SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    937001 9g6k:Lr (2.89) BS03 rna N/A GO:0003735 ... A0A125YXA5 39690155
    937002 9g6k:Lr (2.89) BS04 rna N/A GO:0003735 ... A0A125YXA5 39690155
    937003 9g6k:Lr (2.89) BS05 rna N/A GO:0003735 ... A0A125YXA5 39690155
    937004 9g6k:Ls (2.89) BS01 rna N/A N/A S8GIU7 39690155
    937005 9g6k:Ls (2.89) BS02 rna N/A N/A S8GIU7 39690155
    937006 9g6k:Ls (2.89) BS03 rna N/A N/A S8GIU7 39690155
    937007 9g6k:Ls (2.89) BS04 rna N/A N/A S8GIU7 39690155
    937008 9g6k:Ls (2.89) BS05 rna N/A N/A S8GIU7 39690155
    937009 9g6k:Ls (2.89) BS06 rna N/A N/A S8GIU7 39690155
    937010 9g6k:Ls (2.89) BS07 rna N/A N/A S8GIU7 39690155
    937011 9g6k:Lt (2.89) BS01 rna N/A N/A S8F2D4 39690155
    937012 9g6k:Lu (2.89) BS01 rna N/A N/A A0A125YRP8 39690155
    937013 9g6k:Lv (2.89) BS01 rna N/A N/A A0A125YKH4 39690155
    937014 9g6k:Lw (2.89) BS01 rna N/A GO:0003735 ... A0A125YNI9 39690155
    937015 9g6k:Lw (2.89) BS02 rna N/A GO:0003735 ... A0A125YNI9 39690155
    937016 9g6k:Lw (2.89) BS03 rna N/A GO:0003735 ... A0A125YNI9 39690155
    937017 9g6k:Lx (2.89) BS01 rna N/A N/A S8G7B2 39690155
    937018 9g6k:Ly (2.89) BS01 rna N/A N/A S8F9B8 39690155
    937019 9g6k:Ly (2.89) BS02 rna N/A N/A S8F9B8 39690155
    937020 9g6k:Ly (2.89) BS03 rna N/A N/A S8F9B8 39690155
    937021 9g6k:Ly (2.89) BS04 rna N/A N/A S8F9B8 39690155
    937022 9g6k:Ly (2.89) BS05 rna N/A N/A S8F9B8 39690155
    937023 9g6k:Ly (2.89) BS06 rna N/A N/A S8F9B8 39690155
    937024 9g6k:Ly (2.89) BS07 rna N/A N/A S8F9B8 39690155
    937025 9g6k:Lz (2.89) BS01 rna N/A N/A A0A125YVN6 39690155
    937026 9g6k:Lz (2.89) BS02 rna N/A N/A A0A125YVN6 39690155
    937027 9g6k:Lz (2.89) BS03 rna N/A N/A A0A125YVN6 39690155
    937028 9g6k:UA (2.89) BS01 rna N/A N/A S8FAF6 39690155
    937029 9g6k:UA (2.89) BS02 rna N/A N/A S8FAF6 39690155
    937030 9g6k:UB (2.89) BS01 rna N/A N/A S8GME4 39690155
    937031 9g6k:UB (2.89) BS02 rna N/A N/A S8GME4 39690155
    937032 9g6k:UB (2.89) BS03 rna N/A N/A S8GME4 39690155
    937033 9g6k:UB (2.89) BS04 rna N/A N/A S8GME4 39690155
    937034 9g6k:UC (2.89) BS01 rna N/A N/A S8EXG3 39690155
    937035 9g6k:UC (2.89) BS02 rna N/A N/A S8EXG3 39690155
    937036 9g6k:UD (2.89) BS01 rna N/A N/A A0A125YKV7 39690155
    937037 9g6k:UD (2.89) BS02 rna N/A N/A A0A125YKV7 39690155
    937038 9g6k:UD (2.89) BS03 rna N/A N/A A0A125YKV7 39690155
    937039 9g6k:UD (2.89) BS04 rna N/A N/A A0A125YKV7 39690155
    937040 9g6k:UE (2.89) BS01 rna N/A N/A S8G1Y9 39690155
    937041 9g6k:UF (2.89) BS01 rna N/A N/A A0A125YQ85 39690155
