SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    936201 9ftz:W (2.6) BS03 9YF N/A N/A A0R562 39531492
    936202 9fu0:G (2.7) BS01 peptide N/A GO:0004497 ... A0R051 39531492
    936203 9fu0:G (2.7) BS02 9YF N/A GO:0004497 ... A0R051 39531492
    936204 9fu0:G (2.7) BS03 FES N/A GO:0004497 ... A0R051 39531492
    936205 9fu0:G (2.7) BS04 9YF N/A GO:0004497 ... A0R051 39531492
    936206 9fu0:G (2.7) BS05 IZL N/A GO:0004497 ... A0R051 39531492
    936207 9fu0:H (2.7) BS01 9YF N/A GO:0008121 ... A0R052 39531492
    936208 9fu0:H (2.7) BS02 HEM N/A GO:0008121 ... A0R052 39531492
    936209 9fu0:H (2.7) BS03 HEM N/A GO:0008121 ... A0R052 39531492
    936210 9fu0:H (2.7) BS04 MQ9 N/A GO:0008121 ... A0R052 39531492
    936211 9fu0:H (2.7) BS05 MQ9 N/A GO:0008121 ... A0R052 39531492
    936212 9fu0:H (2.7) BS06 9YF N/A GO:0008121 ... A0R052 39531492
    936213 9fu0:H (2.7) BS07 IZL N/A GO:0008121 ... A0R052 39531492
    936214 9fu0:M (2.7) BS01 peptide N/A GO:0004497 ... A0R051 39531492
    936215 9fu0:M (2.7) BS02 FES N/A GO:0004497 ... A0R051 39531492
    936216 9fu0:M (2.7) BS03 9YF N/A GO:0004497 ... A0R051 39531492
    936217 9fu0:M (2.7) BS04 IZL N/A GO:0004497 ... A0R051 39531492
    936218 9fu0:N (2.7) BS01 peptide N/A GO:0008121 ... A0R052 39531492
    936219 9fu0:N (2.7) BS02 MQ9 N/A GO:0008121 ... A0R052 39531492
    936220 9fu0:N (2.7) BS03 9YF N/A GO:0008121 ... A0R052 39531492
    936221 9fu0:N (2.7) BS04 IZL N/A GO:0008121 ... A0R052 39531492
    936222 9fu0:N (2.7) BS05 MQ9 N/A GO:0008121 ... A0R052 39531492
    936223 9fu0:N (2.7) BS06 HEM N/A GO:0008121 ... A0R052 39531492
    936224 9fu0:N (2.7) BS07 HEM N/A GO:0008121 ... A0R052 39531492
    936225 9fu0:N (2.7) BS08 MQ9 N/A GO:0008121 ... A0R052 39531492
    936226 9fu0:N (2.7) BS09 MQ9 N/A GO:0008121 ... A0R052 39531492
    936227 9fu0:N (2.7) BS10 9YF N/A GO:0008121 ... A0R052 39531492
    936228 9fu0:N (2.7) BS11 9YF N/A GO:0008121 ... A0R052 39531492
    936229 9fu0:O (2.7) BS01 WUO N/A N/A A0R050 39531492
    936230 9fu0:O (2.7) BS02 HEC N/A N/A A0R050 39531492
    936231 9fu0:O (2.7) BS03 HEC N/A N/A A0R050 39531492
    936232 9fu0:O (2.7) BS04 MQ9 N/A N/A A0R050 39531492
    936233 9fu0:O (2.7) BS05 MQ9 N/A N/A A0R050 39531492
    936234 9fu0:P (2.7) BS01 WUO N/A GO:0016020 ... A0QVH4 39531492
    936235 9fu0:P (2.7) BS02 9YF N/A GO:0016020 ... A0QVH4 39531492
    936236 9fu0:Q (2.7) BS01 CU N/A GO:0004129 ... A0R057 39531492
    936237 9fu0:Q (2.7) BS02 CU N/A GO:0004129 ... A0R057 39531492
    936238 9fu0:R (2.7) BS01 HEA N/A GO:0004129 ... A0R0M4 39531492
    936239 9fu0:R (2.7) BS02 HEA N/A GO:0004129 ... A0R0M4 39531492
    936240 9fu0:R (2.7) BS03 CU N/A GO:0004129 ... A0R0M4 39531492
    936241 9fu0:R (2.7) BS04 CA N/A GO:0004129 ... A0R0M4 39531492
    936242 9fu0:T (2.7) BS01 WUO N/A GO:0004129 ... A0R056 39531492
    936243 9fu0:T (2.7) BS02 MQ9 N/A GO:0004129 ... A0R056 39531492
    936244 9fu0:W (2.7) BS01 HEC N/A N/A A0R562 39531492
    936245 9fu0:W (2.7) BS02 9YF N/A N/A A0R562 39531492
    936246 9fu1:A (2.0) BS01 CA N/A N/A P06873 39775172
    936247 9fu1:A (2.0) BS02 CA N/A N/A P06873 39775172
