SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    935601 8zp8:N4 (2.97) BS01 PLX N/A GO:0008137 ... Q7IIB7 N/A
    935602 8zp8:N4 (2.97) BS02 PLX N/A GO:0008137 ... Q7IIB7 N/A
    935603 8zp8:N6 (2.97) BS01 PLX N/A GO:0005739 ... O79882 N/A
    935604 8zp8:QC (2.97) BS01 PLX N/A GO:0005739 ... Q1HBG9 N/A
    935605 8zp8:QC (2.97) BS02 HEM N/A GO:0005739 ... Q1HBG9 N/A
    935606 8zp8:QC (2.97) BS03 HEM N/A GO:0005739 ... Q1HBG9 N/A
    935607 8zp8:QD (2.97) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 N/A
    935608 8zp8:QE (2.97) BS01 PLX N/A GO:0005743 ... A0A4X1TWD8 N/A
    935609 8zp8:QE (2.97) BS02 FES N/A GO:0005743 ... A0A4X1TWD8 N/A
    935610 8zp8:QI (2.97) BS01 PLX N/A GO:0005739 ... Q2EN79 N/A
    935611 8zp8:Qc (2.97) BS01 PLX N/A GO:0005739 ... Q1HBG9 N/A
    935612 8zp8:Qc (2.97) BS02 HEM N/A GO:0005739 ... Q1HBG9 N/A
    935613 8zp8:Qc (2.97) BS03 HEM N/A GO:0005739 ... Q1HBG9 N/A
    935614 8zp8:Qd (2.97) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 N/A
    935615 8zp8:Qe (2.97) BS01 PLX N/A GO:0005743 ... A0A4X1TWD8 N/A
    935616 8zp8:Qe (2.97) BS02 FES N/A GO:0005743 ... A0A4X1TWD8 N/A
    935617 8zp8:Qi (2.97) BS01 PLX N/A GO:0005739 ... Q2EN79 N/A
    935618 8zp8:S1 (2.97) BS01 SF4 N/A GO:0005743 ... A0A4X1V1H9 N/A
    935619 8zp8:S1 (2.97) BS02 SF4 N/A GO:0005743 ... A0A4X1V1H9 N/A
    935620 8zp8:S1 (2.97) BS03 FES N/A GO:0005743 ... A0A4X1V1H9 N/A
    935621 8zp8:S1 (2.97) BS04 MG N/A GO:0005743 ... A0A4X1V1H9 N/A
    935622 8zp8:S2 (2.97) BS01 SF4 N/A GO:0005743 ... A0A480JYS1 N/A
    935623 8zp8:S6 (2.97) BS01 ZN N/A N/A F1S031 N/A
    935624 8zp8:S7 (2.97) BS01 PLX N/A N/A A0A8D1TL60 N/A
    935625 8zp8:S7 (2.97) BS02 SF4 N/A N/A A0A8D1TL60 N/A
    935626 8zp8:S8 (2.97) BS01 SF4 N/A N/A A0A287BDC0 N/A
    935627 8zp8:S8 (2.97) BS02 SF4 N/A N/A A0A287BDC0 N/A
    935628 8zp8:V1 (2.97) BS01 SF4 N/A GO:0005743 ... A0A4X1SZP7 N/A
    935629 8zp8:V1 (2.97) BS02 FMN N/A GO:0005743 ... A0A4X1SZP7 N/A
    935630 8zp8:V2 (2.97) BS01 FES N/A N/A A0A287BG40 N/A
    935631 8zp9:B (2.8) BS01 rna N/A GO:0003723 ... A0ACD6BA35 39904990
    935632 8zp9:B (2.8) BS02 dna N/A GO:0003723 ... A0ACD6BA35 39904990
    935633 8zp9:F (2.8) BS01 rna N/A N/A A0ACD6BA34 39904990
    935634 8zp9:F (2.8) BS02 dna N/A N/A A0ACD6BA34 39904990
    935635 8zp9:G (2.8) BS01 rna N/A N/A A0ACD6BA34 39904990
    935636 8zp9:G (2.8) BS02 dna N/A N/A A0ACD6BA34 39904990
    935637 8zp9:H (2.8) BS01 rna N/A N/A A0ACD6BA34 39904990
    935638 8zp9:H (2.8) BS02 dna N/A N/A A0ACD6BA34 39904990
    935639 8zp9:I (2.8) BS01 rna N/A N/A A0ACD6BA34 39904990
    935640 8zp9:I (2.8) BS02 dna N/A N/A A0ACD6BA34 39904990
    935641 8zp9:J (2.8) BS01 rna N/A N/A A0ACD6BA34 39904990
    935642 8zp9:J (2.8) BS02 dna N/A N/A A0ACD6BA34 39904990
    935643 8zp9:K (2.8) BS01 rna N/A N/A A0ACD6BA34 39904990
    935644 8zp9:K (2.8) BS02 dna N/A N/A A0ACD6BA34 39904990
    935645 8zpa:A (2.59) BS01 UI8 N/A GO:0003677 ... P02768 39226652
    935646 8zpb:A (2.6) BS01 LNR N/A GO:0003779 ... P23975 39223283
    935647 8zpf:A (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935648 8zpf:B (2.3) BS01 ALA N/A GO:0003824 ... P94494 39733140
    935649 8zpf:B (2.3) BS02 PLP N/A GO:0003824 ... P94494 39733140
    935650 8zpf:C (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935651 8zpf:D (2.3) BS01 ALA N/A GO:0003824 ... P94494 39733140
