SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    933801 9f3u:A (3.0) BS01 dna N/A N/A P03070 N/A
    933802 9f3u:A (3.0) BS02 ATP N/A N/A P03070 N/A
    933803 9f3u:B (3.0) BS01 dna N/A N/A P03070 N/A
    933804 9f3u:B (3.0) BS02 ATP N/A N/A P03070 N/A
    933805 9f3u:B (3.0) BS03 ATP N/A N/A P03070 N/A
    933806 9f3u:C (3.0) BS01 dna N/A N/A P03070 N/A
    933807 9f3u:C (3.0) BS02 ATP N/A N/A P03070 N/A
    933808 9f3u:C (3.0) BS03 ATP N/A N/A P03070 N/A
    933809 9f3u:D (3.0) BS01 dna N/A N/A P03070 N/A
    933810 9f3u:D (3.0) BS02 ATP N/A N/A P03070 N/A
    933811 9f3u:E (3.0) BS01 dna N/A N/A P03070 N/A
    933812 9f3u:E (3.0) BS02 ATP N/A N/A P03070 N/A
    933813 9f3u:F (3.0) BS01 dna N/A N/A P03070 N/A
    933814 9f3u:F (3.0) BS02 ATP N/A N/A P03070 N/A
    933815 9f3v:A (1.943) BS01 A1H90 N/A N/A O43353 39444201
    933816 9f3v:B (1.943) BS01 A1H90 N/A N/A O43353 39444201
    933817 9f3w:A (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933818 9f3w:B (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933819 9f3w:C (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933820 9f3w:D (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933821 9f3w:E (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933822 9f3w:F (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933823 9f3w:G (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933824 9f3w:H (2.7) BS01 A1H9I 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933825 9f3x:A (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933826 9f3x:B (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933827 9f3x:C (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933828 9f3x:D (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933829 9f3x:E (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933830 9f3x:F (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933831 9f3x:G (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933832 9f3x:H (2.7) BS01 A1H9K 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933833 9f3y:A (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933834 9f3y:B (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933835 9f3y:C (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933836 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933837 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933838 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933839 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933840 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    933841 9f3z:A (3.5) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    933842 9f3z:A (3.5) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    933843 9f3z:A (3.5) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    933844 9f3z:A (3.5) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    933845 9f3z:B (3.5) BS01 CU N/A GO:0005507 ... Q04HQ8 39126090
    933846 9f3z:B (3.5) BS02 CU N/A GO:0005507 ... Q04HQ8 39126090
    933847 9f3z:B (3.5) BS03 CU N/A GO:0005507 ... Q04HQ8 39126090
    933848 9f3z:B (3.5) BS04 CU N/A GO:0005507 ... Q04HQ8 39126090
    933849 9f40:A (2.44) BS01 MAN ? N/A Q12200 39455279
    933850 9f40:A (2.44) BS02 ERG ? N/A Q12200 39455279
