SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    934201 9f9m:C (2.469) BS02 A1IA4 N/A GO:0003677 ... Q96NY9 39015284
    934202 9f9n:A (3.0) BS01 dna N/A N/A P03070 N/A
    934203 9f9n:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934204 9f9n:B (3.0) BS01 dna N/A N/A P03070 N/A
    934205 9f9n:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934206 9f9n:B (3.0) BS03 ATP N/A N/A P03070 N/A
    934207 9f9n:C (3.0) BS01 dna N/A N/A P03070 N/A
    934208 9f9n:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934209 9f9n:D (3.0) BS01 dna N/A N/A P03070 N/A
    934210 9f9n:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934211 9f9n:E (3.0) BS01 dna N/A N/A P03070 N/A
    934212 9f9n:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934213 9f9n:E (3.0) BS03 ATP N/A N/A P03070 N/A
    934214 9f9n:F (3.0) BS01 dna N/A N/A P03070 N/A
    934215 9f9n:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934216 9f9o:A (3.0) BS01 dna N/A N/A P03070 N/A
    934217 9f9o:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934218 9f9o:B (3.0) BS01 dna N/A N/A P03070 N/A
    934219 9f9o:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934220 9f9o:B (3.0) BS03 ATP N/A N/A P03070 N/A
    934221 9f9o:C (3.0) BS01 dna N/A N/A P03070 N/A
    934222 9f9o:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934223 9f9o:C (3.0) BS03 ATP N/A N/A P03070 N/A
    934224 9f9o:D (3.0) BS01 dna N/A N/A P03070 N/A
    934225 9f9o:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934226 9f9o:E (3.0) BS01 dna N/A N/A P03070 N/A
    934227 9f9o:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934228 9f9o:E (3.0) BS03 ATP N/A N/A P03070 N/A
    934229 9f9o:F (3.0) BS01 dna N/A N/A P03070 N/A
    934230 9f9o:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934231 9f9s:CN (2.9) BS01 rna N/A GO:0003677 ... O14467 39566505
    934232 9f9s:CN (2.9) BS02 rna N/A GO:0003677 ... O14467 39566505
    934233 9f9s:LA (2.9) BS01 rna N/A GO:0000027 ... P05739 39566505
    934234 9f9s:LB (2.9) BS01 rna N/A GO:0000463 ... P05737 39566505
    934235 9f9s:LB (2.9) BS02 rna N/A GO:0000463 ... P05737 39566505
    934236 9f9s:LC (2.9) BS01 rna N/A GO:0000470 ... P17076 39566505
    934237 9f9s:LC (2.9) BS02 rna N/A GO:0000470 ... P17076 39566505
    934238 9f9s:LD (2.9) BS01 rna N/A GO:0002181 ... P05738 39566505
    934239 9f9s:LE (2.9) BS01 rna N/A GO:0000027 ... P41805 39566505
    934240 9f9s:LE (2.9) BS02 rna N/A GO:0000027 ... P41805 39566505
    934241 9f9s:LF (2.9) BS01 rna N/A GO:0000027 ... P0C0W9 39566505
    934242 9f9s:LF (2.9) BS02 rna N/A GO:0000027 ... P0C0W9 39566505
    934243 9f9s:LG (2.9) BS01 rna N/A GO:0002181 ... Q12690 39566505
