SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    935001 9fhl:a (2.5) BS03 ZN N/A N/A Q97ZK4 39753558
    935002 9fhl:c (2.5) BS01 rna N/A N/A Q97ZZ6 39753558
    935003 9fhl:e (2.5) BS01 rna N/A N/A Q97ZH4 39753558
    935004 9fhq:A (1.696) BS01 A1ICP N/A N/A P0DTD1 39817813
    935005 9fhq:B (1.696) BS01 A1ICP N/A N/A P0DTD1 39817813
    935006 9fi8:HA (3.6) BS01 rna N/A GO:0003735 ... S8GCU6 39690155
    935007 9fi8:HA (3.6) BS02 rna N/A GO:0003735 ... S8GCU6 39690155
    935008 9fi8:HA (3.6) BS03 rna N/A GO:0003735 ... S8GCU6 39690155
    935009 9fi8:HB (3.6) BS01 rna N/A N/A S8F943 39690155
    935010 9fi8:HB (3.6) BS02 rna N/A N/A S8F943 39690155
    935011 9fi8:HC (3.6) BS01 rna N/A N/A S8F4G4 39690155
    935012 9fi8:HC (3.6) BS02 rna N/A N/A S8F4G4 39690155
    935013 9fi8:HC (3.6) BS03 rna N/A N/A S8F4G4 39690155
    935014 9fi8:HD (3.6) BS01 rna N/A GO:0005840 ... A0A125YWE1 39690155
    935015 9fi8:HD (3.6) BS02 rna N/A GO:0005840 ... A0A125YWE1 39690155
    935016 9fi8:HD (3.6) BS03 rna N/A GO:0005840 ... A0A125YWE1 39690155
    935017 9fi8:HD (3.6) BS04 rna N/A GO:0005840 ... A0A125YWE1 39690155
    935018 9fi8:HD (3.6) BS05 rna N/A GO:0005840 ... A0A125YWE1 39690155
    935019 9fi8:HE (3.6) BS01 peptide N/A N/A S8G684 39690155
    935020 9fi8:HE (3.6) BS02 rna N/A N/A S8G684 39690155
    935021 9fi8:HE (3.6) BS03 rna N/A N/A S8G684 39690155
    935022 9fi8:HE (3.6) BS04 rna N/A N/A S8G684 39690155
    935023 9fi8:HF (3.6) BS01 rna N/A N/A S8ETI9 39690155
    935024 9fi8:HF (3.6) BS02 rna N/A N/A S8ETI9 39690155
    935025 9fi8:HF (3.6) BS03 rna N/A N/A S8ETI9 39690155
    935026 9fi8:HF (3.6) BS04 rna N/A N/A S8ETI9 39690155
    935027 9fi8:HI (3.6) BS01 rna N/A N/A A0A125YQQ1 39690155
    935028 9fi8:HI (3.6) BS02 rna N/A N/A A0A125YQQ1 39690155
    935029 9fi8:HI (3.6) BS03 rna N/A N/A A0A125YQQ1 39690155
    935030 9fi8:HK (3.6) BS01 rna N/A N/A S8EW95 39690155
    935031 9fi8:HL (3.6) BS01 rna N/A N/A A0A125YYH5 39690155
    935032 9fi8:HL (3.6) BS02 rna N/A N/A A0A125YYH5 39690155
    935033 9fi8:HM (3.6) BS01 rna N/A N/A S8F0U0 39690155
    935034 9fi8:HO (3.6) BS01 rna N/A N/A S8GML4 39690155
    935035 9fi8:HO (3.6) BS02 rna N/A N/A S8GML4 39690155
    935036 9fi8:HO (3.6) BS03 rna N/A N/A S8GML4 39690155
    935037 9fi8:HP (3.6) BS01 rna N/A N/A S8F5W4 39690155
    935038 9fi8:HP (3.6) BS02 rna N/A N/A S8F5W4 39690155
    935039 9fi8:HP (3.6) BS03 rna N/A N/A S8F5W4 39690155
    935040 9fi8:HP (3.6) BS04 rna N/A N/A S8F5W4 39690155
    935041 9fi8:HP (3.6) BS05 rna N/A N/A S8F5W4 39690155
    935042 9fi8:HQ (3.6) BS01 rna N/A N/A S8G3J1 39690155
    935043 9fi8:HR (3.6) BS01 rna N/A N/A S8G8E7 39690155
    935044 9fi8:HR (3.6) BS02 rna N/A N/A S8G8E7 39690155
    935045 9fi8:HS (3.6) BS01 rna N/A N/A A0A125YXT1 39690155
    935046 9fi8:HT (3.6) BS01 rna N/A N/A A0A125YG13 39690155
    935047 9fi8:HT (3.6) BS02 rna N/A N/A A0A125YG13 39690155
    935048 9fi9:A (1.727) BS01 ANP N/A N/A Q9H611 39417423
    935049 9fi9:A (1.727) BS02 O0J N/A N/A Q9H611 39417423
    935050 9fia:B0 (3.29) BS01 rna N/A N/A S8GGX8 39690155
    935051 9fia:B2 (3.29) BS01 rna N/A GO:0003735 ... S8F879 39690155
    935052 9fia:B2 (3.29) BS02 rna N/A GO:0003735 ... S8F879 39690155
    935053 9fia:B2 (3.29) BS03 rna N/A GO:0003735 ... S8F879 39690155
    935054 9fia:B3 (3.29) BS01 rna N/A N/A S8G6C8 39690155
    935055 9fia:B4 (3.29) BS01 rna N/A N/A A0A125YXL8 39690155
    935056 9fia:B5 (3.29) BS01 rna N/A GO:0005840 ... S8F665 39690155
    935057 9fia:B5 (3.29) BS02 rna N/A GO:0005840 ... S8F665 39690155
    935058 9fia:B5 (3.29) BS03 rna N/A GO:0005840 ... S8F665 39690155
    935059 9fia:B5 (3.29) BS04 rna N/A GO:0005840 ... S8F665 39690155
    935060 9fia:B6 (3.29) BS01 rna N/A GO:0003735 ... A0A125YRD5 39690155
    935061 9fia:B6 (3.29) BS02 rna N/A GO:0003735 ... A0A125YRD5 39690155
    935062 9fia:B6 (3.29) BS03 rna N/A GO:0003735 ... A0A125YRD5 39690155
    935063 9fia:B9 (3.29) BS01 rna N/A N/A A0A125YYG6 39690155
    935064 9fia:B9 (3.29) BS02 rna N/A N/A A0A125YYG6 39690155
    935065 9fia:B9 (3.29) BS03 rna N/A N/A A0A125YYG6 39690155
    935066 9fia:BA (3.29) BS01 rna N/A N/A S8F8D3 39690155
    935067 9fia:BA (3.29) BS02 rna N/A N/A S8F8D3 39690155
    935068 9fia:BA (3.29) BS03 rna N/A N/A S8F8D3 39690155
    935069 9fia:BB (3.29) BS01 rna N/A N/A S8GUD6 39690155
    935070 9fia:BB (3.29) BS02 rna N/A N/A S8GUD6 39690155
    935071 9fia:BC (3.29) BS01 rna N/A N/A S8GBT4 39690155
    935072 9fia:BC (3.29) BS02 rna N/A N/A S8GBT4 39690155
    935073 9fia:BC (3.29) BS03 rna N/A N/A S8GBT4 39690155
    935074 9fia:BC (3.29) BS04 rna N/A N/A S8GBT4 39690155
    935075 9fia:BC (3.29) BS05 rna N/A N/A S8GBT4 39690155
    935076 9fia:BC (3.29) BS06 rna N/A N/A S8GBT4 39690155
    935077 9fia:BD (3.29) BS01 rna N/A N/A S8F073 39690155
    935078 9fia:BE (3.29) BS01 rna N/A N/A S8G6E6 39690155
    935079 9fia:BF (3.29) BS01 rna N/A N/A A0A125YYT2 39690155
    935080 9fia:BF (3.29) BS02 rna N/A N/A A0A125YYT2 39690155
    935081 9fia:BF (3.29) BS03 rna N/A N/A A0A125YYT2 39690155
    935082 9fia:BF (3.29) BS04 rna N/A N/A A0A125YYT2 39690155
    935083 9fia:BH (3.29) BS01 rna N/A GO:0005840 ... A0A125YNF6 39690155
    935084 9fia:BH (3.29) BS02 rna N/A GO:0005840 ... A0A125YNF6 39690155
    935085 9fia:BH (3.29) BS03 rna N/A GO:0005840 ... A0A125YNF6 39690155
    935086 9fia:BH (3.29) BS04 rna N/A GO:0005840 ... A0A125YNF6 39690155
    935087 9fia:BK (3.29) BS01 rna N/A N/A S8EVV8 39690155
    935088 9fia:BK (3.29) BS02 rna N/A N/A S8EVV8 39690155
    935089 9fia:BK (3.29) BS03 rna N/A N/A S8EVV8 39690155
    935090 9fia:BL (3.29) BS01 rna N/A GO:0003735 ... A0A125YU95 39690155
    935091 9fia:BL (3.29) BS02 rna N/A GO:0003735 ... A0A125YU95 39690155
    935092 9fia:BL (3.29) BS03 rna N/A GO:0003735 ... A0A125YU95 39690155
    935093 9fia:BO (3.29) BS01 rna N/A GO:0005737 ... A0A125YGX6 39690155
    935094 9fia:BO (3.29) BS02 rna N/A GO:0005737 ... A0A125YGX6 39690155
    935095 9fia:BO (3.29) BS03 rna N/A GO:0005737 ... A0A125YGX6 39690155
    935096 9fia:BO (3.29) BS04 rna N/A GO:0005737 ... A0A125YGX6 39690155
    935097 9fia:BO (3.29) BS05 rna N/A GO:0005737 ... A0A125YGX6 39690155
    935098 9fia:BQ (3.29) BS01 peptide N/A N/A S8GKJ3 39690155
    935099 9fia:BQ (3.29) BS02 rna N/A N/A S8GKJ3 39690155
    935100 9fia:BQ (3.29) BS03 rna N/A N/A S8GKJ3 39690155
    935101 9fia:BQ (3.29) BS04 rna N/A N/A S8GKJ3 39690155
    935102 9fia:BQ (3.29) BS05 rna N/A N/A S8GKJ3 39690155
    935103 9fia:BQ (3.29) BS06 rna N/A N/A S8GKJ3 39690155
    935104 9fia:BQ (3.29) BS07 rna N/A N/A S8GKJ3 39690155
    935105 9fia:BQ (3.29) BS08 rna N/A N/A S8GKJ3 39690155
    935106 9fia:BS (3.29) BS01 rna N/A N/A S8G0I7 39690155
    935107 9fia:BT (3.29) BS01 rna N/A N/A A0A0F7VBJ0 39690155
    935108 9fia:BT (3.29) BS02 rna N/A N/A A0A0F7VBJ0 39690155
    935109 9fia:BV (3.29) BS01 rna N/A GO:0003677 ... S8F351 39690155
    935110 9fia:BV (3.29) BS02 rna N/A GO:0003677 ... S8F351 39690155
    935111 9fia:BV (3.29) BS03 rna N/A GO:0003677 ... S8F351 39690155
    935112 9fia:BW (3.29) BS01 rna N/A N/A S8F063 39690155
    935113 9fia:BW (3.29) BS02 rna N/A N/A S8F063 39690155
    935114 9fia:Bc (3.29) BS01 peptide N/A GO:0005739 ... A0A125YR83 39690155
    935115 9fia:Bg (3.29) BS01 rna N/A N/A S8ETC4 39690155
    935116 9fia:Bg (3.29) BS02 rna N/A N/A S8ETC4 39690155
    935117 9fia:Bh (3.29) BS01 rna N/A GO:0003735 ... A0A125YN27 39690155
    935118 9fia:Bh (3.29) BS02 rna N/A GO:0003735 ... A0A125YN27 39690155
    935119 9fia:Bh (3.29) BS03 rna N/A GO:0003735 ... A0A125YN27 39690155
    935120 9fia:Bi (3.29) BS01 rna N/A N/A S8GJU2 39690155
    935121 9fia:Bk (3.29) BS01 rna N/A N/A S8G5S9 39690155
    935122 9fia:Bk (3.29) BS02 rna N/A N/A S8G5S9 39690155
    935123 9fia:Bk (3.29) BS03 rna N/A N/A S8G5S9 39690155
    935124 9fia:Bk (3.29) BS04 rna N/A N/A S8G5S9 39690155
    935125 9fia:Bk (3.29) BS05 rna N/A N/A S8G5S9 39690155
    935126 9fia:Bl (3.29) BS01 peptide N/A GO:0005840 ... S8EUD1 39690155
    935127 9fia:Bl (3.29) BS02 rna N/A GO:0005840 ... S8EUD1 39690155
    935128 9fia:Bl (3.29) BS03 rna N/A GO:0005840 ... S8EUD1 39690155
    935129 9fia:Bl (3.29) BS04 rna N/A GO:0005840 ... S8EUD1 39690155
    935130 9fia:Bl (3.29) BS05 rna N/A GO:0005840 ... S8EUD1 39690155
    935131 9fia:Bl (3.29) BS06 rna N/A GO:0005840 ... S8EUD1 39690155
    935132 9fia:Bl (3.29) BS07 rna N/A GO:0005840 ... S8EUD1 39690155
    935133 9fia:Bl (3.29) BS08 rna N/A GO:0005840 ... S8EUD1 39690155
    935134 9fia:HJ (3.29) BS01 rna N/A GO:0003723 ... S8F5G8 39690155
    935135 9fia:HJ (3.29) BS02 rna N/A GO:0003723 ... S8F5G8 39690155
    935136 9fia:HJ (3.29) BS03 rna N/A GO:0003723 ... S8F5G8 39690155
    935137 9fia:HJ (3.29) BS04 rna N/A GO:0003723 ... S8F5G8 39690155
    935138 9fia:HJ (3.29) BS05 rna N/A GO:0003723 ... S8F5G8 39690155
    935139 9fia:HJ (3.29) BS06 rna N/A GO:0003723 ... S8F5G8 39690155
    935140 9fia:HJ (3.29) BS07 rna N/A GO:0003723 ... S8F5G8 39690155
    935141 9fia:HS (3.29) BS01 rna N/A N/A A0A125YXT1 39690155
    935142 9fia:HS (3.29) BS02 rna N/A N/A A0A125YXT1 39690155
    935143 9fia:HS (3.29) BS03 rna N/A N/A A0A125YXT1 39690155
    935144 9fif:A (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    935145 9fif:B (1.77) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935146 9fif:B (1.77) BS02 FMN N/A GO:0008137 ... O66841 38960077
    935147 9fif:B (1.77) BS03 NAI N/A GO:0008137 ... O66841 38960077
    935148 9fif:C (1.77) BS01 FES N/A GO:0003954 ... O66842 38960077
    935149 9fif:D (1.77) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935150 9fif:D (1.77) BS02 FMN N/A GO:0008137 ... O66841 38960077
    935151 9fih:A (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    935152 9fih:B (2.08) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935153 9fih:B (2.08) BS02 FNR N/A GO:0008137 ... O66841 38960077
    935154 9fih:B (2.08) BS03 NAI N/A GO:0008137 ... O66841 38960077
    935155 9fih:C (2.08) BS01 FES N/A GO:0003954 ... O66842 38960077
    935156 9fih:D (2.08) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935157 9fih:D (2.08) BS02 FNR N/A GO:0008137 ... O66841 38960077
    935158 9fih:D (2.08) BS03 NAI N/A GO:0008137 ... O66841 38960077
    935159 9fii:A (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    935160 9fii:B (2.5) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935161 9fii:B (2.5) BS02 FMN N/A GO:0008137 ... O66841 38960077
    935162 9fii:C (2.5) BS01 FES N/A GO:0003954 ... O66842 38960077
    935163 9fii:D (2.5) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935164 9fii:D (2.5) BS02 FMN N/A GO:0008137 ... O66841 38960077
    935165 9fij:A (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    935166 9fij:B (2.35) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935167 9fij:B (2.35) BS02 FNR N/A GO:0008137 ... O66841 38960077
    935168 9fij:C (2.35) BS01 FES N/A GO:0003954 ... O66842 38960077
    935169 9fij:D (2.35) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935170 9fij:D (2.35) BS02 FNR N/A GO:0008137 ... O66841 38960077
    935171 9fil:A (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    935172 9fil:B (2.54) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935173 9fil:B (2.54) BS02 FNR N/A GO:0008137 ... O66841 38960077
    935174 9fil:B (2.54) BS03 NAD N/A GO:0008137 ... O66841 38960077
    935175 9fil:C (2.54) BS01 FES N/A GO:0003954 ... O66842 38960077
    935176 9fil:D (2.54) BS01 SF4 N/A GO:0008137 ... O66841 38960077
    935177 9fil:D (2.54) BS02 FNR N/A GO:0008137 ... O66841 38960077
    935178 9fil:D (2.54) BS03 NAD N/A GO:0008137 ... O66841 38960077
    935179 9fio:A (2.6) BS01 R4D N/A N/A Q93009 39441669
    935180 9fio:B (2.6) BS01 R4D N/A N/A Q93009 39441669
    935181 9fip:A (3.06) BS01 A1ICU N/A N/A Q93009 39441669
    935182 9fip:B (3.06) BS01 A1ICU N/A N/A Q93009 39441669
    935183 9fiq:A (2.86) BS01 A1ICV N/A N/A Q93009 39441669
    935184 9fiq:A (2.86) BS02 A1ICV N/A N/A Q93009 39441669
    935185 9fiq:B (2.86) BS01 A1ICV N/A N/A Q93009 39441669
    935186 9fiq:B (2.86) BS02 A1ICV N/A N/A Q93009 39441669
    935187 9fir:A (2.76) BS01 A1ICS N/A N/A Q93009 39441669
    935188 9fir:B (2.76) BS01 A1ICS N/A N/A Q93009 39441669
    935189 9fis:A (2.77) BS01 A1ICW N/A N/A Q93009 39441669
    935190 9fis:B (2.77) BS01 A1ICW N/A N/A Q93009 39441669
    935191 9fit:A (2.7) BS01 A1ICT N/A N/A Q93009 39441669
    935192 9fit:B (2.7) BS01 A1ICT N/A N/A Q93009 39441669
    935193 9fiu:A (3.37) BS01 A1ICX N/A N/A Q93009 39441669
    935194 9fiu:B (3.37) BS01 A1ICX N/A N/A Q93009 39441669
    935195 9fiv:A (2.7) BS01 A1ICO N/A N/A Q93009 39441669
    935196 9fiv:B (2.7) BS01 A1ICO N/A N/A Q93009 39441669
    935197 9fj3:A (1.4) BS01 peptide N/A N/A P0CG48 39268210
    935198 9fj3:D (1.4) BS01 peptide N/A N/A P0CG48 39268210
    935199 9fj4:A (1.54) BS01 peptide N/A N/A P0CG48 39268210
    935200 9fjc:1 (2.15) BS01 peptide N/A GO:0005198 ... A0A7T7KAA0 38978565

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).