    933851 9f40:A (2.44) BS03 ZN ? N/A Q12200 39455279
    933852 9f40:A (2.44) BS04 ZN ? N/A Q12200 39455279
    933853 9f40:A (2.44) BS05 ZN ? N/A Q12200 39455279
    933854 9f40:B (2.44) BS01 ZN ? N/A Q12200 39455279
    933855 9f40:B (2.44) BS02 ERG ? N/A Q12200 39455279
    933856 9f40:B (2.44) BS03 ZN ? N/A Q12200 39455279
    933857 9f40:B (2.44) BS04 ZN ? N/A Q12200 39455279
    933858 9f40:B (2.44) BS05 ZN ? N/A Q12200 39455279
    933859 9f40:B (2.44) BS06 ZN ? N/A Q12200 39455279
    933860 9f40:C (2.44) BS01 ERG ? N/A Q12200 39455279
    933861 9f40:C (2.44) BS02 ZN ? N/A Q12200 39455279
    933862 9f40:C (2.44) BS03 ZN ? N/A Q12200 39455279
    933863 9f40:C (2.44) BS04 ZN ? N/A Q12200 39455279
    933864 9f40:C (2.44) BS05 ZN ? N/A Q12200 39455279
    933865 9f40:C (2.44) BS06 ZN ? N/A Q12200 39455279
    933866 9f40:D (2.44) BS01 MAN ? N/A Q12200 39455279
    933867 9f40:D (2.44) BS02 ZN ? N/A Q12200 39455279
    933868 9f40:D (2.44) BS03 ERG ? N/A Q12200 39455279
    933869 9f40:D (2.44) BS04 ZN ? N/A Q12200 39455279
    933870 9f40:D (2.44) BS05 ZN ? N/A Q12200 39455279
    933871 9f41:A (2.64) BS01 CLR ? N/A Q12200 39455279
    933872 9f41:A (2.64) BS02 ZN ? N/A Q12200 39455279
    933873 9f41:A (2.64) BS03 ZN ? N/A Q12200 39455279
    933874 9f41:B (2.64) BS01 CLR ? N/A Q12200 39455279
    933875 9f41:B (2.64) BS02 ZN ? N/A Q12200 39455279
    933876 9f41:B (2.64) BS03 ZN ? N/A Q12200 39455279
    933877 9f41:B (2.64) BS04 ZN ? N/A Q12200 39455279
    933878 9f41:B (2.64) BS05 ZN ? N/A Q12200 39455279
    933879 9f41:B (2.64) BS06 ZN ? N/A Q12200 39455279
    933880 9f41:C (2.64) BS01 MAN ? N/A Q12200 39455279
    933881 9f41:C (2.64) BS02 CLR ? N/A Q12200 39455279
    933882 9f41:C (2.64) BS03 ZN ? N/A Q12200 39455279
    933883 9f41:C (2.64) BS04 ZN ? N/A Q12200 39455279
    933884 9f41:C (2.64) BS05 ZN ? N/A Q12200 39455279
    933885 9f41:C (2.64) BS06 ZN ? N/A Q12200 39455279
    933886 9f41:C (2.64) BS07 ZN ? N/A Q12200 39455279
    933887 9f41:D (2.64) BS01 MAN ? N/A Q12200 39455279
    933888 9f41:D (2.64) BS02 ZN ? N/A Q12200 39455279
    933889 9f41:D (2.64) BS03 CLR ? N/A Q12200 39455279
    933890 9f41:D (2.64) BS04 ZN ? N/A Q12200 39455279
    933891 9f41:D (2.64) BS05 ZN ? N/A Q12200 39455279
    933892 9f42:E (3.27) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    933893 9f43:E (3.49) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    933894 9f44:A (3.68) BS01 IHP N/A GO:0000139 ... P42345 39141345
    933895 9f44:B (3.68) BS01 IHP N/A GO:0000139 ... P42345 39141345
    933896 9f44:E (3.68) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    933897 9f44:F (3.68) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    933898 9f45:A (3.74) BS01 IHP N/A GO:0000139 ... P42345 39141345
    933899 9f45:B (3.74) BS01 IHP N/A GO:0000139 ... P42345 39141345
    933900 9f45:E (3.74) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    933901 9f45:F (3.74) BS01 peptide N/A GO:0001558 ... Q8N122 39141345
    933902 9f46:A (2.45) BS01 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933903 9f46:A (2.45) BS02 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933904 9f46:A (2.45) BS03 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933905 9f46:A (2.45) BS04 ZN N/A GO:0046872 ... A0A1I9RYV3 39805018