    934244 9f9s:LG (2.9) BS02 rna N/A GO:0002181 ... Q12690 39566505
    934245 9f9s:LH (2.9) BS01 rna N/A GO:0000027 ... P36105 39566505
    934246 9f9s:LI (2.9) BS01 rna N/A GO:0002181 ... P05748 39566505
    934247 9f9s:LI (2.9) BS02 rna N/A GO:0002181 ... P05748 39566505
    934248 9f9s:LJ (2.9) BS01 rna N/A GO:0000470 ... P26784 39566505
    934249 9f9s:LK (2.9) BS01 rna N/A GO:0000448 ... P05740 39566505
    934250 9f9s:LK (2.9) BS02 rna N/A GO:0000448 ... P05740 39566505
    934251 9f9s:LL (2.9) BS01 rna N/A GO:0002181 ... P0CX49 39566505
    934252 9f9s:LM (2.9) BS01 rna N/A GO:0002181 ... P0CX82 39566505
    934253 9f9s:LM (2.9) BS02 rna N/A GO:0002181 ... P0CX82 39566505
    934254 9f9s:LN (2.9) BS01 rna N/A GO:0002181 ... P0CX23 39566505
    934255 9f9s:LN (2.9) BS02 rna N/A GO:0002181 ... P0CX23 39566505
    934256 9f9s:LO (2.9) BS01 rna N/A GO:0002181 ... Q02753 39566505
    934257 9f9s:LO (2.9) BS02 rna N/A GO:0002181 ... Q02753 39566505
    934258 9f9s:La (2.9) BS01 rna N/A GO:0002181 ... P0CX41 39566505
    934259 9f9s:Lb (2.9) BS01 rna N/A GO:0002181 ... P0CX25 39566505
    934260 9f9s:Lb (2.9) BS02 rna N/A GO:0002181 ... P0CX25 39566505
    934261 9f9s:Lb (2.9) BS03 ZN N/A GO:0002181 ... P0CX25 39566505
    934262 9f9s:Lc (2.9) BS01 rna N/A GO:0002181 ... P0CX27 39566505
    934263 9f9s:Lc (2.9) BS02 ZN N/A GO:0002181 ... P0CX27 39566505
    934264 9f9s:Le (2.9) BS01 rna N/A GO:0000027 ... P0CH08 39566505
    934265 9f9s:Le (2.9) BS02 ZN N/A GO:0000027 ... P0CH08 39566505
    934266 9f9s:Lf (2.9) BS01 rna N/A GO:0002181 ... P04650 39566505
    934267 9f9s:Lf (2.9) BS02 rna N/A GO:0002181 ... P04650 39566505
    934268 9f9s:Lg (2.9) BS01 rna N/A GO:0002181 ... P49167 39566505
    934269 9f9s:Lh (2.9) BS01 rna N/A GO:0000448 ... P49166 39566505
    934270 9f9s:Lh (2.9) BS02 rna N/A GO:0000448 ... P49166 39566505
    934271 9f9s:Lh (2.9) BS03 ZN N/A GO:0000448 ... P49166 39566505
    934272 9f9s:Li (2.9) BS01 rna N/A GO:0002181 ... P05745 39566505
    934273 9f9s:Lj (2.9) BS01 rna N/A GO:0000463 ... P0CX84 39566505
    934274 9f9s:Lj (2.9) BS02 rna N/A GO:0000463 ... P0CX84 39566505
    934275 9f9s:Lk (2.9) BS01 rna N/A GO:0002181 ... P87262 39566505
    934276 9f9s:Lk (2.9) BS02 ZN N/A GO:0002181 ... P87262 39566505
    934277 9f9s:Ll (2.9) BS01 rna N/A GO:0000027 ... P05744 39566505
    934278 9f9s:Lm (2.9) BS01 rna N/A GO:0002181 ... P38061 39566505
    934279 9f9s:Ln (2.9) BS01 rna N/A GO:0002181 ... P0C2H8 39566505
    934280 9f9s:Lo (2.9) BS01 rna N/A GO:0002181 ... P14120 39566505
    934281 9f9s:Lp (2.9) BS01 rna N/A GO:0002181 ... P05747 39566505
    934282 9f9s:Lq (2.9) BS01 rna N/A GO:0002181 ... P02406 39566505
    934283 9f9s:Lr (2.9) BS01 rna N/A GO:0002181 ... P0C2H6 39566505