    936248 9fug:A (1.71) BS01 A1IGD N/A N/A N/A 39814071
    936249 9fum:A (2.45) BS01 peptide N/A N/A P63104 39877981
    936250 9fum:B (2.45) BS01 peptide N/A N/A P63104 39877981
    936251 9fup:A (2.5) BS01 CLR N/A N/A P0ABE7
    P29274
    39775172
    936252 9fup:A (2.5) BS02 CLR N/A N/A P0ABE7
    P29274
    39775172
    936253 9fup:A (2.5) BS03 JQ9 N/A N/A P0ABE7
    P29274
    39775172
    936254 9fux:A (2.49) BS01 ZN N/A N/A Q997F0 39739115
    936255 9fux:A (2.49) BS02 ZN N/A N/A Q997F0 39739115
    936256 9fvd:A (3.2) BS01 rna N/A N/A P27588 39604358
    936257 9fvd:A (3.2) BS02 rna N/A N/A P27588 39604358
    936258 9fvd:A (3.2) BS03 rna N/A N/A P27588 39604358
    936259 9fvd:B (3.2) BS01 rna N/A N/A P27588 39604358
    936260 9fvd:B (3.2) BS02 rna N/A N/A P27588 39604358
    936261 9fvd:B (3.2) BS03 rna N/A N/A P27588 39604358
    936262 9fvd:B (3.2) BS04 rna N/A N/A P27588 39604358
    936263 9fvd:C (3.2) BS01 rna N/A N/A P27588 39604358
    936264 9fvd:C (3.2) BS02 rna N/A N/A P27588 39604358
    936265 9fvd:C (3.2) BS03 rna N/A N/A P27588 39604358
    936266 9fvd:C (3.2) BS04 rna N/A N/A P27588 39604358
    936267 9fve:A (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936268 9fve:C (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936269 9fve:E (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936270 9fve:G (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936271 9fve:I (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936272 9fve:K (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936273 9fve:M (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936274 9fve:O (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936275 9fve:Q (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936276 9fve:U (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936277 9fve:W (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936278 9fve:Y (2.81) BS01 SLB N/A N/A Q9KR64 39580575
    936279 9fvj:A (3.2) BS01 GDP N/A N/A Q0IIR4 39798564
    936280 9fvj:A (3.2) BS02 GTP N/A N/A Q0IIR4 39798564
    936281 9fvj:B (3.2) BS01 GDP N/A N/A Q0IIR4 39798564
    936282 9fvj:B (3.2) BS02 GTP N/A N/A Q0IIR4 39798564
    936283 9fvj:C (3.2) BS01 GDP N/A N/A Q0IIR4 39798564
    936284 9fvj:C (3.2) BS02 GTP N/A N/A Q0IIR4 39798564
    936285 9fvj:D (3.2) BS01 GDP N/A N/A Q0IIR4 39798564
    936286 9fvj:D (3.2) BS02 GTP N/A N/A Q0IIR4 39798564
    936287 9fvj:E (3.2) BS01 GDP N/A N/A Q0IIR4 39798564
    936288 9fvj:E (3.2) BS02 GTP N/A N/A Q0IIR4 39798564
    936289 9fvj:F (3.2) BS01 GDP N/A N/A Q0IIR4 39798564
    936290 9fvj:F (3.2) BS02 GTP N/A N/A Q0IIR4 39798564
    936291 9fvj:a (3.2) BS01 GTP N/A N/A N/A 39798564
    936292 9fvj:a (3.2) BS02 MG N/A N/A N/A 39798564
    936293 9fvj:b (3.2) BS01 GTP N/A N/A N/A 39798564
    936294 9fvj:b (3.2) BS02 MG N/A N/A N/A 39798564
    936295 9fvj:c (3.2) BS01 GTP N/A N/A N/A 39798564
    936296 9fvj:c (3.2) BS02 MG N/A N/A N/A 39798564
    936297 9fvj:d (3.2) BS01 GTP N/A N/A N/A 39798564
    936298 9fvj:d (3.2) BS02 MG N/A N/A N/A 39798564
    936299 9fvj:e (3.2) BS01 MG N/A N/A N/A 39798564