    937042 9g6k:UF (2.89) BS02 rna N/A N/A A0A125YQ85 39690155
    937043 9g6k:UF (2.89) BS03 rna N/A N/A A0A125YQ85 39690155
    937044 9g6k:UF (2.89) BS04 rna N/A N/A A0A125YQ85 39690155
    937045 9g6k:UF (2.89) BS05 rna N/A N/A A0A125YQ85 39690155
    937046 9g6k:UG (2.89) BS01 rna N/A N/A S8GSN6 39690155
    937047 9g6k:UG (2.89) BS02 rna N/A N/A S8GSN6 39690155
    937048 9g6k:UG (2.89) BS03 rna N/A N/A S8GSN6 39690155
    937049 9g6k:UH (2.89) BS01 rna N/A N/A N/A 39690155
    937050 9g6k:UH (2.89) BS02 rna N/A N/A N/A 39690155
    937051 9g6k:UI (2.89) BS01 rna N/A N/A A0A0F7V869 39690155
    937052 9g6k:UI (2.89) BS02 rna N/A N/A A0A0F7V869 39690155
    937053 9g6q:H (1.2) BS01 RBR N/A N/A N/A 39892658
    937054 9g6q:L (1.2) BS01 RBR N/A N/A N/A 39892658
    937055 9g6r:H (1.72) BS01 RBR N/A N/A N/A 39892658
    937056 9g6r:L (1.72) BS01 RBR N/A N/A N/A 39892658
    937057 9g6s:H (2.373) BS01 RBR N/A N/A N/A 39892658
    937058 9g6s:L (2.373) BS01 RBR N/A N/A N/A 39892658
    937059 9g6z:A (2.22) BS01 peptide N/A N/A Q09293 37758951
    937060 9g7h:A (1.75) BS01 AR6 N/A GO:0070403 ... Q8N6T7 38940296
    937061 9g7h:A (1.75) BS02 ZN N/A GO:0070403 ... Q8N6T7 38940296
    937062 9g7h:A (1.75) BS03 A1IIZ N/A GO:0070403 ... Q8N6T7 38940296
    937063 9g7h:B (1.75) BS01 AR6 N/A GO:0070403 ... Q8N6T7 38940296
    937064 9g7h:B (1.75) BS02 ZN N/A GO:0070403 ... Q8N6T7 38940296
    937065 9g7i:A (2.93) BS01 SF4 N/A N/A F8TEQ9 39883773
    937066 9g7i:B (2.93) BS01 SF4 N/A N/A N/A 39883773
    937067 9g7i:B (2.93) BS02 XCC N/A N/A N/A 39883773
    937068 9g7i:B (2.93) BS03 SF4 N/A N/A N/A 39883773
    937069 9g7i:C (2.93) BS01 SF4 N/A N/A N/A 39883773
    937070 9g7i:C (2.93) BS02 SF4 N/A N/A N/A 39883773
    937071 9g7i:C (2.93) BS03 XCC N/A N/A N/A 39883773
    937072 9g7i:C (2.93) BS04 CA N/A N/A N/A 39883773
    937073 9g7i:C (2.93) BS05 CA N/A N/A N/A 39883773
    937074 9g7i:D (2.93) BS01 SF4 N/A N/A F8TEQ9 39883773
    937075 9g7i:D (2.93) BS02 ACO N/A N/A F8TEQ9 39883773
    937076 9g7i:D (2.93) BS03 CA N/A N/A F8TEQ9 39883773
    937077 9g7i:D (2.93) BS04 CA N/A N/A F8TEQ9 39883773
    937078 9g7m:A (2.8) BS01 CA N/A N/A A0A2A9JQY3 N/A
    937079 9g7p:AAA (1.861) BS01 MG N/A N/A N/A N/A
    937080 9g7p:BBB (1.861) BS01 MG N/A N/A N/A N/A
    937081 9g7p:CCC (1.861) BS01 MG N/A N/A N/A N/A
    937082 9g8c:A (1.9) BS01 EL5 N/A N/A A9CI81 39561028
    937083 9g8c:B (1.9) BS01 EL5 N/A N/A A9CI81 39561028
    937084 9g8d:A (2.059) BS01 EL5 N/A N/A A9CI81 39561028
    937085 9g8d:B (2.059) BS01 EL5 N/A N/A A9CI81 39561028
    937086 9g8m:A (3.3) BS01 rna N/A GO:0003723 ... Q15477 39385025