    933906 9f46:B (2.45) BS01 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933907 9f46:B (2.45) BS02 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933908 9f46:B (2.45) BS03 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933909 9f46:B (2.45) BS04 ZN N/A GO:0046872 ... A0A1I9RYV3 39805018
    933910 9f47:A (2.9) BS01 402 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933911 9f47:A (2.9) BS02 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933912 9f47:A (2.9) BS03 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933913 9f47:A (2.9) BS04 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933914 9f47:A (2.9) BS05 ZN N/A GO:0046872 ... A0A1I9RYV3 39805018
    933915 9f47:B (2.9) BS01 402 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933916 9f47:B (2.9) BS02 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933917 9f47:B (2.9) BS03 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933918 9f47:B (2.9) BS04 SF4 N/A GO:0046872 ... A0A1I9RYV3 39805018
    933919 9f47:B (2.9) BS05 ZN N/A GO:0046872 ... A0A1I9RYV3 39805018
    933920 9f4d:A (1.5) BS01 JH1 ? GO:0003676 ... P09651 39763864
    933921 9f4e:A () BS01 VZM ? N/A N/A N/A
    933922 9f4f:A () BS01 A1H9T ? N/A N/A N/A
    933923 9f4g:A (1.4) BS01 SZE ? GO:0003676 ... P09651 39763864
    933924 9f4h:A (1.4) BS01 NUY ? GO:0003676 ... P09651 39763864
    933925 9f4h:A (1.4) BS02 NUY ? GO:0003676 ... P09651 39763864
    933926 9f4j:A (1.4) BS01 NWP ? GO:0003676 ... P09651 39763864
    933927 9f4k:A (1.8) BS01 A1H9R ? GO:0003676 ... P09651 39763864
    933928 9f4l:A (1.4) BS01 WGP ? GO:0003676 ... P09651 39763864
    933929 9f4m:A () BS01 A1H97 ? N/A N/A N/A
    933930 9f4n:A (1.4) BS01 O3J ? GO:0003676 ... P09651 39763864
    933931 9f4o:A (1.4) BS01 A1H95 ? GO:0003676 ... P09651 39763864
    933932 9f4p:A (1.4) BS01 Q49 ? GO:0003676 ... P09651 39763864
    933933 9f4q:A (1.4) BS01 A1H9S ? GO:0003676 ... P09651 39763864
    933934 9f4r:A (1.59) BS01 K3J ? GO:0003676 ... P09651 39763864
    933935 9f4s:A (1.4) BS01 JGA ? GO:0003676 ... P09651 39763864
    933936 9f4t:A (1.42) BS01 WZY ? GO:0003676 ... P09651 39763864
    933937 9f4u:A (1.4) BS01 LXA ? GO:0003676 ... P09651 39763864
    933938 9f4v:A (1.4) BS01 UQJ ? GO:0003676 ... P09651 39763864
    933939 9f4w:A (1.6) BS01 O0M ? GO:0003676 ... P09651 39763864
    933940 9f4x:A (1.6) BS01 HWH ? GO:0003676 ... P09651 39763864
    933941 9f4y:A (1.4) BS01 W0S ? GO:0003676 ... P09651 39763864
    933942 9f4z:A (1.6) BS01 9KS ? GO:0003676 ... P09651 39763864
    933943 9f50:A (1.5) BS01 K2G ? GO:0003676 ... P09651 39763864
    933944 9f51:A (1.5) BS01 A1H9V ? GO:0003676 ... P09651 39763864
    933945 9f52:A (1.5) BS01 A1H9W ? GO:0003676 ... P09651 39763864
    933946 9f53:A (1.8) BS01 K3A ? GO:0003676 ... P09651 39763864
    933947 9f54:A (1.7) BS01 K3Y ? GO:0003676 ... P09651 39763864
    933948 9f55:A (1.55) BS01 A1H9U ? GO:0003676 ... P09651 39763864
    933949 9f55:A (1.55) BS02 A1H9U ? GO:0003676 ... P09651 39763864
    933950 9f56:A (2.1) BS01 CA N/A N/A P00800 39291627