    936300 9fvj:e (3.2) BS02 GTP N/A N/A N/A 39798564
    936301 9fvj:f (3.2) BS01 GTP N/A N/A N/A 39798564
    936302 9fvj:f (3.2) BS02 MG N/A N/A N/A 39798564
    936303 9fvl:A (2.08) BS01 peptide N/A N/A P63104 39877981
    936304 9fvl:B (2.08) BS01 peptide N/A N/A P63104 39877981
    936305 9fvo:A (1.8) BS01 478 N/A GO:0004190 ... P11838 N/A
    936306 9fvs:A (1.4) BS01 COH N/A GO:0004392 ... P71119 39352411
    936307 9fvt:A (1.49) BS01 MG N/A N/A N/A N/A
    936308 9fvt:B (1.49) BS01 MG N/A N/A N/A N/A
    936309 9fvt:C (1.49) BS01 MG N/A N/A N/A N/A
    936310 9fvt:D (1.49) BS01 MG N/A N/A N/A N/A
    936311 9fw2:A (1.77) BS01 ZN N/A GO:0003723 ... P0DTD1 N/A
    936312 9fw2:A (1.77) BS02 ZN N/A GO:0003723 ... P0DTD1 N/A
    936313 9fw2:B (1.77) BS01 ZN N/A GO:0000175 ... P0DTD1 N/A
    936314 9fw2:B (1.77) BS02 ZN N/A GO:0000175 ... P0DTD1 N/A
    936315 9fw3:A (2.67) BS01 ATP N/A N/A G7CBF5 39880813
    936316 9fw3:A (2.67) BS02 MG N/A N/A G7CBF5 39880813
    936317 9fw3:A (2.67) BS03 ZN N/A N/A G7CBF5 39880813
    936318 9fw3:A (2.67) BS04 A1IRY N/A N/A G7CBF5 39880813
    936319 9fw3:A (2.67) BS05 ATP N/A N/A G7CBF5 39880813
    936320 9fw3:B (2.67) BS01 ATP N/A GO:0005524 ... G7CBF6 39880813
    936321 9fw3:B (2.67) BS02 MG N/A GO:0005524 ... G7CBF6 39880813
    936322 9fw3:B (2.67) BS03 ATP N/A GO:0005524 ... G7CBF6 39880813
    936323 9fw4:A (2.3) BS01 COH N/A GO:0004392 ... P71119 39352411
    936324 9fw4:B (2.3) BS01 COH N/A GO:0004392 ... P71119 39352411
    936325 9fwg:A (3.2) BS01 A1IG2 N/A GO:0000122 ... O60341 38619005
    936326 9fwx:A (1.25) BS01 A1IGX N/A N/A O60885 39069741
    936327 9fx1:A (1.76) BS01 peptide N/A N/A P07210 39639094
    936328 9fx1:C (1.76) BS01 peptide N/A N/A P07210 39639094
    936329 9fx6:B (2.227) BS01 MG N/A GO:0008233 ... P0DTD1 39052318
    936330 9fx7:A (2.282) BS01 MG N/A GO:0008233 ... P0DTD1 39052318
    936331 9fx7:B (2.282) BS01 MG N/A GO:0008233 ... P0DTD1 39052318
    936332 9fxc:A (3.6) BS01 AGS N/A GO:0005524 ... G7CBF5 39880813
    936333 9fxc:B (3.6) BS01 AGS N/A GO:0005524 ... G7CBF6 39880813
    936334 9fxe:A (2.12) BS01 A1IEC N/A GO:0004731 ... P0ABP8 39408755
    936335 9fxe:B (2.12) BS01 A1IEC N/A GO:0004731 ... P0ABP8 39408755
    936336 9fxe:C (2.12) BS01 A1IEC N/A GO:0004731 ... P0ABP8 39408755
    936337 9fxf:A (1.067) BS01 12H N/A N/A N/A 39422475
    936338 9fxh:A (2.3) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936339 9fxh:B (2.3) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936340 9fxh:C (2.3) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936341 9fxi:A (3.06) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936342 9fxi:A (3.06) BS02 S77 N/A GO:0005515 ... Q16769 39125848
    936343 9fxi:B (3.06) BS01 S77 N/A GO:0005515 ... Q16769 39125848
    936344 9fxi:B (3.06) BS02 CO N/A GO:0005515 ... Q16769 39125848
    936345 9fxi:C (3.06) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936346 9fxi:C (3.06) BS02 S77 N/A GO:0005515 ... Q16769 39125848
    936347 9fxj:A (3.06) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936348 9fxj:A (3.06) BS02 PBD N/A GO:0005515 ... Q16769 39125848
