SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    934401 9f9s:Rv (2.9) BS01 rna N/A GO:0000447 ... P0C0V8 39566505
    934402 9f9s:Rw (2.9) BS01 rna N/A GO:0002181 ... P0C0W1 39566505
    934403 9f9s:Rx (2.9) BS01 rna N/A GO:0000462 ... P0CX29 39566505
    934404 9f9s:Ry (2.9) BS01 rna N/A GO:0000462 ... P0CX31 39566505
    934405 9f9s:Rz (2.9) BS01 rna N/A GO:0002181 ... Q3E792 39566505
    934406 9f9s:SA (2.9) BS01 rna N/A GO:0000054 ... P39938 39566505
    934407 9f9s:SB (2.9) BS01 rna N/A GO:0000028 ... P35997 39566505
    934408 9f9s:SC (2.9) BS01 rna N/A GO:0000028 ... P0C0X0 39566505
    934409 9f9s:SC (2.9) BS02 rna N/A GO:0000028 ... P0C0X0 39566505
    934410 9f9s:SD (2.9) BS01 rna N/A GO:0002181 ... P41057 39566505
    934411 9f9s:SD (2.9) BS02 ZN N/A GO:0002181 ... P41057 39566505
    934412 9f9s:SE (2.9) BS01 rna N/A GO:0002181 ... P0CX33 39566505
    934413 9f9s:SF (2.9) BS01 rna N/A GO:0000028 ... P05759 39566505
    934414 9f9s:SF (2.9) BS02 ZN N/A GO:0000028 ... P05759 39566505
    934415 9f9s:SG (2.9) BS01 rna N/A GO:0001965 ... P38011 39566505
    934416 9f9s:Sa (2.9) BS01 rna N/A GO:0000028 ... P32905 39566505
    934417 9f9s:Sb (2.9) BS01 rna N/A GO:0000462 ... P33442 39566505
    934418 9f9s:Sc (2.9) BS01 rna N/A GO:0000054 ... P25443 39566505
    934419 9f9s:Sd (2.9) BS01 rna N/A GO:0000054 ... P05750 39566505
    934420 9f9s:Se (2.9) BS01 rna N/A GO:0002181 ... P0CX35 39566505
    934421 9f9s:Se (2.9) BS02 MG N/A GO:0002181 ... P0CX35 39566505
    934422 9f9s:Sf (2.9) BS01 rna N/A GO:0000028 ... P26783 39566505
    934423 9f9s:Sf (2.9) BS02 rna N/A GO:0000028 ... P26783 39566505
    934424 9f9s:Sf (2.9) BS03 MG N/A GO:0000028 ... P26783 39566505
    934425 9f9s:Sg (2.9) BS01 rna N/A GO:0000462 ... P0CX37 39566505
    934426 9f9s:Sh (2.9) BS01 rna N/A GO:0002181 ... P26786 39566505
    934427 9f9s:Si (2.9) BS01 rna N/A GO:0000462 ... P0CX39 39566505
    934428 9f9s:Si (2.9) BS02 rna N/A GO:0000462 ... P0CX39 39566505
    934429 9f9s:Sj (2.9) BS01 rna N/A GO:0000462 ... O13516 39566505
    934430 9f9s:Sk (2.9) BS01 rna N/A GO:0000054 ... Q08745 39566505
    934431 9f9s:Sl (2.9) BS01 rna N/A GO:0000028 ... P0CX47 39566505
    934432 9f9s:Sm (2.9) BS01 rna N/A GO:0000028 ... P48589 39566505
    934433 9f9s:Sn (2.9) BS01 rna N/A GO:0000462 ... P05756 39566505
    934434 9f9s:So (2.9) BS01 rna N/A GO:0000028 ... P06367 39566505
    934435 9f9s:Sp (2.9) BS01 rna N/A GO:0000028 ... Q01855 39566505
    934436 9f9s:Sq (2.9) BS01 rna N/A GO:0000462 ... P0CX51 39566505
    934437 9f9s:Sr (2.9) BS01 rna N/A GO:0000028 ... P14127 39566505
    934438 9f9s:Ss (2.9) BS01 rna N/A GO:0000054 ... P0CX55 39566505
    934439 9f9s:St (2.9) BS01 rna N/A GO:0000028 ... P07280 39566505
    934440 9f9s:Su (2.9) BS01 rna N/A GO:0000462 ... P38701 39566505
    934441 9f9s:Sv (2.9) BS01 rna N/A GO:0000447 ... P0C0V8 39566505
    934442 9f9s:Sw (2.9) BS01 rna N/A GO:0002181 ... P0C0W1 39566505
    934443 9f9s:Sx (2.9) BS01 rna N/A GO:0000462 ... P0CX29 39566505
    934444 9f9s:Sx (2.9) BS02 MG N/A GO:0000462 ... P0CX29 39566505
