SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    934801 9fd6:D (1.43) BS01 NAI N/A N/A A0A1B1V585 39725031
    934802 9fd6:D (1.43) BS02 FAD N/A N/A A0A1B1V585 39725031
    934803 9fd6:D (1.43) BS03 NAI N/A N/A A0A1B1V585 39725031
    934804 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934805 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934806 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934807 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934808 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934809 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934810 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934811 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    934812 9fdi:A (1.41) BS01 A1IB1 N/A GO:0004348 ... P04062 38932616
    934813 9fdi:A (1.41) BS02 A1IB1 N/A GO:0004348 ... P04062 38932616
    934814 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    934815 9fdj:B (1.7) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934816 9fdj:B (1.7) BS02 FMN N/A GO:0008137 ... O66841 38960077
    934817 9fdj:B (1.7) BS03 NAI N/A GO:0008137 ... O66841 38960077
    934818 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    934819 9fdj:D (1.7) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934820 9fdj:D (1.7) BS02 FMN N/A GO:0008137 ... O66841 38960077
    934821 9fdj:D (1.7) BS03 NAI N/A GO:0008137 ... O66841 38960077
    934822 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    934823 9fdk:B (1.8) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934824 9fdk:B (1.8) BS02 FMN N/A GO:0008137 ... O66841 38960077
    934825 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    934826 9fdk:D (1.8) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934827 9fdk:D (1.8) BS02 FMN N/A GO:0008137 ... O66841 38960077
    934828 9fdl:A (2.33) BS01 CU N/A N/A G2Q9F7 39662565
    934829 9fdl:B (2.33) BS01 CU N/A N/A G2Q9F7 39662565
    934830 9fdl:C (2.33) BS01 CU N/A N/A G2Q9F7 39662565
    934831 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    934832 9fdv:B (1.986) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934833 9fdv:B (1.986) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934834 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    934835 9fdv:D (1.986) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934836 9fdv:D (1.986) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934837 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    934838 9fe0:B (2.2) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934839 9fe0:B (2.2) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934840 9fe0:B (2.2) BS03 NAD N/A GO:0008137 ... O66841 38960077
    934841 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    934842 9fe0:D (2.2) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934843 9fe0:D (2.2) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934844 9fe0:D (2.2) BS03 NAD N/A GO:0008137 ... O66841 38960077
    934845 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    934846 9fe5:B (2.1) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934847 9fe5:B (2.1) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934848 9fe5:B (2.1) BS03 NAI N/A GO:0008137 ... O66841 38960077
    934849 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    934850 9fe5:D (2.1) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934851 9fe5:D (2.1) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934852 9fe5:D (2.1) BS03 NAI N/A GO:0008137 ... O66841 38960077
    934853 9fe6:B (1.875) BS01 peptide N/A GO:0000166 ... A0A7C5VFX3 N/A
    934854 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    934855 9fe7:B (2.28) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934856 9fe7:B (2.28) BS02 FMN N/A GO:0008137 ... O66841 38960077
    934857 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    934858 9fe7:D (2.28) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934859 9fe7:D (2.28) BS02 FMN N/A GO:0008137 ... O66841 38960077
    934860 9fe8:A (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    934861 9fe8:B (2.34) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934862 9fe8:B (2.34) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934863 9fe8:C (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    934864 9fe8:D (2.34) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934865 9fe8:D (2.34) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934866 9fea:A (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    934867 9fea:B (1.66) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934868 9fea:B (1.66) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934869 9fea:B (1.66) BS03 NAD N/A GO:0008137 ... O66841 38960077