    936349 9fxj:B (3.06) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936350 9fxj:B (3.06) BS02 PBD N/A GO:0005515 ... Q16769 39125848
    936351 9fxj:C (3.06) BS01 CO N/A GO:0005515 ... Q16769 39125848
    936352 9fxj:C (3.06) BS02 PBD N/A GO:0005515 ... Q16769 39125848
    936353 9fxp:A (1.88) BS01 5WX N/A N/A O60885 39069741
    936354 9fxq:A (3.1) BS01 FAD N/A GO:0001735 ... A0A7N4P0D0 39322016
    936355 9fxt:H (2.3) BS01 SIA N/A N/A N/A 39886580
    936356 9fxt:I (2.3) BS01 SIA N/A N/A N/A 39886580
    936357 9fxt:L (2.3) BS01 SIA N/A N/A N/A 39886580
    936358 9fxt:M (2.3) BS01 SIA N/A N/A N/A 39886580
    936359 9fy0:3 (2.9) BS01 rna N/A N/A P55858 39753558
    936360 9fy0:A (2.9) BS01 rna N/A N/A Q9UXD4 39753558
    936361 9fy0:B (2.9) BS01 rna N/A N/A P95993 39753558
    936362 9fy0:C (2.9) BS01 rna N/A N/A Q980V0 39753558
    936363 9fy0:C (2.9) BS02 ZN N/A N/A Q980V0 39753558
    936364 9fy0:C (2.9) BS03 ZN N/A N/A Q980V0 39753558
    936365 9fy0:D (2.9) BS01 rna N/A N/A P95987 39753558
    936366 9fy0:E (2.9) BS01 rna N/A N/A Q9UX94 39753558
    936367 9fy0:F (2.9) BS01 rna N/A N/A Q9UX87 39753558
    936368 9fy0:F (2.9) BS02 ZN N/A N/A Q9UX87 39753558
    936369 9fy0:G (2.9) BS01 rna N/A N/A Q980A6 39753558
    936370 9fy0:H (2.9) BS01 rna N/A N/A P35026 39753558
    936371 9fy0:I (2.9) BS01 rna N/A N/A Q9UX92 39753558
    936372 9fy0:J (2.9) BS01 rna N/A N/A Q980W3 39753558
    936373 9fy0:K (2.9) BS01 rna N/A N/A P95992 39753558
    936374 9fy0:L (2.9) BS01 rna N/A N/A P35027 39753558
    936375 9fy0:M (2.9) BS01 rna N/A N/A P95988 39753558
    936376 9fy0:N (2.9) BS01 rna N/A N/A P39573 39753558
    936377 9fy0:O (2.9) BS01 rna N/A N/A P95986 39753558
    936378 9fy0:P (2.9) BS01 rna N/A N/A Q97ZQ5 39753558
    936379 9fy0:P (2.9) BS02 ZN N/A N/A Q97ZQ5 39753558
    936380 9fy0:Q (2.9) BS01 rna N/A N/A Q980A8 39753558
    936381 9fy0:R (2.9) BS01 rna N/A N/A Q9UX98 39753558
    936382 9fy0:R (2.9) BS02 ZN N/A N/A Q9UX98 39753558
    936383 9fy0:S (2.9) BS01 rna N/A N/A Q980K7 39753558
    936384 9fy0:T (2.9) BS01 rna N/A N/A Q9UXA3 39753558
    936385 9fy0:T (2.9) BS02 rna N/A N/A Q9UXA3 39753558
    936386 9fy0:U (2.9) BS01 rna N/A N/A Q980F7 39753558
    936387 9fy0:V (2.9) BS01 rna N/A N/A Q97ZY6 39753558
    936388 9fy0:W (2.9) BS01 rna N/A N/A Q97Z80 39753558
    936389 9fy0:W (2.9) BS02 ZN N/A N/A Q97Z80 39753558
    936390 9fy0:X (2.9) BS01 rna N/A N/A Q980Q5 39753558
    936391 9fy0:Y (2.9) BS01 rna N/A N/A Q97ZY7 39753558
    936392 9fy0:Z (2.9) BS01 rna N/A N/A Q9UXA0 39753558
    936393 9fy0:a (2.9) BS01 rna N/A N/A Q97ZK4 39753558
    936394 9fy0:a (2.9) BS02 ZN N/A N/A Q97ZK4 39753558
    936395 9fy0:a (2.9) BS03 ZN N/A N/A Q97ZK4 39753558
    936396 9fy0:b (2.9) BS01 rna N/A N/A Q97ZR1 39753558
    936397 9fy0:b (2.9) BS02 ZN N/A N/A Q97ZR1 39753558
    936398 9fy0:c (2.9) BS01 rna N/A N/A Q97ZZ6 39753558
    936399 9fy0:e (2.9) BS01 rna N/A N/A Q97ZH4 39753558
    936400 9fy4:A (2.839) BS01 COH N/A GO:0004392 ... P71119 39352411

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).