    933951 9f56:A (2.1) BS02 CA N/A N/A P00800 39291627
    933952 9f56:A (2.1) BS03 CA N/A N/A P00800 39291627
    933953 9f56:A (2.1) BS04 ZN N/A N/A P00800 39291627
    933954 9f5b:A (1.8) BS01 ZN N/A N/A P61968
    Q86U70
    39291627
    933955 9f5b:A (1.8) BS02 ZN N/A N/A P61968
    Q86U70
    39291627
    933956 9f5b:A (1.8) BS03 ZN N/A N/A P61968
    Q86U70
    39291627
    933957 9f5b:A (1.8) BS04 ZN N/A N/A P61968
    Q86U70
    39291627
    933958 9f5c:A (1.45) BS01 LJA ? GO:0003676 ... P09651 39763864
    933959 9f5d:A (1.6) BS01 A1H9X ? GO:0003676 ... P09651 39763864
    933960 9f5e:A (1.45) BS01 JFP ? GO:0003676 ... P09651 39763864
    933961 9f5f:A (1.4) BS01 W0J ? GO:0003676 ... P09651 39763864
    933962 9f5g:A (1.8) BS01 Z9I ? GO:0003676 ... P09651 39763864
    933963 9f5h:A (1.97) BS01 UDP N/A N/A Q09328 39287665
    933964 9f5h:A (1.97) BS02 MAN N/A N/A Q09328 39287665
    933965 9f5h:B (1.97) BS01 UDP N/A N/A Q09328 39287665
    933966 9f5i:A (3.0) BS01 dna N/A N/A P03070 N/A
    933967 9f5i:A (3.0) BS02 ATP N/A N/A P03070 N/A
    933968 9f5i:B (3.0) BS01 dna N/A N/A P03070 N/A
    933969 9f5i:B (3.0) BS02 ATP N/A N/A P03070 N/A
    933970 9f5i:C (3.0) BS01 dna N/A N/A P03070 N/A
    933971 9f5i:C (3.0) BS02 ATP N/A N/A P03070 N/A
    933972 9f5i:D (3.0) BS01 dna N/A N/A P03070 N/A
    933973 9f5i:D (3.0) BS02 ATP N/A N/A P03070 N/A
    933974 9f5i:E (3.0) BS01 dna N/A N/A P03070 N/A
    933975 9f5i:E (3.0) BS02 ATP N/A N/A P03070 N/A
    933976 9f5i:F (3.0) BS01 dna N/A N/A P03070 N/A
    933977 9f5i:F (3.0) BS02 ATP N/A N/A P03070 N/A
    933978 9f5k:A (1.7) BS01 ONQ ? GO:0003676 ... P09651 39763864
    933979 9f5q:A (1.95) BS01 ACO N/A GO:0016747 ... Q38AU6 39579771
    933980 9f5q:B (1.95) BS01 ACO N/A GO:0016747 ... Q38AU6 39579771
    933981 9f5u:A (1.15) BS01 COH N/A GO:0004392 ... P71119 39352411
    933982 9f66:A (1.85) BS01 COH N/A GO:0004392 ... P71119 39352411
    933983 9f67:2 (2.8) BS01 rna N/A N/A Q585L4 39814716
    933984 9f6c:A (2.33) BS01 MG N/A GO:0003774 ... Q9BE39 39196032
    933985 9f6c:A (2.33) BS02 6I6 N/A GO:0003774 ... Q9BE39 39196032
    933986 9f6c:A (2.33) BS03 ADP N/A GO:0003774 ... Q9BE39 39196032
    933987 9f6c:B (2.33) BS01 MG N/A GO:0003774 ... Q9BE39 39196032
    933988 9f6c:B (2.33) BS02 6I6 N/A GO:0003774 ... Q9BE39 39196032
    933989 9f6c:B (2.33) BS03 ADP N/A GO:0003774 ... Q9BE39 39196032
    933990 9f6d:A (3.6) BS01 dna N/A GO:0000166 ... Q07864 39112807
    933991 9f6d:A (3.6) BS02 dna N/A GO:0000166 ... Q07864 39112807
    933992 9f6d:A (3.6) BS03 SF4 N/A GO:0000166 ... Q07864 39112807
    933993 9f6d:A (3.6) BS04 DDS N/A GO:0000166 ... Q07864 39112807
    933994 9f6d:A (3.6) BS05 MG N/A GO:0000166 ... Q07864 39112807
    933995 9f6e:A (3.74) BS01 dna N/A GO:0000166 ... Q07864 39112807
    933996 9f6e:A (3.74) BS02 dna N/A GO:0000166 ... Q07864 39112807
    933997 9f6e:A (3.74) BS03 SF4 N/A GO:0000166 ... Q07864 39112807
    933998 9f6e:A (3.74) BS04 DDS N/A GO:0000166 ... Q07864 39112807
    933999 9f6f:A (3.75) BS01 dna N/A GO:0000166 ... Q07864 39112807
    934000 9f6f:A (3.75) BS02 dna N/A GO:0000166 ... Q07864 39112807

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).