    934870 9fea:C (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    934871 9fea:D (1.66) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    934872 9fea:D (1.66) BS02 FNR N/A GO:0008137 ... O66841 38960077
    934873 9fea:D (1.66) BS03 NAD N/A GO:0008137 ... O66841 38960077
    934874 9feb:A (1.698) BS01 NAP N/A GO:0000166 ... A0A7C5VFX3 N/A
    934875 9feb:B (1.698) BS01 NAP N/A GO:0000166 ... A0A7C5VFX3 N/A
    934876 9feb:C (1.698) BS01 NAP N/A GO:0000166 ... A0A7C5VFX3 N/A
    934877 9feb:D (1.698) BS01 peptide N/A GO:0000166 ... A0A7C5VFX3 N/A
    934878 9feb:D (1.698) BS02 NAP N/A GO:0000166 ... A0A7C5VFX3 N/A
    934879 9feh:A (1.99) BS01 A1IB6 N/A GO:0004482 ... P0DTD1
    P41212
    39188530
    934880 9feh:A (1.99) BS02 ZN N/A GO:0004482 ... P0DTD1
    P41212
    39188530
    934881 9fej:A (3.0) BS01 CA N/A GO:0001172 ... Q9MC15 39384884
    934882 9fek:A (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934883 9fek:B (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934884 9fek:C (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934885 9fek:D (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934886 9fek:E (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934887 9fek:F (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934888 9fek:G (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934889 9fek:H (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934890 9fek:I (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934891 9fek:J (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934892 9fek:K (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934893 9fek:L (1.58) BS01 MN N/A GO:0008783 ... A0A0S4KUT0 39143220
    934894 9fet:A (2.4) BS01 REB N/A GO:0004672 ... Q86Y07 N/A
    934895 9ffb:B (3.59) BS01 dna N/A GO:0005515 ... B0I564 39085614
    934896 9ffb:B (3.59) BS02 dna N/A GO:0005515 ... B0I564 39085614
    934897 9ffd:A (1.75) BS01 NAP N/A GO:0001523 ... P42330 39140045
    934898 9ffd:A (1.75) BS02 A1ICG N/A GO:0001523 ... P42330 39140045
    934899 9ffd:B (1.75) BS01 NAP N/A GO:0001523 ... P42330 39140045
    934900 9ffd:B (1.75) BS02 A1ICG N/A GO:0001523 ... P42330 39140045
    934901 9fff:B (3.68) BS01 dna N/A GO:0005515 ... B0I564 39085614
    934902 9ffj:A (1.27) BS01 A1ICD N/A N/A P22629 39760306
    934903 9ffk:A (1.7) BS01 FAD N/A N/A A0A3N9RU39 39781101
    934904 9ffk:A (1.7) BS02 V55 N/A N/A A0A3N9RU39 39781101
    934905 9ffk:B (1.7) BS01 FAD N/A N/A A0A3N9RU39 39781101
    934906 9ffk:B (1.7) BS02 V55 N/A N/A A0A3N9RU39 39781101
    934907 9fge:A (1.6) BS01 FAD N/A N/A A0A3N9RU39 39781101
    934908 9fge:A (1.6) BS02 V55 N/A N/A A0A3N9RU39 39781101
    934909 9fge:B (1.6) BS01 FAD N/A N/A A0A3N9RU39 39781101
    934910 9fge:B (1.6) BS02 V55 N/A N/A A0A3N9RU39 39781101
    934911 9fgn:A (2.64) BS01 A1ICH N/A N/A P21404 39292620
    934912 9fgo:A (1.43) BS01 ZN N/A GO:0006508 ... E5L2F2 N/A
    934913 9fgp:A (1.49) BS01 ZN ? N/A Q6V702 N/A
    934914 9fgp:B (1.49) BS01 ZN ? N/A Q6V702 N/A
    934915 9fgq:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    934916 9fgq:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    934917 9fgq:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    934918 9fgq:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    934919 9fgq:C (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    934920 9fgq:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    934921 9fgq:C (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    934922 9fgq:D (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    934923 9fgq:D (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    934924 9fgq:D (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    934925 9fgq:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    934926 9fgq:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    934927 9fgq:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    934928 9fgq:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    934929 9fgq:G (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    934930 9fgq:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    934931 9fgq:G (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    934932 9fgq:H (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    934933 9fgq:H (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    934934 9fgq:H (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    934935 9fh7:A (1.529) BS01 FMN N/A N/A Q03558 39444529