    934284 9f9s:Ls (2.9) BS01 rna N/A GO:0002181 ... P05743 39566505
    934285 9f9s:Ls (2.9) BS02 rna N/A GO:0002181 ... P05743 39566505
    934286 9f9s:Lt (2.9) BS01 rna N/A GO:0000027 ... P04456 39566505
    934287 9f9s:Lt (2.9) BS02 rna N/A GO:0000027 ... P04456 39566505
    934288 9f9s:Lu (2.9) BS01 rna N/A GO:0002181 ... P04449 39566505
    934289 9f9s:Lu (2.9) BS02 rna N/A GO:0002181 ... P04449 39566505
    934290 9f9s:Lv (2.9) BS01 rna N/A GO:0002181 ... P05749 39566505
    934291 9f9s:Lw (2.9) BS01 rna N/A GO:0002181 ... P0CX45 39566505
    934292 9f9s:Lw (2.9) BS02 rna N/A GO:0002181 ... P0CX45 39566505
    934293 9f9s:Lx (2.9) BS01 rna N/A GO:0000027 ... P14126 39566505
    934294 9f9s:Ly (2.9) BS01 rna N/A GO:0002181 ... P10664 39566505
    934295 9f9s:Ly (2.9) BS02 rna N/A GO:0002181 ... P10664 39566505
    934296 9f9s:Lz (2.9) BS01 rna N/A GO:0000027 ... P26321 39566505
    934297 9f9s:Lz (2.9) BS02 rna N/A GO:0000027 ... P26321 39566505
    934298 9f9s:MA (2.9) BS01 rna N/A GO:0000027 ... Q02326 39566505
    934299 9f9s:MB (2.9) BS01 rna N/A GO:0000463 ... P05737 39566505
    934300 9f9s:MB (2.9) BS02 rna N/A GO:0000463 ... P05737 39566505
    934301 9f9s:MC (2.9) BS01 rna N/A GO:0000470 ... P17076 39566505
    934302 9f9s:MC (2.9) BS02 rna N/A GO:0000470 ... P17076 39566505
    934303 9f9s:MD (2.9) BS01 rna N/A GO:0002181 ... P05738 39566505
    934304 9f9s:ME (2.9) BS01 rna N/A GO:0000027 ... P41805 39566505
    934305 9f9s:ME (2.9) BS02 rna N/A GO:0000027 ... P41805 39566505
    934306 9f9s:ME (2.9) BS03 rna N/A GO:0000027 ... P41805 39566505
    934307 9f9s:MF (2.9) BS01 rna N/A GO:0000027 ... P0C0W9 39566505
    934308 9f9s:MF (2.9) BS02 rna N/A GO:0000027 ... P0C0W9 39566505
    934309 9f9s:MG (2.9) BS01 rna N/A GO:0002181 ... Q12690 39566505
    934310 9f9s:MG (2.9) BS02 rna N/A GO:0002181 ... Q12690 39566505
    934311 9f9s:MH (2.9) BS01 rna N/A GO:0000027 ... P36105 39566505
    934312 9f9s:MI (2.9) BS01 rna N/A GO:0002181 ... P05748 39566505
    934313 9f9s:MI (2.9) BS02 rna N/A GO:0002181 ... P05748 39566505
    934314 9f9s:MJ (2.9) BS01 rna N/A GO:0000470 ... P26784 39566505
    934315 9f9s:MK (2.9) BS01 rna N/A GO:0000448 ... P05740 39566505
    934316 9f9s:MK (2.9) BS02 rna N/A GO:0000448 ... P05740 39566505
    934317 9f9s:ML (2.9) BS01 rna N/A GO:0002181 ... P0CX49 39566505
    934318 9f9s:MM (2.9) BS01 rna N/A GO:0002181 ... P0CX82 39566505
    934319 9f9s:MM (2.9) BS02 rna N/A GO:0002181 ... P0CX82 39566505
    934320 9f9s:MN (2.9) BS01 rna N/A GO:0002181 ... P0CX23 39566505
    934321 9f9s:MN (2.9) BS02 rna N/A GO:0002181 ... P0CX23 39566505
    934322 9f9s:MO (2.9) BS01 rna N/A GO:0002181 ... Q02753 39566505