    934445 9f9s:Sy (2.9) BS01 rna N/A GO:0000462 ... P0CX31 39566505
    934446 9f9s:Sz (2.9) BS01 rna N/A GO:0002181 ... Q3E792 39566505
    934447 9f9s:Sz (2.9) BS02 rna N/A GO:0002181 ... Q3E792 39566505
    934448 9f9u:A (1.68) BS01 ZN N/A GO:0046872 ... Q980V4 39504966
    934449 9f9v:B (1.57) BS01 CA N/A N/A M5T2H2 39738071
    934450 9f9w:A (3.0) BS01 dna N/A N/A P03070 N/A
    934451 9f9w:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934452 9f9w:B (3.0) BS01 dna N/A N/A P03070 N/A
    934453 9f9w:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934454 9f9w:B (3.0) BS03 ATP N/A N/A P03070 N/A
    934455 9f9w:C (3.0) BS01 dna N/A N/A P03070 N/A
    934456 9f9w:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934457 9f9w:C (3.0) BS03 ATP N/A N/A P03070 N/A
    934458 9f9w:D (3.0) BS01 dna N/A N/A P03070 N/A
    934459 9f9w:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934460 9f9w:E (3.0) BS01 dna N/A N/A P03070 N/A
    934461 9f9w:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934462 9f9w:E (3.0) BS03 ATP N/A N/A P03070 N/A
    934463 9f9w:F (3.0) BS01 dna N/A N/A P03070 N/A
    934464 9f9w:F (3.0) BS02 ADP N/A N/A P03070 N/A
    934465 9f9x:A (3.0) BS01 dna N/A N/A P03070 N/A
    934466 9f9x:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934467 9f9x:B (3.0) BS01 dna N/A N/A P03070 N/A
    934468 9f9x:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934469 9f9x:C (3.0) BS01 dna N/A N/A P03070 N/A
    934470 9f9x:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934471 9f9x:D (3.0) BS01 dna N/A N/A P03070 N/A
    934472 9f9x:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934473 9f9x:E (3.0) BS01 dna N/A N/A P03070 N/A
    934474 9f9x:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934475 9f9x:F (3.0) BS01 dna N/A N/A P03070 N/A
    934476 9f9x:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934477 9f9z:A (2.279) BS01 A1IBI N/A GO:0000423 ... P04062 38932616
    934478 9fa1:A (3.0) BS01 dna N/A N/A P03070 N/A
    934479 9fa1:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934480 9fa1:B (3.0) BS01 dna N/A N/A P03070 N/A
    934481 9fa1:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934482 9fa1:B (3.0) BS03 ATP N/A N/A P03070 N/A
    934483 9fa1:C (3.0) BS01 dna N/A N/A P03070 N/A
    934484 9fa1:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934485 9fa1:C (3.0) BS03 ATP N/A N/A P03070 N/A
    934486 9fa1:D (3.0) BS01 dna N/A N/A P03070 N/A
    934487 9fa1:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934488 9fa1:E (3.0) BS01 dna N/A N/A P03070 N/A
    934489 9fa1:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934490 9fa1:E (3.0) BS03 ATP N/A N/A P03070 N/A
    934491 9fa1:F (3.0) BS01 dna N/A N/A P03070 N/A
    934492 9fa1:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934493 9fa2:A (3.0) BS01 dna N/A N/A P03070 N/A
    934494 9fa2:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934495 9fa2:B (3.0) BS01 dna N/A N/A P03070 N/A