    937087 9g8m:I (3.3) BS01 rna N/A GO:0000175 ... Q13868 39385025
    937088 9g8m:J (3.3) BS01 rna N/A GO:0000176 ... Q9Y3B2 39385025
    937089 9g8m:K (3.3) BS01 rna N/A GO:0000175 ... Q06265 39385025
    937090 9g8m:L (3.3) BS01 rna N/A GO:0000175 ... Q9NPD3 39385025
    937091 9g8m:LA (3.3) BS01 rna N/A GO:0002181 ... P62917 39385025
    937092 9g8m:LA (3.3) BS02 rna N/A GO:0002181 ... P62917 39385025
    937093 9g8m:LB (3.3) BS01 rna N/A GO:0002181 ... P39023 39385025
    937094 9g8m:LC (3.3) BS01 rna N/A GO:0002181 ... P36578 39385025
    937095 9g8m:LC (3.3) BS02 rna N/A GO:0002181 ... P36578 39385025
    937096 9g8m:LD (3.3) BS01 rna N/A GO:0000027 ... P46777 39385025
    937097 9g8m:LD (3.3) BS02 rna N/A GO:0000027 ... P46777 39385025
    937098 9g8m:LE (3.3) BS01 rna N/A GO:0002181 ... Q02878 39385025
    937099 9g8m:LF (3.3) BS01 rna N/A GO:0000463 ... P18124 39385025
    937100 9g8m:LG (3.3) BS01 rna N/A GO:0000470 ... P62424 39385025
    937101 9g8m:LG (3.3) BS02 rna N/A GO:0000470 ... P62424 39385025
    937102 9g8m:LH (3.3) BS01 rna N/A GO:0002181 ... P32969 39385025
    937103 9g8m:LI (3.3) BS01 rna N/A GO:0000027 ... Q96L21 39385025
    937104 9g8m:LI (3.3) BS02 rna N/A GO:0000027 ... Q96L21 39385025
    937105 9g8m:LJ (3.3) BS01 rna N/A GO:0000027 ... P62913 39385025
    937106 9g8m:LJ (3.3) BS02 rna N/A GO:0000027 ... P62913 39385025
    937107 9g8m:LL (3.3) BS01 rna N/A GO:0001824 ... P26373 39385025
    937108 9g8m:LM (3.3) BS01 rna N/A GO:0002181 ... P50914 39385025
    937109 9g8m:LN (3.3) BS01 rna N/A GO:0002181 ... P61313 39385025
    937110 9g8m:LN (3.3) BS02 rna N/A GO:0002181 ... P61313 39385025
    937111 9g8m:LO (3.3) BS01 rna N/A GO:0002181 ... P40429 39385025
    937112 9g8m:LP (3.3) BS01 rna N/A GO:0002181 ... P18621 39385025
    937113 9g8m:LP (3.3) BS02 rna N/A GO:0002181 ... P18621 39385025
    937114 9g8m:LQ (3.3) BS01 rna N/A GO:0002181 ... Q07020 39385025
    937115 9g8m:LR (3.3) BS01 rna N/A GO:0002181 ... P84098 39385025
    937116 9g8m:LR (3.3) BS02 rna N/A GO:0002181 ... P84098 39385025
    937117 9g8m:LS (3.3) BS01 rna N/A GO:0002181 ... Q02543 39385025
    937118 9g8m:LS (3.3) BS02 rna N/A GO:0002181 ... Q02543 39385025
    937119 9g8m:LT (3.3) BS01 rna N/A GO:0002181 ... P46778 39385025
    937120 9g8m:LU (3.3) BS01 rna N/A GO:0002181 ... P35268 39385025
    937121 9g8m:LV (3.3) BS01 rna N/A GO:0000122 ... P62829 39385025
    937122 9g8m:LW (3.3) BS01 rna N/A GO:0000027 ... P83731 39385025
    937123 9g8m:LW (3.3) BS02 rna N/A GO:0000027 ... P83731 39385025
    937124 9g8m:LX (3.3) BS01 rna N/A GO:0002181 ... P62750 39385025
    937125 9g8m:LX (3.3) BS02 rna N/A GO:0002181 ... P62750 39385025
    937126 9g8m:LY (3.3) BS01 rna N/A GO:0002181 ... P61254 39385025
    937127 9g8m:LY (3.3) BS02 rna N/A GO:0002181 ... P61254 39385025
    937128 9g8m:LZ (3.3) BS01 rna N/A GO:0002181 ... P61353 39385025
    937129 9g8m:La (3.3) BS01 rna N/A GO:0002181 ... P46776 39385025
    937130 9g8m:Lb (3.3) BS01 rna N/A GO:0002181 ... P47914 39385025
    937131 9g8m:Lc (3.3) BS01 rna N/A GO:0002181 ... P62888 39385025
    937132 9g8m:Ld (3.3) BS01 rna N/A GO:0002181 ... P62899 39385025
    937133 9g8m:Le (3.3) BS01 rna N/A GO:0002181 ... P62910 39385025
    937134 9g8m:Lf (3.3) BS01 rna N/A GO:0000049 ... P18077 39385025
    937135 9g8m:Lg (3.3) BS01 rna N/A GO:0002181 ... P49207 39385025
    937136 9g8m:Lh (3.3) BS01 rna N/A GO:0000463 ... P42766 39385025
    937137 9g8m:Lh (3.3) BS02 rna N/A GO:0000463 ... P42766 39385025
    937138 9g8m:Li (3.3) BS01 rna N/A GO:0002181 ... Q9Y3U8 39385025
    937139 9g8m:Lj (3.3) BS01 rna N/A GO:0002181 ... P61927 39385025
    937140 9g8m:Lj (3.3) BS02 rna N/A GO:0002181 ... P61927 39385025
    937141 9g8m:Lj (3.3) BS03 ZN N/A GO:0002181 ... P61927 39385025
    937142 9g8m:Lk (3.3) BS01 rna N/A GO:0001501 ... P63173 39385025
    937143 9g8m:Ll (3.3) BS01 rna N/A GO:0002181 ... P62891 39385025
    937144 9g8m:Ll (3.3) BS02 rna N/A GO:0002181 ... P62891 39385025
    937145 9g8m:Lm (3.3) BS01 rna N/A GO:0002181 ... P62987 39385025
    937146 9g8m:Lm (3.3) BS02 ZN N/A GO:0002181 ... P62987 39385025
    937147 9g8m:Lo (3.3) BS01 rna N/A GO:0002181 ... P83881 39385025
    937148 9g8m:Lo (3.3) BS02 ZN N/A GO:0002181 ... P83881 39385025
    937149 9g8m:Lp (3.3) BS01 rna N/A GO:0002181 ... P61513 39385025
    937150 9g8m:Lp (3.3) BS02 ZN N/A GO:0002181 ... P61513 39385025
    937151 9g8m:Lr (3.3) BS01 rna N/A GO:0002181 ... P46779 39385025
    937152 9g8m:Lr (3.3) BS02 MG N/A GO:0002181 ... P46779 39385025
    937153 9g8m:M (3.3) BS01 rna N/A GO:0000175 ... Q8TF46 39385025
    937154 9g8m:SA (3.3) BS01 rna N/A GO:0000028 ... P08865 39385025
    937155 9g8m:SB (3.3) BS01 rna N/A GO:0002181 ... P61247 39385025
    937156 9g8m:SC (3.3) BS01 rna N/A GO:0002181 ... P15880 39385025
    937157 9g8m:SD (3.3) BS01 rna N/A GO:0000977 ... P23396 39385025
    937158 9g8m:SD (3.3) BS02 rna N/A GO:0000977 ... P23396 39385025
    937159 9g8m:SE (3.3) BS01 rna N/A GO:0002181 ... P62701 39385025
    937160 9g8m:SF (3.3) BS01 rna N/A GO:0000028 ... P46782 39385025
    937161 9g8m:SF (3.3) BS02 rna N/A GO:0000028 ... P46782 39385025
    937162 9g8m:SG (3.3) BS01 rna N/A GO:0000082 ... P62753 39385025
    937163 9g8m:SH (3.3) BS01 rna N/A GO:0001843 ... P62081 39385025
    937164 9g8m:SI (3.3) BS01 rna N/A GO:0000462 ... P62241 39385025
    937165 9g8m:SJ (3.3) BS01 rna N/A GO:0002181 ... P46781 39385025
    937166 9g8m:SK (3.3) BS01 rna N/A GO:0002181 ... P46783 39385025
    937167 9g8m:SL (3.3) BS01 rna N/A GO:0002181 ... P62280 39385025
    937168 9g8m:SM (3.3) BS01 rna N/A GO:0002181 ... P25398 39385025
    937169 9g8m:SN (3.3) BS01 rna N/A GO:0002181 ... P62277 39385025
    937170 9g8m:SN (3.3) BS02 rna N/A GO:0002181 ... P62277 39385025
    937171 9g8m:SO (3.3) BS01 rna N/A GO:0000028 ... P62263 39385025
    937172 9g8m:SP (3.3) BS01 rna N/A GO:0000028 ... P62841 39385025
    937173 9g8m:SQ (3.3) BS01 rna N/A GO:0000462 ... P62249 39385025
    937174 9g8m:SR (3.3) BS01 rna N/A GO:0002181 ... P08708 39385025
    937175 9g8m:SS (3.3) BS01 rna N/A GO:0002181 ... P62269 39385025
    937176 9g8m:ST (3.3) BS01 rna N/A GO:0000028 ... P39019 39385025
    937177 9g8m:SU (3.3) BS01 rna N/A GO:0002181 ... P60866 39385025
    937178 9g8m:SW (3.3) BS01 rna N/A GO:0002181 ... P62244 39385025
    937179 9g8m:SX (3.3) BS01 rna N/A GO:0002181 ... P62266 39385025
    937180 9g8m:SY (3.3) BS01 rna N/A GO:0002181 ... P62847 39385025
    937181 9g8m:SZ (3.3) BS01 rna N/A GO:0002181 ... P62851 39385025
    937182 9g8m:SZ (3.3) BS02 rna N/A GO:0002181 ... P62851 39385025
    937183 9g8m:Sa (3.3) BS01 rna N/A GO:0002181 ... P62854 39385025
    937184 9g8m:Sa (3.3) BS02 ZN N/A GO:0002181 ... P62854 39385025
    937185 9g8m:Sb (3.3) BS01 rna N/A GO:0000028 ... P42677 39385025
    937186 9g8m:Sc (3.3) BS01 rna N/A GO:0000028 ... P62857 39385025
    937187 9g8m:Sc (3.3) BS02 rna N/A GO:0000028 ... P62857 39385025
    937188 9g8m:Sc (3.3) BS03 MG N/A GO:0000028 ... P62857 39385025
    937189 9g8m:Sd (3.3) BS01 rna N/A GO:0002181 ... P62273 39385025
    937190 9g8m:Se (3.3) BS01 rna N/A N/A P62861 39385025
    937191 9g8m:Se (3.3) BS02 rna N/A N/A P62861 39385025
    937192 9g8m:Sf (3.3) BS01 rna N/A GO:0002181 ... P62979 39385025
    937193 9g8m:Sg (3.3) BS01 rna N/A GO:0001891 ... P63244 39385025
    937194 9g8n:A (3.7) BS01 rna N/A GO:0003723 ... Q15477 39385025
    937195 9g8n:I (3.7) BS01 rna N/A GO:0000175 ... Q13868 39385025
    937196 9g8n:J (3.7) BS01 rna N/A GO:0000176 ... Q9Y3B2 39385025
    937197 9g8n:K (3.7) BS01 rna N/A GO:0000175 ... Q06265 39385025
    937198 9g8n:L (3.7) BS01 rna N/A GO:0000175 ... Q9NPD3 39385025
    937199 9g8n:M (3.7) BS01 rna N/A GO:0000175 ... Q8TF46 39385025
    937200 9g8o:A (3.4) BS01 rna N/A GO:0003723 ... Q15477 39385025

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).