    934323 9f9s:MO (2.9) BS02 rna N/A GO:0002181 ... Q02753 39566505
    934324 9f9s:MP (2.9) BS01 rna N/A GO:0000027 ... P0CX53 39566505
    934325 9f9s:MQ (2.9) BS01 rna N/A GO:0000027 ... P05317 39566505
    934326 9f9s:Ma (2.9) BS01 rna N/A GO:0002181 ... P0CX41 39566505
    934327 9f9s:Mb (2.9) BS01 rna N/A GO:0002181 ... P0CX25 39566505
    934328 9f9s:Mb (2.9) BS02 rna N/A GO:0002181 ... P0CX25 39566505
    934329 9f9s:Mb (2.9) BS03 ZN N/A GO:0002181 ... P0CX25 39566505
    934330 9f9s:Mc (2.9) BS01 rna N/A GO:0002181 ... P0CX27 39566505
    934331 9f9s:Mc (2.9) BS02 rna N/A GO:0002181 ... P0CX27 39566505
    934332 9f9s:Mc (2.9) BS03 ZN N/A GO:0002181 ... P0CX27 39566505
    934333 9f9s:Me (2.9) BS01 rna N/A GO:0000027 ... P0CH08 39566505
    934334 9f9s:Me (2.9) BS02 ZN N/A GO:0000027 ... P0CH08 39566505
    934335 9f9s:Mf (2.9) BS01 rna N/A GO:0002181 ... P04650 39566505
    934336 9f9s:Mf (2.9) BS02 rna N/A GO:0002181 ... P04650 39566505
    934337 9f9s:Mg (2.9) BS01 rna N/A GO:0002181 ... P49167 39566505
    934338 9f9s:Mh (2.9) BS01 rna N/A GO:0000448 ... P49166 39566505
    934339 9f9s:Mh (2.9) BS02 rna N/A GO:0000448 ... P49166 39566505
    934340 9f9s:Mh (2.9) BS03 ZN N/A GO:0000448 ... P49166 39566505
    934341 9f9s:Mi (2.9) BS01 rna N/A GO:0002181 ... P05745 39566505
    934342 9f9s:Mj (2.9) BS01 rna N/A GO:0000463 ... P0CX84 39566505
    934343 9f9s:Mj (2.9) BS02 rna N/A GO:0000463 ... P0CX84 39566505
    934344 9f9s:Mk (2.9) BS01 rna N/A GO:0002181 ... P87262 39566505
    934345 9f9s:Mk (2.9) BS02 ZN N/A GO:0002181 ... P87262 39566505
    934346 9f9s:Ml (2.9) BS01 rna N/A GO:0000027 ... P05744 39566505
    934347 9f9s:Mm (2.9) BS01 rna N/A GO:0002181 ... P38061 39566505
    934348 9f9s:Mn (2.9) BS01 rna N/A GO:0002181 ... P0C2H8 39566505
    934349 9f9s:Mo (2.9) BS01 rna N/A GO:0002181 ... P14120 39566505
    934350 9f9s:Mp (2.9) BS01 rna N/A GO:0002181 ... P05747 39566505
    934351 9f9s:Mq (2.9) BS01 rna N/A GO:0002181 ... P02406 39566505
    934352 9f9s:Mr (2.9) BS01 rna N/A GO:0002181 ... P0C2H6 39566505
    934353 9f9s:Ms (2.9) BS01 rna N/A GO:0002181 ... P05743 39566505
    934354 9f9s:Ms (2.9) BS02 rna N/A GO:0002181 ... P05743 39566505
    934355 9f9s:Mt (2.9) BS01 rna N/A GO:0000027 ... P04456 39566505
    934356 9f9s:Mt (2.9) BS02 rna N/A GO:0000027 ... P04456 39566505
    934357 9f9s:Mu (2.9) BS01 rna N/A GO:0002181 ... P04449 39566505
    934358 9f9s:Mv (2.9) BS01 rna N/A GO:0002181 ... P05749 39566505
    934359 9f9s:Mw (2.9) BS01 rna N/A GO:0002181 ... P0CX45 39566505
    934360 9f9s:Mw (2.9) BS02 rna N/A GO:0002181 ... P0CX45 39566505
    934361 9f9s:Mx (2.9) BS01 rna N/A GO:0000027 ... P14126 39566505