    934936 9fh7:B (1.529) BS01 FMN N/A N/A Q03558 39444529
    934937 9fh9:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    934938 9fh9:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    934939 9fh9:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    934940 9fh9:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    934941 9fh9:C (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    934942 9fh9:C (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    934943 9fh9:C (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    934944 9fh9:D (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    934945 9fh9:D (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    934946 9fh9:D (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    934947 9fh9:E (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    934948 9fh9:E (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    934949 9fh9:F (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    934950 9fh9:F (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    934951 9fh9:G (2.5) BS01 peptide N/A GO:0000786 ... Q7L7L0 39143240
    934952 9fh9:G (2.5) BS02 dna N/A GO:0000786 ... Q7L7L0 39143240
    934953 9fh9:G (2.5) BS03 dna N/A GO:0000786 ... Q7L7L0 39143240
    934954 9fh9:H (2.5) BS01 peptide N/A GO:0000786 ... P02281 39143240
    934955 9fh9:H (2.5) BS02 dna N/A GO:0000786 ... P02281 39143240
    934956 9fh9:H (2.5) BS03 dna N/A GO:0000786 ... P02281 39143240
    934957 9fhb:A (3.87) BS01 HEM N/A GO:0004601 ... P69905 39738064
    934958 9fhb:B (3.87) BS01 HEM N/A GO:0004601 ... P68871 39738064
    934959 9fhb:D (3.87) BS01 CA N/A N/A Q86VB7 39738064
    934960 9fhb:D (3.87) BS02 CA N/A N/A Q86VB7 39738064
    934961 9fhd:A (1.845) BS01 A1ICK N/A GO:0004454 ... P50053 39179180
    934962 9fhd:B (1.845) BS01 A1ICK N/A GO:0004454 ... P50053 39179180
    934963 9fhe:A (2.313) BS01 A1ICK N/A GO:0004454 ... P50053 39179180
    934964 9fhe:B (2.313) BS01 A1ICK N/A GO:0004454 ... P50053 39179180
    934965 9fhl:3 (2.5) BS01 rna N/A N/A P55858 39753558
    934966 9fhl:A (2.5) BS01 rna N/A N/A Q9UXD4 39753558
    934967 9fhl:B (2.5) BS01 rna N/A N/A P95993 39753558
    934968 9fhl:C (2.5) BS01 rna N/A N/A Q980V0 39753558
    934969 9fhl:C (2.5) BS02 ZN N/A N/A Q980V0 39753558
    934970 9fhl:C (2.5) BS03 ZN N/A N/A Q980V0 39753558
    934971 9fhl:D (2.5) BS01 rna N/A N/A P95987 39753558
    934972 9fhl:E (2.5) BS01 rna N/A N/A Q9UX94 39753558
    934973 9fhl:F (2.5) BS01 rna N/A N/A Q9UX87 39753558
    934974 9fhl:F (2.5) BS02 ZN N/A N/A Q9UX87 39753558
    934975 9fhl:G (2.5) BS01 rna N/A N/A Q980A6 39753558
    934976 9fhl:H (2.5) BS01 rna N/A N/A P35026 39753558
    934977 9fhl:I (2.5) BS01 rna N/A N/A Q9UX92 39753558
    934978 9fhl:J (2.5) BS01 rna N/A N/A Q980W3 39753558
    934979 9fhl:K (2.5) BS01 rna N/A N/A P95992 39753558
    934980 9fhl:L (2.5) BS01 rna N/A N/A P35027 39753558
    934981 9fhl:M (2.5) BS01 rna N/A N/A P95988 39753558
    934982 9fhl:N (2.5) BS01 rna N/A N/A P39573 39753558
    934983 9fhl:O (2.5) BS01 rna N/A N/A P95986 39753558
    934984 9fhl:P (2.5) BS01 rna N/A N/A Q97ZQ5 39753558
    934985 9fhl:P (2.5) BS02 ZN N/A N/A Q97ZQ5 39753558
    934986 9fhl:Q (2.5) BS01 rna N/A N/A Q980A8 39753558
    934987 9fhl:R (2.5) BS01 rna N/A N/A Q9UX98 39753558
    934988 9fhl:R (2.5) BS02 ZN N/A N/A Q9UX98 39753558
    934989 9fhl:S (2.5) BS01 rna N/A N/A Q980K7 39753558
    934990 9fhl:T (2.5) BS01 rna N/A N/A Q9UXA3 39753558
    934991 9fhl:T (2.5) BS02 rna N/A N/A Q9UXA3 39753558
    934992 9fhl:U (2.5) BS01 rna N/A N/A Q980F7 39753558
    934993 9fhl:V (2.5) BS01 rna N/A N/A Q97ZY6 39753558
    934994 9fhl:W (2.5) BS01 rna N/A N/A Q97Z80 39753558
    934995 9fhl:W (2.5) BS02 ZN N/A N/A Q97Z80 39753558
    934996 9fhl:X (2.5) BS01 rna N/A N/A Q980Q5 39753558
    934997 9fhl:Y (2.5) BS01 rna N/A N/A Q97ZY7 39753558
    934998 9fhl:Z (2.5) BS01 rna N/A N/A Q9UXA0 39753558
    934999 9fhl:a (2.5) BS01 rna N/A N/A Q97ZK4 39753558
    935000 9fhl:a (2.5) BS02 ZN N/A N/A Q97ZK4 39753558

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).