    934496 9fa2:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934497 9fa2:B (3.0) BS03 ATP N/A N/A P03070 N/A
    934498 9fa2:C (3.0) BS01 dna N/A N/A P03070 N/A
    934499 9fa2:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934500 9fa2:C (3.0) BS03 ATP N/A N/A P03070 N/A
    934501 9fa2:D (3.0) BS01 dna N/A N/A P03070 N/A
    934502 9fa2:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934503 9fa2:E (3.0) BS01 dna N/A N/A P03070 N/A
    934504 9fa2:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934505 9fa2:F (3.0) BS01 dna N/A N/A P03070 N/A
    934506 9fa2:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934507 9fa3:A (1.36) BS01 A1IBC N/A GO:0004348 ... P04062 38932616
    934508 9fa6:A (1.49) BS01 A1IBE N/A GO:0004348 ... P04062 38932616
    934509 9fa6:A (1.49) BS02 A1IBG N/A GO:0004348 ... P04062 38932616
    934510 9fa6:A (1.49) BS03 A1IBE N/A GO:0004348 ... P04062 38932616
    934511 9fa9:A (2.75) BS01 A1IBS N/A N/A P21404 39292620
    934512 9fad:A (1.8) BS01 A1IBD N/A GO:0004348 ... P04062 38932616
    934513 9fae:A (1.57354) BS01 PKM N/A N/A D4N3K6 39883726
    934514 9fae:A (1.57354) BS02 PKM N/A N/A D4N3K6 39883726
    934515 9fae:B (1.57354) BS01 PKM N/A N/A D4N3K6 39883726
    934516 9fae:B (1.57354) BS02 PKM N/A N/A D4N3K6 39883726
    934517 9fae:C (1.57354) BS01 PKM N/A N/A D4N3K6 39883726
    934518 9fae:C (1.57354) BS02 PKM N/A N/A D4N3K6 39883726
    934519 9faf:A (1.76) BS01 ANA N/A N/A D4N3K6 39883726
    934520 9faf:A (1.76) BS02 ANA N/A N/A D4N3K6 39883726
    934521 9faf:B (1.76) BS01 ANA N/A N/A D4N3K6 39883726
    934522 9faf:B (1.76) BS02 ANA N/A N/A D4N3K6 39883726
    934523 9faf:C (1.76) BS01 ANA N/A N/A D4N3K6 39883726
    934524 9fag:A (1.9) BS01 SIO N/A N/A D4N3K6 39883726
    934525 9fag:A (1.9) BS02 SIO N/A N/A D4N3K6 39883726
    934526 9fag:B (1.9) BS01 SIO N/A N/A D4N3K6 39883726
    934527 9fag:C (1.9) BS01 SIO N/A N/A D4N3K6 39883726
    934528 9fag:C (1.9) BS02 SIO N/A N/A D4N3K6 39883726
    934529 9fah:A (1.65337) BS01 ANA N/A N/A Q64823 39883726
    934530 9fah:A (1.65337) BS02 ZN N/A N/A Q64823 39883726
    934531 9fah:B (1.65337) BS01 ANA N/A N/A Q64823 39883726
    934532 9fah:C (1.65337) BS01 ANA N/A N/A Q64823 39883726
    934533 9fah:C (1.65337) BS02 ZN N/A N/A Q64823 39883726
    934534 9fal:A (1.39) BS01 A1IBQ N/A GO:0004348 ... P04062 38932616
    934535 9fal:A (1.39) BS02 BAQ N/A GO:0004348 ... P04062 38932616
    934536 9fay:A (1.4) BS01 A1IBR N/A GO:0004348 ... P04062 38932616
    934537 9faz:A (1.63) BS01 A1IBP N/A GO:0004348 ... P04062 38932616
    934538 9fb0:A (3.0) BS01 dna N/A N/A P03070 N/A
    934539 9fb0:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934540 9fb0:B (3.0) BS01 dna N/A N/A P03070 N/A
    934541 9fb0:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934542 9fb0:B (3.0) BS03 ATP N/A N/A P03070 N/A
    934543 9fb0:C (3.0) BS01 dna N/A N/A P03070 N/A
    934544 9fb0:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934545 9fb0:C (3.0) BS03 ATP N/A N/A P03070 N/A
    934546 9fb0:D (3.0) BS01 dna N/A N/A P03070 N/A
    934547 9fb0:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934548 9fb0:E (3.0) BS01 dna N/A N/A P03070 N/A
    934549 9fb0:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934550 9fb0:E (3.0) BS03 ATP N/A N/A P03070 N/A
    934551 9fb0:F (3.0) BS01 dna N/A N/A P03070 N/A
    934552 9fb0:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934553 9fb2:A (1.14) BS01 A1IBO N/A GO:0004348 ... P04062 38932616
    934554 9fb4:A (3.13) BS01 dna N/A N/A P03070 N/A
    934555 9fb4:A (3.13) BS02 ATP N/A N/A P03070 N/A
    934556 9fb4:B (3.13) BS01 dna N/A N/A P03070 N/A
    934557 9fb4:B (3.13) BS02 ATP N/A N/A P03070 N/A
    934558 9fb4:B (3.13) BS03 ATP N/A N/A P03070 N/A
    934559 9fb4:C (3.13) BS01 dna N/A N/A P03070 N/A
    934560 9fb4:C (3.13) BS02 ATP N/A N/A P03070 N/A
    934561 9fb4:C (3.13) BS03 ATP N/A N/A P03070 N/A
    934562 9fb4:D (3.13) BS01 dna N/A N/A P03070 N/A
    934563 9fb4:D (3.13) BS02 ATP N/A N/A P03070 N/A
    934564 9fb4:E (3.13) BS01 dna N/A N/A P03070 N/A
    934565 9fb4:E (3.13) BS02 ATP N/A N/A P03070 N/A
    934566 9fb4:F (3.13) BS01 ATP N/A N/A P03070 N/A
    934567 9fb5:A (3.0) BS01 dna N/A N/A P03070 N/A
    934568 9fb5:A (3.0) BS02 ATP N/A N/A P03070 N/A
    934569 9fb5:B (3.0) BS01 dna N/A N/A P03070 N/A
    934570 9fb5:B (3.0) BS02 ATP N/A N/A P03070 N/A
    934571 9fb5:C (3.0) BS01 dna N/A N/A P03070 N/A
    934572 9fb5:C (3.0) BS02 ATP N/A N/A P03070 N/A
    934573 9fb5:D (3.0) BS01 dna N/A N/A P03070 N/A
    934574 9fb5:D (3.0) BS02 ATP N/A N/A P03070 N/A
    934575 9fb5:E (3.0) BS01 dna N/A N/A P03070 N/A
    934576 9fb5:E (3.0) BS02 ATP N/A N/A P03070 N/A
    934577 9fb5:F (3.0) BS01 dna N/A N/A P03070 N/A
    934578 9fb5:F (3.0) BS02 ATP N/A N/A P03070 N/A
    934579 9fb6:A (3.13) BS01 dna N/A N/A P03070 N/A
    934580 9fb6:A (3.13) BS02 ATP N/A N/A P03070 N/A
    934581 9fb6:B (3.13) BS01 dna N/A N/A P03070 N/A
    934582 9fb6:B (3.13) BS02 ATP N/A N/A P03070 N/A
    934583 9fb6:B (3.13) BS03 ATP N/A N/A P03070 N/A
    934584 9fb6:C (3.13) BS01 dna N/A N/A P03070 N/A
    934585 9fb6:C (3.13) BS02 ATP N/A N/A P03070 N/A
    934586 9fb6:C (3.13) BS03 ATP N/A N/A P03070 N/A
    934587 9fb6:D (3.13) BS01 dna N/A N/A P03070 N/A
    934588 9fb6:D (3.13) BS02 ATP N/A N/A P03070 N/A
    934589 9fb6:E (3.13) BS01 dna N/A N/A P03070 N/A
    934590 9fb6:E (3.13) BS02 ATP N/A N/A P03070 N/A
    934591 9fb6:F (3.13) BS01 ATP N/A N/A P03070 N/A
    934592 9fb8:A (1.727) BS01 ANP N/A GO:0000723 ... Q9H611 39417423
    934593 9fb8:A (1.727) BS02 O0J N/A GO:0000723 ... Q9H611 39417423
    934594 9fb8:A (1.727) BS03 O0J N/A GO:0000723 ... Q9H611 39417423
    934595 9fbf:A (3.01) BS01 peptide N/A GO:0003677 ... Q9PTN2 38858308
    934596 9fbf:A (3.01) BS02 A1IBM N/A GO:0003677 ... Q9PTN2 38858308
    934597 9fbk:A (1.7) BS01 CA N/A N/A Q1PZE6 39675707
    934598 9fbk:A (1.7) BS02 CA N/A N/A Q1PZE6 39675707
    934599 9fbk:A (1.7) BS03 CA N/A N/A Q1PZE6 39675707
    934600 9fbk:A (1.7) BS04 HEC N/A N/A Q1PZE6 39675707

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).