    934362 9f9s:My (2.9) BS01 rna N/A GO:0002181 ... P10664 39566505
    934363 9f9s:My (2.9) BS02 rna N/A GO:0002181 ... P10664 39566505
    934364 9f9s:Mz (2.9) BS01 rna N/A GO:0000027 ... P26321 39566505
    934365 9f9s:Mz (2.9) BS02 rna N/A GO:0000027 ... P26321 39566505
    934366 9f9s:RA (2.9) BS01 rna N/A GO:0000054 ... P39938 39566505
    934367 9f9s:RA (2.9) BS02 rna N/A GO:0000054 ... P39938 39566505
    934368 9f9s:RB (2.9) BS01 rna N/A GO:0000028 ... P35997 39566505
    934369 9f9s:RB (2.9) BS02 ZN N/A GO:0000028 ... P35997 39566505
    934370 9f9s:RC (2.9) BS01 rna N/A GO:0000028 ... Q3E7X9 39566505
    934371 9f9s:RC (2.9) BS02 rna N/A GO:0000028 ... Q3E7X9 39566505
    934372 9f9s:RD (2.9) BS01 rna N/A GO:0002181 ... P41057 39566505
    934373 9f9s:RE (2.9) BS01 rna N/A GO:0002181 ... P0CX33 39566505
    934374 9f9s:RF (2.9) BS01 rna N/A GO:0000028 ... P05759 39566505
    934375 9f9s:RG (2.9) BS01 rna N/A GO:0001965 ... P38011 39566505
    934376 9f9s:Ra (2.9) BS01 rna N/A GO:0000028 ... P32905 39566505
    934377 9f9s:Rb (2.9) BS01 rna N/A GO:0000462 ... P33442 39566505
    934378 9f9s:Rb (2.9) BS02 rna N/A GO:0000462 ... P33442 39566505
    934379 9f9s:Rc (2.9) BS01 rna N/A GO:0000054 ... P25443 39566505
    934380 9f9s:Rc (2.9) BS02 rna N/A GO:0000054 ... P25443 39566505
    934381 9f9s:Rd (2.9) BS01 rna N/A GO:0000054 ... P05750 39566505
    934382 9f9s:Rd (2.9) BS02 rna N/A GO:0000054 ... P05750 39566505
    934383 9f9s:Re (2.9) BS01 rna N/A GO:0002181 ... P0CX35 39566505
    934384 9f9s:Rf (2.9) BS01 rna N/A GO:0000028 ... P26783 39566505
    934385 9f9s:Rf (2.9) BS02 rna N/A GO:0000028 ... P26783 39566505
    934386 9f9s:Rg (2.9) BS01 rna N/A GO:0000462 ... P0CX37 39566505
    934387 9f9s:Rh (2.9) BS01 rna N/A GO:0002181 ... P26786 39566505
    934388 9f9s:Ri (2.9) BS01 rna N/A GO:0000462 ... P0CX39 39566505
    934389 9f9s:Rj (2.9) BS01 rna N/A GO:0000462 ... O13516 39566505
    934390 9f9s:Rk (2.9) BS01 rna N/A GO:0000054 ... Q08745 39566505
    934391 9f9s:Rl (2.9) BS01 rna N/A GO:0000028 ... P0CX47 39566505
    934392 9f9s:Rm (2.9) BS01 rna N/A GO:0000028 ... P48589 39566505
    934393 9f9s:Rn (2.9) BS01 rna N/A GO:0000462 ... P05756 39566505
    934394 9f9s:Ro (2.9) BS01 rna N/A GO:0000028 ... P39516 39566505
    934395 9f9s:Rp (2.9) BS01 rna N/A GO:0000028 ... Q01855 39566505
    934396 9f9s:Rq (2.9) BS01 rna N/A GO:0000462 ... P0CX51 39566505
    934397 9f9s:Rr (2.9) BS01 rna N/A GO:0000028 ... P02407 39566505
    934398 9f9s:Rs (2.9) BS01 rna N/A GO:0000054 ... P0CX55 39566505
    934399 9f9s:Rt (2.9) BS01 rna N/A GO:0000028 ... P07280 39566505
    934400 9f9s:Ru (2.9) BS01 rna N/A GO:0000462 ... P38701 39566505

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).