SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    937401 9g9j:H (3.05) BS01 rna N/A N/A E6LHV3 39817514
    937402 9g9k:A (3.34) BS01 rna N/A N/A E6LHV7 39817514
    937403 9g9k:A (3.34) BS02 rna N/A N/A E6LHV7 39817514
    937404 9g9k:A (3.34) BS03 ZAN N/A N/A E6LHV7 39817514
    937405 9g9k:A (3.34) BS04 ZAN N/A N/A E6LHV7 39817514
    937406 9g9k:A (3.34) BS05 MG N/A N/A E6LHV7 39817514
    937407 9g9k:C (3.34) BS01 rna N/A N/A E6LHV6 39817514
    937408 9g9k:D (3.34) BS01 rna N/A N/A E6LHV5 39817514
    937409 9g9k:D (3.34) BS02 rna N/A N/A E6LHV5 39817514
    937410 9g9k:E (3.34) BS01 rna N/A N/A E6LHV5 39817514
    937411 9g9k:E (3.34) BS02 rna N/A N/A E6LHV5 39817514
    937412 9g9k:F (3.34) BS01 rna N/A N/A E6LHV5 39817514
    937413 9g9k:F (3.34) BS02 rna N/A N/A E6LHV5 39817514
    937414 9g9k:G (3.34) BS01 rna N/A N/A E6LHV4 39817514
    937415 9g9k:G (3.34) BS02 rna N/A N/A E6LHV4 39817514
    937416 9g9k:H (3.34) BS01 rna N/A N/A E6LHV3 39817514
    937417 9g9k:I (3.34) BS01 rna N/A N/A E6LHV5 39817514
    937418 9g9k:I (3.34) BS02 rna N/A N/A E6LHV5 39817514
    937419 9g9q:A (2.03) BS01 HEM N/A GO:0016491 ... Q0SCI3 39307304
    937420 9g9q:A (2.03) BS02 ANN N/A GO:0016491 ... Q0SCI3 39307304
    937421 9g9q:B (2.03) BS01 HEM N/A GO:0016491 ... Q0SCI3 39307304
    937422 9g9q:B (2.03) BS02 ANN N/A GO:0016491 ... Q0SCI3 39307304
    937423 9g9r:A (1.65) BS01 HEM N/A GO:0016491 ... Q0SCI3 39307304
    937424 9g9r:A (1.65) BS02 EGM N/A GO:0016491 ... Q0SCI3 39307304
    937425 9g9r:B (1.65) BS01 HEM N/A GO:0016491 ... Q0SCI3 39307304
    937426 9g9r:B (1.65) BS02 EGM N/A GO:0016491 ... Q0SCI3 39307304
    937427 9g9s:A (1.85) BS01 HEM N/A GO:0016491 ... Q0SCI3 39307304
    937428 9g9s:A (1.85) BS02 TWO N/A GO:0016491 ... Q0SCI3 39307304
    937429 9g9s:B (1.85) BS01 HEM N/A GO:0016491 ... Q0SCI3 39307304
    937430 9g9s:B (1.85) BS02 TWO N/A GO:0016491 ... Q0SCI3 39307304
    937431 9g9v:A (3.32) BS01 Y01 N/A N/A Q9NPC2 39637865
    937432 9g9v:B (3.32) BS01 Y01 N/A N/A Q9NPC2 39637865
    937433 9g9w:A (2.48) BS01 Y01 N/A N/A Q9NPC2 39637865
    937434 9g9w:A (2.48) BS02 Y01 N/A N/A Q9NPC2 39637865
    937435 9g9w:A (2.48) BS03 Y01 N/A N/A Q9NPC2 39637865
    937436 9g9w:B (2.48) BS01 Y01 N/A N/A Q9NPC2 39637865
    937437 9g9w:B (2.48) BS02 Y01 N/A N/A Q9NPC2 39637865
    937438 9g9w:B (2.48) BS03 Y01 N/A N/A Q9NPC2 39637865
    937439 9g9x:A (3.13) BS01 Y01 N/A N/A O14649 39637865
    937440 9g9x:A (3.13) BS02 Y01 N/A N/A O14649 39637865
    937441 9g9x:A (3.13) BS03 Y01 N/A N/A O14649 39637865
    937442 9g9x:B (3.13) BS01 Y01 N/A N/A O14649 39637865
    937443 9g9x:B (3.13) BS02 Y01 N/A N/A O14649 39637865
    937444 9g9x:B (3.13) BS03 Y01 N/A N/A O14649 39637865
    937445 9gac:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    937446 9gac:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    937447 9gaf:A (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    937448 9gaf:C (1.9) BS01 GLY 3.5.1.26 GO:0003948 ... Q47898 10490104
    937449 9gag:A (-1.00) BS01 peptide N/A N/A P50542 N/A
    937450 9gan:A (3.32) BS01 rna N/A N/A Q1K9H2 39673795
    937451 9gan:A (3.32) BS02 rna N/A N/A Q1K9H2 39673795
    937452 9gan:A (3.32) BS03 peptide N/A N/A Q1K9H2 39673795
    937453 9gan:A (3.32) BS04 A1IJK N/A N/A Q1K9H2 39673795
    937454 9gao:A (1.95) BS01 A1IJM N/A N/A Q96SW2 39406745
    937455 9gao:A (1.95) BS02 ZN N/A N/A Q96SW2 39406745
    937456 9gao:C (1.95) BS01 A1IJM N/A N/A Q96SW2 39406745
    937457 9gao:C (1.95) BS02 ZN N/A N/A Q96SW2 39406745
    937458 9gap:A (4.0) BS01 rna N/A N/A Q1K9H2 39673795
    937459 9gap:A (4.0) BS02 rna N/A N/A Q1K9H2 39673795
    937460 9gap:A (4.0) BS03 peptide N/A N/A Q1K9H2 39673795
    937461 9gap:A (4.0) BS04 A1IJK N/A N/A Q1K9H2 39673795
    937462 9gaq:A (3.6) BS01 rna N/A N/A Q1K9H2 39673795
    937463 9gaq:A (3.6) BS02 rna N/A N/A Q1K9H2 39673795
    937464 9gaq:A (3.6) BS03 peptide N/A N/A Q1K9H2 39673795
    937465 9gas:A (3.08) BS01 rna N/A N/A Q1K9H2 39673795
    937466 9gas:A (3.08) BS02 rna N/A N/A Q1K9H2 39673795
    937467 9gas:A (3.08) BS03 peptide N/A N/A Q1K9H2 39673795
    937468 9gat:A (3.2) BS01 rna N/A N/A Q1K9H2 39673795
    937469 9gat:A (3.2) BS02 rna N/A N/A Q1K9H2 39673795
    937470 9gat:A (3.2) BS03 A1IJK N/A N/A Q1K9H2 39673795
    937471 9gat:B (3.2) BS01 rna N/A N/A Q1K9H2 39673795
    937472 9gat:B (3.2) BS02 rna N/A N/A Q1K9H2 39673795
    937473 9gat:B (3.2) BS03 A1IJK N/A N/A Q1K9H2 39673795
    937474 9gat:C (3.2) BS01 rna N/A N/A Q1K9H2 39673795
    937475 9gat:C (3.2) BS02 rna N/A N/A Q1K9H2 39673795
    937476 9gat:C (3.2) BS03 peptide N/A N/A Q1K9H2 39673795
    937477 9gat:C (3.2) BS04 A1IJK N/A N/A Q1K9H2 39673795
    937478 9gat:I (3.2) BS01 rna N/A N/A Q1K9H2 39673795
    937479 9gat:I (3.2) BS02 rna N/A N/A Q1K9H2 39673795
    937480 9gat:I (3.2) BS03 A1IJK N/A N/A Q1K9H2 39673795
    937481 9gat:J (3.2) BS01 rna N/A N/A Q1K9H2 39673795
    937482 9gat:J (3.2) BS02 rna N/A N/A Q1K9H2 39673795
    937483 9gat:J (3.2) BS03 A1IJK N/A N/A Q1K9H2 39673795
    937484 9gat:K (3.2) BS01 peptide N/A N/A Q1K9H2 39673795
    937485 9gat:K (3.2) BS02 rna N/A N/A Q1K9H2 39673795
    937486 9gat:K (3.2) BS03 rna N/A N/A Q1K9H2 39673795
    937487 9gat:K (3.2) BS04 A1IJK N/A N/A Q1K9H2 39673795
    937488 9gav:A (3.04) BS01 rna N/A N/A Q1K9H2 39673795
    937489 9gav:A (3.04) BS02 rna N/A N/A Q1K9H2 39673795
    937490 9gav:A (3.04) BS03 A1IJK N/A N/A Q1K9H2 39673795
    937491 9gav:B (3.04) BS01 peptide N/A N/A Q1K9H2 39673795
    937492 9gav:B (3.04) BS02 rna N/A N/A Q1K9H2 39673795
    937493 9gav:B (3.04) BS03 rna N/A N/A Q1K9H2 39673795
    937494 9gav:B (3.04) BS04 A1IJK N/A N/A Q1K9H2 39673795
    937495 9gaw:C (2.9) BS01 ZN N/A GO:0000278 ... Q9NYG5 39567505
    937496 9gaw:C (2.9) BS02 ZN N/A GO:0000278 ... Q9NYG5 39567505
    937497 9gaw:C (2.9) BS03 ZN N/A GO:0000278 ... Q9NYG5 39567505
    937498 9gaw:K (2.9) BS01 peptide N/A GO:0005515 ... