SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    933601 9f1d:AE (3.26) BS02 ZN N/A GO:0003735 ... N/A 39169182
    933602 9f1d:AF (3.26) BS01 rna N/A GO:0001891 ... G1SJB4 39169182
    933603 9f1d:AG (3.26) BS01 rna N/A GO:0002181 ... G1U7M4 39169182
    933604 9f1d:AG (3.26) BS02 ZN N/A GO:0002181 ... G1U7M4 39169182
    933605 9f1d:AZ (3.26) BS01 rna N/A GO:0000028 ... G1TLT8 39169182
    933606 9f1d:Aa (3.26) BS01 rna N/A GO:0003735 ... G1SS70 39169182
    933607 9f1d:Ab (3.26) BS01 rna N/A GO:0003723 ... N/A 39169182
    933608 9f1d:Ac (3.26) BS01 rna N/A GO:0003677 ... G1TNM3 39169182
    933609 9f1d:Ad (3.26) BS01 rna N/A GO:0003723 ... G1TK17 39169182
    933610 9f1d:Ae (3.26) BS01 rna N/A GO:0003723 ... G1TFM5 39169182
    933611 9f1d:Af (3.26) BS01 rna N/A GO:0003735 ... G1TM55 39169182
    933612 9f1d:Ag (3.26) BS01 rna N/A GO:0003735 ... G1SVB0 39169182
    933613 9f1d:Ah (3.26) BS01 rna N/A GO:0003735 ... G1TJW1 39169182
    933614 9f1d:Ah (3.26) BS02 rna N/A GO:0003735 ... G1TJW1 39169182
    933615 9f1d:Ai (3.26) BS01 rna N/A GO:0003723 ... B7NZS8 39169182
    933616 9f1d:Aj (3.26) BS01 rna N/A GO:0003723 ... G1TPV3 39169182
    933617 9f1d:Ak (3.26) BS01 rna N/A GO:0003735 ... G1TRM4 39169182
    933618 9f1d:Al (3.26) BS01 rna N/A GO:0003735 ... G1SFR8 39169182
    933619 9f1d:Am (3.26) BS01 rna N/A GO:0003735 ... G1SP51 39169182
    933620 9f1d:Am (3.26) BS02 rna N/A GO:0003735 ... G1SP51 39169182
    933621 9f1d:An (3.26) BS01 rna N/A GO:0003735 ... A0AAA9WYR1 39169182
    933622 9f1d:Ao (3.26) BS01 rna N/A GO:0000028 ... G1U0Q2 39169182
    933623 9f1d:Ao (3.26) BS02 rna N/A GO:0000028 ... G1U0Q2 39169182
    933624 9f1d:Ap (3.26) BS01 rna N/A GO:0000462 ... G1SGX4 39169182
    933625 9f1d:Aq (3.26) BS01 rna N/A GO:0003735 ... G1TU13 39169182
    933626 9f1d:Ar (3.26) BS01 rna N/A GO:0003676 ... G1TPG3 39169182
    933627 9f1d:As (3.26) BS01 rna N/A GO:0000028 ... G1TN62 39169182
    933628 9f1d:At (3.26) BS01 rna N/A GO:0003723 ... G1SIZ2 39169182
    933629 9f1d:Av (3.26) BS01 rna N/A GO:0003735 ... G1TG89 39169182
    933630 9f1d:Aw (3.26) BS01 rna N/A GO:0003735 ... G1SZ47 39169182
    933631 9f1d:Ax (3.26) BS01 rna N/A GO:0003735 ... G1T3D8 39169182
    933632 9f1d:Ay (3.26) BS01 rna N/A GO:0003735 ... G1TDB3 39169182
    933633 9f1d:Ay (3.26) BS02 rna N/A GO:0003735 ... G1TDB3 39169182
    933634 9f1d:B (3.26) BS01 rna N/A GO:0000027 ... G1SZF4 39169182
    933635 9f1d:B (3.26) BS02 rna N/A GO:0000027 ... G1SZF4 39169182
    933636 9f1d:B (3.26) BS03 GTP N/A GO:0000027 ... G1SZF4 39169182
    933637 9f1d:BA (3.26) BS01 rna N/A GO:0002181 ... G1TT27 39169182
    933638 9f1d:BA (3.26) BS02 rna N/A GO:0002181 ... G1TT27 39169182
    933639 9f1d:BB (3.26) BS01 rna N/A GO:0003723 ... G1TL06 39169182
    933640 9f1d:BC (3.26) BS01 rna N/A GO:0003735 ... G1SVW5 39169182
    933641 9f1d:BC (3.26) BS02 rna N/A GO:0003735 ... G1SVW5 39169182
    933642 9f1d:BE (3.26) BS01 rna N/A GO:0000027 ... G1SKF7 39169182
    933643 9f1d:BF (3.26) BS01 rna N/A GO:0000463 ... G1TUB1 39169182
    933644 9f1d:BF (3.26) BS02 rna N/A GO:0000463 ... G1TUB1 39169182
    933645 9f1d:BG (3.26) BS01 rna N/A GO:0003723 ... N/A 39169182
    933646 9f1d:BG (3.26) BS02 rna N/A GO:0003723 ... N/A 39169182
    933647 9f1d:BH (3.26) BS01 rna N/A GO:0002181 ... G1SWI6 39169182
    933648 9f1d:BI (3.26) BS01 rna N/A GO:0003735 ... B7NZQ2 39169182
    933649 9f1d:BI (3.26) BS02 rna N/A GO:0003735 ... B7NZQ2 39169182
    933650 9f1d:BI (3.26) BS03 rna N/A GO:0003735 ... B7NZQ2 39169182
    933651 9f1d:BJ (3.26) BS01 rna N/A GO:0003735 ... G1TUB8 39169182
    933652 9f1d:BJ (3.26) BS02 rna N/A GO:0003735 ... G1TUB8 39169182
    933653 9f1d:BJ (3.26) BS03 rna N/A GO:0003735 ... G1TUB8 39169182
    933654 9f1d:BL (3.26) BS01 rna N/A GO:0003723 ... G1TKB3 39169182
    933655 9f1d:BL (3.26) BS02 rna N/A GO:0003723 ... G1TKB3 39169182
    933656 9f1d:BM (3.26) BS01 rna N/A GO:0003723 ... G1SZ12 39169182
    933657 9f1d:BN (3.26) BS01 rna N/A GO:0002181 ... G1T0C1 39169182
    933658 9f1d:BN (3.26) BS02 rna N/A GO:0002181 ... G1T0C1 39169182
    933659 9f1d:BO (3.26) BS01 rna N/A GO:0003729 ... G1TVS8 39169182
    933660 9f1d:BP (3.26) BS01 rna N/A GO:0002181 ... G1SCJ6 39169182
    933661 9f1d:BP (3.26) BS02 rna N/A GO:0002181 ... G1SCJ6 39169182
    933662 9f1d:BQ (3.26) BS01 rna N/A GO:0003735 ... N/A 39169182
    933663 9f1d:BR (3.26) BS01 rna N/A GO:0003723 ... G1TJR3 39169182
    933664 9f1d:BR (3.26) BS02 rna N/A GO:0003723 ... G1TJR3 39169182
    933665 9f1d:BS (3.26) BS01 rna N/A GO:0003735 ... G1TTY7 39169182
    933666 9f1d:BS (3.26) BS02 rna N/A GO:0003735 ... G1TTY7 39169182
    933667 9f1d:BT (3.26) BS01 rna N/A GO:0003735 ... G1SHQ2 39169182
    933668 9f1d:BT (3.26) BS02 rna N/A GO:0003735 ... G1SHQ2 39169182
    933669 9f1d:BU (3.26) BS01 rna N/A GO:0002181 ... G1TSG1 39169182
    933670 9f1d:BV (3.26) BS01 rna N/A GO:0003735 ... G1T6D1 39169182
    933671 9f1d:BW (3.26) BS01 rna N/A GO:0000027 ... G1SE28 39169182
    933672 9f1d:BW (3.26) BS02 rna N/A GO:0000027 ... G1SE28 39169182
    933673 9f1d:BX (3.26) BS01 rna N/A GO:0003735 ... G1SE76 39169182
    933674 9f1d:BX (3.26) BS02 rna N/A GO:0003735 ... G1SE76 39169182
    933675 9f1d:BY (3.26) BS01 rna N/A GO:0003723 ... G1SQH0 39169182
    933676 9f1d:BY (3.26) BS02 rna N/A GO:0003723 ... G1SQH0 39169182
    933677 9f1d:BZ (3.26) BS01 rna N/A GO:0003735 ... G1TXF6 39169182
    933678 9f1d:Ba (3.26) BS01 rna N/A GO:0003735 ... G1SNY0 39169182
    933679 9f1d:Bb (3.26) BS01 rna N/A GO:0002181 ... G1SGR6 39169182
    933680 9f1d:Bc (3.26) BS01 rna N/A GO:0002181 ... G1TDL2 39169182
    933681 9f1d:Bd (3.26) BS01 rna N/A GO:0002181 ... G1SHG0 39169182
    933682 9f1d:Be (3.26) BS01 rna N/A GO:0003735 ... A0AAA9WVN6 39169182
    933683 9f1d:Bf (3.26) BS01 rna N/A GO:0000049 ... G1SF08 39169182
    933684 9f1d:Bg (3.26) BS01 rna N/A GO:0003735 ... G1TXG5 39169182
    933685 9f1d:Bg (3.26) BS02 ZN N/A GO:0003735 ... G1TXG5 39169182
    933686 9f1d:Bh (3.26) BS01 rna N/A GO:0000463 ... G1SIT5 39169182
    933687 9f1d:Bh (3.26) BS02 rna N/A GO:0000463 ... G1SIT5 39169182
    933688 9f1d:Bi (3.26) BS01 rna N/A GO:0003735 ... G1TTQ5 39169182
    933689 9f1d:Bj (3.26) BS01 rna N/A GO:0003723 ... U3KPD5 39169182
    933690 9f1d:Bj (3.26) BS02 rna N/A GO:0003723 ... U3KPD5 39169182
    933691 9f1d:Bj (3.26) BS03 ZN N/A GO:0003723 ... U3KPD5 39169182
    933692 9f1d:Bk (3.26) BS01 rna N/A GO:0003735 ... G1U001 39169182
    933693 9f1d:Bl (3.26) BS01 rna N/A GO:0003735 ... G1TTN1 39169182
    933694 9f1d:Bl (3.26) BS02 rna N/A GO:0003735 ... G1TTN1 39169182
    933695 9f1d:Bm (3.26) BS01 rna N/A GO:0003735 ... P0DXC2 39169182
    933696 9f1d:Bm (3.26) BS02 ZN N/A GO:0003735 ... P0DXC2 39169182
    933697 9f1d:Bo (3.26) BS01 rna N/A GO:0003735 ... A0AAA9WX15 39169182
    933698 9f1d:Bo (3.26) BS02 ZN N/A GO:0003735 ... A0AAA9WX15 39169182
    933699 9f1d:Bp (3.26) BS01 rna N/A GO:0003735 ... G1SY53 39169182
    933700 9f1d:Bp (3.26) BS02 ZN N/A GO:0003735 ... G1SY53 39169182
    933701 9f1d:Br (3.26) BS01 rna N/A GO:0003735 ... G1U7L1 39169182
    933702 9f1d:Bs (3.26) BS01 rna N/A GO:0000027 ... G1SPK4 39169182
    933703 9f1d:Bt (3.26) BS01 rna N/A GO:0003723 ... G1SMR7 39169182
    933704 9f1d:Cu (3.26) BS01 rna N/A N/A P20290 39169182
    933705 9f1d:DB (3.26) BS01 rna N/A GO:0001525 ... Q9BXJ9 39169182
    933706 9f1d:DB (3.26) BS02 IHP N/A GO:0001525 ... Q9BXJ9 39169182
    933707 9f1d:EA (3.26) BS01 rna N/A GO:0004177 ... P53582 39169182
    933708 9f1i:H (1.38) BS01 peptide N/A N/A N/A 39020051
    933709 9f1i:H (1.38) BS02 FUC N/A N/A N/A 39020051
    933710 9f1i:H (1.38) BS03 PFX N/A N/A N/A 39020051
    933711 9f1i:I (1.38) BS01 peptide N/A N/A N/A 39020051
    933712 9f1i:I (1.38) BS02 FUC N/A N/A N/A 39020051
    933713 9f1i:I (1.38) BS03 PFX N/A N/A N/A 39020051
    933714 9f1i:L (1.38) BS01 peptide N/A N/A N/A 39020051
    933715 9f1i:M (1.38) BS01 peptide N/A N/A N/A 39020051
    933716 9f1j:A (1.13003) BS01 A1H84 N/A N/A O60885 N/A
    933717 9f1k:A (1.61) BS01 A1H81 N/A N/A O60885 N/A
    933718 9f1l:A (1.30001) BS01 A1H83 N/A N/A O60885 N/A
    933719 9f1m:A (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    933720 9f1m:B (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    933721 9f1m:C (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    933722 9f1m:D (1.90001) BS01 A1H80 N/A N/A O60885 N/A
    933723 9f1n:A (1.71) BS01 A1H9H N/A N/A O60885 N/A
    933724 9f1n:B (1.71) BS01 A1H9H N/A N/A O60885 N/A
    933725 9f1n:C (1.71) BS01 A1H9H N/A N/A O60885 N/A
    933726 9f1n:D (1.71) BS01 A1H9H N/A N/A O60885 N/A
    933727 9f1t:A (3.0) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    933728 9f1t:A (3.0) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    933729 9f1t:A (3.0) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    933730 9f1t:A (3.0) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    933731 9f1t:B (3.0) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    933732 9f1t:B (3.0) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    933733 9f1t:B (3.0) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    933734 9f1t:B (3.0) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    933735 9f23:A (1.59) BS01 A1H87 N/A GO:0006091 ... P42212 N/A
    933736 9f23:C (1.59) BS01 A1H87 N/A GO:0006091 ... P42212 N/A
    933737 9f23:C (1.59) BS02 PXN N/A GO:0006091 ... P42212 N/A
    933738 9f26:A (3.501) BS01 ZN N/A GO:0000428 ... Q9V292 39738083
    933739 9f28:A (1.85) BS01 ZN N/A GO:0000428 ... Q9V292 39738083
    933740 9f28:A (1.85) BS02 MG N/A GO:0000428 ... Q9V292 39738083
    933741 9f28:A (1.85) BS03 MG N/A GO:0000428 ... Q9V292 39738083
    933742 9f29:A (2.94) BS01 FE N/A GO:0003677 ... Q9V2F3 39738083
    933743 9f29:B (2.94) BS01 ZN N/A N/A P81409 39738083
    933744 9f29:B (2.94) BS02 ZN N/A N/A P81409 39738083
    933745 9f29:B (2.94) BS03 ZN N/A N/A P81409 39738083
    933746 9f2a:A (2.91) BS01 FE N/A GO:0003677 ... Q9V2F3 39738083
    933747 9f2a:B (2.91) BS01 ZN N/A N/A P81409 39738083
    933748 9f2a:B (2.91) BS02 ZN N/A N/A P81409 39738083
    933749 9f2a:B (2.91) BS03 ZN N/A N/A P81409 39738083
    933750 9f2h:A (1.3) BS01 657 N/A N/A P0DTC9 39541975
    933751 9f2i:A (1.45) BS01 A1H88 N/A N/A P0DTC9 39541975
    933752 9f2i:B (1.45) BS01 A1H88 N/A N/A P0DTC9 39541975
    933753 9f2k:A (2.48) BS01 NAD N/A GO:0004512 ... G0SDP4 39145930
    933754 9f2p:A (1.36) BS01 A1H9C N/A N/A Q9Z2X8 39418396
    933755 9f2q:A (1.2) BS01 A1H9B N/A N/A Q9Z2X8 39418396
    933756 9f2r:A (1.959) BS01 rna N/A GO:0003723 ... H6QM92 N/A
    933757 9f2r:A (1.959) BS02 rna N/A GO:0003723 ... H6QM92 N/A
    933758 9f2r:B (1.959) BS01 rna N/A GO:0001172 ... H6QM91 N/A
    933759 9f2r:B (1.959) BS02 rna N/A GO:0001172 ... H6QM91 N/A
    933760 9f2r:B (1.959) BS03 MG N/A GO:0001172 ... H6QM91 N/A
    933761 9f2r:C (1.959) BS01 rna N/A GO:0003723 ... H6QM90 N/A
    933762 9f2r:C (1.959) BS02 MGT N/A GO:0003723 ... H6QM90 N/A
    933763 9f2v:A (2.191) BS01 A1H9E N/A N/A P0DTD1 39817813
    933764 9f2v:B (2.191) BS01 A1H9E N/A N/A P0DTD1 39817813
    933765 9f2x:A (1.9) BS01 A1H9D N/A N/A P0DTD1 39817813
    933766 9f2x:B (1.9) BS01 A1H9D N/A N/A P0DTD1 39817813
    933767 9f32:A (2.1) BS01 A1H9M N/A N/A O75385 39716901
    933768 9f33:R (3.05) BS01 A1H9N N/A GO:0001591 ... P35462
    P42212
    39237617
    933769 9f34:R (3.09) BS01 A1H9N N/A GO:0001591 ... P35462
    P42212
    39237617
    933770 9f35:A (2.3) BS01 peptide N/A N/A P31947 39850253
    933771 9f37:A (1.905) BS01 rna N/A GO:0003723 ... H6QM92 N/A
    933772 9f37:A (1.905) BS02 rna N/A GO:0003723 ... H6QM92 N/A
    933773 9f37:B (1.905) BS01 rna N/A GO:0001172 ... H6QM91 N/A
    933774 9f37:B (1.905) BS02 rna N/A GO:0001172 ... H6QM91 N/A
    933775 9f37:B (1.905) BS03 CTP N/A GO:0001172 ... H6QM91 N/A
    933776 9f37:B (1.905) BS04 GTP N/A GO:0001172 ... H6QM91 N/A
    933777 9f37:B (1.905) BS05 MG N/A GO:0001172 ... H6QM91 N/A
    933778 9f37:B (1.905) BS06 MG N/A GO:0001172 ... H6QM91 N/A
    933779 9f37:C (1.905) BS01 rna N/A GO:0003723 ... H6QM90 N/A
    933780 9f37:C (1.905) BS02 MGT N/A GO:0003723 ... H6QM90 N/A
    933781 9f39:A (2.45) BS01 A1H9Y N/A N/A P0DTD1 39817813
    933782 9f3a:A (2.15) BS01 A1H9Z N/A N/A P0DTD1 39817813
    933783 9f3a:B (2.15) BS01 A1H9Z N/A N/A P0DTD1 39817813
    933784 9f3f:2 (2.4) BS01 7MG N/A N/A Q585L4 39814716
    933785 9f3q:A (2.75) BS01 YM2 N/A N/A P03300 39827284
    933786 9f3q:C (2.75) BS01 GSH N/A N/A P03300 39827284
    933787 9f3t:A (3.0) BS01 dna N/A N/A P03070 N/A
    933788 9f3t:A (3.0) BS02 ATP N/A N/A P03070 N/A
    933789 9f3t:B (3.0) BS01 dna N/A N/A P03070 N/A
    933790 9f3t:B (3.0) BS02 ATP N/A N/A P03070 N/A
    933791 9f3t:B (3.0) BS03 ATP N/A N/A P03070 N/A
    933792 9f3t:C (3.0) BS01 dna N/A N/A P03070 N/A
    933793 9f3t:C (3.0) BS02 ATP N/A N/A P03070 N/A
    933794 9f3t:C (3.0) BS03 ATP N/A N/A P03070 N/A
    933795 9f3t:D (3.0) BS01 dna N/A N/A P03070 N/A
    933796 9f3t:D (3.0) BS02 ATP N/A N/A P03070 N/A
    933797 9f3t:E (3.0) BS01 dna N/A N/A P03070 N/A
    933798 9f3t:E (3.0) BS02 ATP N/A N/A P03070 N/A
    933799 9f3t:F (3.0) BS01 dna N/A N/A P03070 N/A
    933800 9f3t:F (3.0) BS02 ATP N/A N/A P03070 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).