182
    933576 9f1c:Bi (3.78) BS01 rna N/A GO:0003735 ... G1TTQ5 39169182
    933577 9f1c:Bj (3.78) BS01 rna N/A GO:0003723 ... U3KPD5 39169182
    933578 9f1c:Bj (3.78) BS02 rna N/A GO:0003723 ... U3KPD5 39169182
    933579 9f1c:Bj (3.78) BS03 ZN N/A GO:0003723 ... U3KPD5 39169182
    933580 9f1c:Bk (3.78) BS01 rna N/A GO:0003735 ... G1U001 39169182
    933581 9f1c:Bl (3.78) BS01 rna N/A GO:0003735 ... G1TTN1 39169182
    933582 9f1c:Bl (3.78) BS02 rna N/A GO:0003735 ... G1TTN1 39169182
    933583 9f1c:Bm (3.78) BS01 rna N/A GO:0003735 ... P0DXC2 39169182
    933584 9f1c:Bm (3.78) BS02 ZN N/A GO:0003735 ... P0DXC2 39169182
    933585 9f1c:Bo (3.78) BS01 rna N/A GO:0003735 ... A0AAA9WX15 39169182
    933586 9f1c:Bo (3.78) BS02 ZN N/A GO:0003735 ... A0AAA9WX15 39169182
    933587 9f1c:Bp (3.78) BS01 rna N/A GO:0003735 ... G1SY53 39169182
    933588 9f1c:Bp (3.78) BS02 ZN N/A GO:0003735 ... G1SY53 39169182
    933589 9f1c:Br (3.78) BS01 rna N/A GO:0003735 ... G1U7L1 39169182
    933590 9f1c:Bs (3.78) BS01 rna N/A GO:0000027 ... G1SPK4 39169182
    933591 9f1c:Bt (3.78) BS01 rna N/A GO:0003723 ... G1SMR7 39169182
    933592 9f1c:Cu (3.78) BS01 rna N/A N/A P20290 39169182
    933593 9f1c:DB (3.78) BS01 rna N/A GO:0001525 ... Q9BXJ9 39169182
    933594 9f1c:DB (3.78) BS02 IHP N/A GO:0001525 ... Q9BXJ9 39169182
    933595 9f1d:AA (3.26) BS01 rna N/A GO:0003735 ... G1TZ76 39169182
    933596 9f1d:AB (3.26) BS01 rna N/A GO:0000028 ... G1TIB4 39169182
    933597 9f1d:AC (3.26) BS01 rna N/A GO:0003735 ... G1SK22 39169182
    933598 9f1d:AC (3.26) BS02 ZN N/A GO:0003735 ... G1SK22 39169182
    933599 9f1d:AD (3.26) BS01 rna N/A GO:0003735 ... G1T8A2 39169182
    933600 9f1d:AE (3.26) BS01 rna N/A GO:0003735 ... N/A 39169182

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).