    935652 8zpf:D (2.3) BS02 PLP N/A GO:0003824 ... P94494 39733140
    935653 8zpg:A (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935654 8zpg:A (2.3) BS02 ALA N/A GO:0003824 ... P94494 39733140
    935655 8zpg:B (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935656 8zpg:C (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935657 8zpg:C (2.3) BS02 ALA N/A GO:0003824 ... P94494 39733140
    935658 8zpg:D (2.3) BS01 ALA N/A GO:0003824 ... P94494 39733140
    935659 8zpg:D (2.3) BS02 PLP N/A GO:0003824 ... P94494 39733140
    935660 8zph:A (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935661 8zph:B (2.3) BS01 ALA N/A GO:0003824 ... P94494 39733140
    935662 8zph:B (2.3) BS02 PLP N/A GO:0003824 ... P94494 39733140
    935663 8zph:C (2.3) BS01 PLP N/A GO:0003824 ... P94494 39733140
    935664 8zph:C (2.3) BS02 ALA N/A GO:0003824 ... P94494 39733140
    935665 8zph:D (2.3) BS01 ALA N/A GO:0003824 ... P94494 39733140
    935666 8zph:D (2.3) BS02 PLP N/A GO:0003824 ... P94494 39733140
    935667 8zpi:A (3.12) BS01 PLP N/A GO:0004058 ... A0A150LFB8 N/A
    935668 8zpi:B (3.12) BS01 PLP N/A GO:0004058 ... A0A150LFB8 N/A
    935669 8zpk:A (3.21) BS01 dna N/A GO:0003682 ... P54784 40184174
    935670 8zpk:A (3.21) BS02 dna N/A GO:0003682 ... P54784 40184174
    935671 8zpk:A (3.21) BS03 AGS N/A GO:0003682 ... P54784 40184174
    935672 8zpk:B (3.21) BS01 dna N/A GO:0000781 ... P32833 40184174
    935673 8zpk:B (3.21) BS02 dna N/A GO:0000781 ... P32833 40184174
    935674 8zpk:C (3.21) BS01 dna N/A GO:0003677 ... P54790 40184174
    935675 8zpk:D (3.21) BS01 dna N/A GO:0000808 ... P54791 40184174
    935676 8zpk:D (3.21) BS02 AGS N/A GO:0000808 ... P54791 40184174
    935677 8zpk:E (3.21) BS01 dna N/A GO:0000808 ... P50874 40184174
    935678 8zpk:E (3.21) BS02 dna N/A GO:0000808 ... P50874 40184174
    935679 8zpk:E (3.21) BS03 AGS N/A GO:0000808 ... P50874 40184174
    935680 8zpl:R (3.01) BS01 CLR N/A GO:0004930 ... P61073 40063796
    935681 8zpl:R (3.01) BS02 A1D8K N/A GO:0004930 ... P61073 40063796
    935682 8zpm:R (3.2) BS01 A1D8L N/A GO:0004930 ... P61073 40063796
    935683 8zpn:R (3.31) BS01 CLR N/A GO:0004930 ... P61073 40063796
    935684 8zpn:R (3.31) BS02 VH6 N/A GO:0004930 ... P61073 40063796
    935685 8zpo:A (1.36) BS01 AMU N/A GO:0005524 ... Q97ML3 39304040
    935686 8zpo:B (1.36) BS01 AMU N/A GO:0005524 ... Q97ML3 39304040
    935687 8zpr:A (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935688 8zpr:B (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935689 8zpr:C (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935690 8zpr:D (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935691 8zpr:E (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935692 8zpr:F (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935693 8zpr:G (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935694 8zpr:H (2.76) BS01 PRO N/A GO:0000287 ... P0A7B5 N/A
    935695 8zps:R (2.97) BS01 peptide N/A GO:0004930 ... P49683 39223120
    935696 8zpt:R (2.96) BS01 peptide N/A GO:0004930 ... P49683 39223120
    935697 8zpu:A (2.8) BS01 peptide N/A N/A N/A 39542251
    935698 8zpu:B (2.8) BS01 peptide N/A N/A N/A 39542251
    935699 8zpv:A (2.9) BS01 ZN N/A GO:0000166 ... Q997F0 39661676
    935700 8zpv:A (2.9) BS02 ZN N/A GO:0000166 ... Q997F0 39661676
    935701 8zpz:B (3.5) BS01 BLD N/A GO:0005515 ... Q9ZR72 39497419
    935702 8zq1:A (2.2) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935703 8zq1:A (2.2) BS02 A1D8N N/A GO:0004114 ... Q08499 N/A
    935704 8zq1:B (2.2) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935705 8zq1:B (2.2) BS02 A1D8N N/A GO:0004114 ... Q08499 N/A
    935706 8zq2:A (2.10001) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935707 8zq2:A (2.10001) BS02 A1D8O N/A GO:0004114 ... Q08499 N/A
    935708 8zq2:B (2.10001) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935709 8zq2:B (2.10001) BS02 A1D8O N/A GO:0004114 ... Q08499 N/A
    935710 8zq3:A (2.43) BS01 GDP N/A GO:0000045 ... P51149 38897042
    935711 8zq4:B (3.8) BS01 ATP N/A GO:0005515 ... Q9ZR72 39497419
    935712 8zq4:B (3.8) BS02 ATP N/A GO:0005515 ... Q9ZR72 39497419
    935713 8zq4:B (3.8) BS03 BLD N/A GO:0005515 ... Q9ZR72 39497419
    935714 8zq8:A (1.77) BS01 A1D8T N/A GO:0008233 ... P0DTD1 N/A
    935715 8zq9:B (2.87) BS01 rna N/A GO:0003676 ... A0ACD6B9U6 40075056
    935716 8zq9:B (2.87) BS02 ZN N/A GO:0003676 ... A0ACD6B9U6 40075056
    935717 8zqb:A (3.65) BS01 rna N/A N/A N/A N/A
    935718 8zqc:A (3.4) BS01 rna N/A N/A N/A N/A
    935719 8zqc:A (3.4) BS02 dna N/A N/A N/A N/A
    935720 8zqc:A (3.4) BS03 dna N/A N/A N/A N/A
    935721 8zqd:A (2.21) BS01 ZN N/A GO:0005506 ... A0A1I9RYV3 39805018
    935722 8zqd:A (2.21) BS02 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935723 8zqd:A (2.21) BS03 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935724 8zqd:A (2.21) BS04 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935725 8zqd:A (2.21) BS05 402 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935726 8zqd:B (2.21) BS01 ZN N/A GO:0005506 ... A0A1I9RYV3 39805018
    935727 8zqd:B (2.21) BS02 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935728 8zqd:B (2.21) BS03 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935729 8zqd:B (2.21) BS04 SF4 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935730 8zqd:B (2.21) BS05 402 N/A GO:0005506 ... A0A1I9RYV3 39805018
    935731 8zqe:R (2.9) BS01 peptide N/A GO:0001525 ... P0ABE7
    P0AEX9
    P49685
    38918398
    935732 8zqh:A (3.12) BS01 rna N/A N/A N/A N/A
    935733 8zqh:A (3.12) BS02 dna N/A N/A N/A N/A
    935734 8zqh:A (3.12) BS03 dna N/A N/A N/A N/A
    935735 8zqi:A (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935736 8zqi:B (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935737 8zqi:C (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935738 8zqi:D (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935739 8zqi:E (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935740 8zqi:F (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935741 8zqi:G (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935742 8zqi:H (2.98) BS01 BGC N/A GO:0016936 ... A0A1L1QJZ7 N/A
    935743 8zqo:A (2.8) BS01 NA N/A GO:0005307 ... Q9GZV3 39657660
    935744 8zqo:A (2.8) BS02 NA N/A GO:0005307 ... Q9GZV3 39657660
    935745 8zqo:A (2.8) BS03 HC6 N/A GO:0005307 ... Q9GZV3 39657660
    935746 8zqo:A (2.8) BS04 CL N/A GO:0005307 ... Q9GZV3 39657660
    935747 8zqp:A (3.1) BS01 A1AOW N/A GO:0005307 ... Q9GZV3 39657660
    935748 8zqp:A (3.1) BS02 NA N/A GO:0005307 ... Q9GZV3 39657660
    935749 8zqq:A (2.5) BS01 CHT N/A GO:0005307 ... Q9GZV3 39657660
    935750 8zqq:A (2.5) BS02 NA N/A GO:0005307 ... Q9GZV3 39657660
    935751 8zqq:A (2.5) BS03 CL N/A GO:0005307 ... Q9GZV3 39657660
    935752 8zqs:A (3.4) BS01 rna N/A N/A N/A N/A
    935753 8zqs:A (3.4) BS02 dna N/A N/A N/A N/A
    935754 8zqu:A (2.00005) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935755 8zqu:A (2.00005) BS02 A1D8P N/A GO:0004114 ... Q08499 N/A
    935756 8zqu:B (2.00005) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935757 8zqu:B (2.00005) BS02 A1D8P N/A GO:0004114 ... Q08499 N/A
    935758 8zqw:A (2.10002) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935759 8zqw:A (2.10002) BS02 A1D8Q N/A GO:0004114 ... Q08499 N/A
    935760 8zqw:B (2.10002) BS01 ZN N/A GO:0004114 ... Q08499 N/A
    935761 8zqw:B (2.10002) BS02 A1D8Q N/A GO:0004114 ... Q08499 N/A
    935762 8zr0:A (2.9) BS01 ANP N/A GO:0005524 ... A0A8M3AT32 N/A
    935763 8zr4:D (1.9) BS01 BMA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935764 8zr4:D (1.9) BS02 MAN N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935765 8zr4:D (1.9) BS03 CA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935766 8zr4:H (1.9) BS01 BMA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935767 8zr4:H (1.9) BS02 MAN N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935768 8zr4:H (1.9) BS03 CA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935769 8zr4:K (1.9) BS01 BMA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935770 8zr4:K (1.9) BS02 MAN N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935771 8zr4:K (1.9) BS03 CA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935772 8zr4:N (1.9) BS01 BMA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935773 8zr4:N (1.9) BS02 MAN N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935774 8zr4:N (1.9) BS03 CA N/A GO:0004308 ... A0A2S0X6Y5 N/A
    935775 8zr5:C (3.31) BS01 A1D8M N/A GO:0004930 ... Q8TDV5 N/A
    935776 8zr9:A (2.7) BS01 4BW N/A N/A A0A505MGQ1 41022836
    935777 8zr9:A (2.7) BS02 4BW N/A N/A A0A505MGQ1 41022836
    935778 8zr9:B (2.7) BS01 4BW N/A N/A A0A505MGQ1 41022836
    935779 8zr9:B (2.7) BS02 4BW N/A N/A A0A505MGQ1 41022836
    935780 8zr9:B (2.7) BS03 4BW N/A N/A A0A505MGQ1 41022836
    935781 8zr9:C (2.7) BS01 4BW N/A N/A A0A505MGQ1 41022836
    935782 8zr9:C (2.7) BS02 4BW N/A N/A A0A505MGQ1 41022836
    935783 8zr9:C (2.7) BS03 4BW N/A N/A A0A505MGQ1 41022836
    935784 8zr9:D (2.7) BS01 4BW N/A N/A A0A505MGQ1 41022836
    935785 8zr9:D (2.7) BS02 4BW N/A N/A A0A505MGQ1 41022836
    935786 8zr9:D (2.7) BS03 4BW N/A N/A A0A505MGQ1 41022836
    935787 8zr9:E (2.7) BS01 4BW N/A N/A A0A505MGQ1 41022836
    935788 8zr9:E (2.7) BS02 4BW N/A N/A A0A505MGQ1 41022836
    935789 8zr9:E (2.7) BS03 4BW N/A N/A A0A505MGQ1 41022836
    935790 8zr9:F (2.7) BS01 4BW N/A N/A A0A505MGQ1 41022836
    935791 8zr9:F (2.7) BS02 4BW N/A N/A A0A505MGQ1 41022836
    935792 8zrk:R (2.82) BS01 A1D8Y N/A GO:0004930 ... Q8TDV5 N/A
    935793 8zrl:A (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    935794 8zrl:A (2.6) BS02 APR N/A GO:0004022 ... I3E949 40818608
    935795 8zrl:B (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    935796 8zrl:B (2.6) BS02 APR N/A GO:0004022 ... I3E949 40818608
    935797 8zrl:C (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    935798 8zrl:C (2.6) BS02 APR N/A GO:0004022 ... I3E949 40818608
    935799 8zrl:D (2.6) BS01 MN N/A GO:0004022 ... I3E949 40818608
    935800 8zrl:D (2.6) BS02 APR N/A GO:0004022 ... I3E949 40818608

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).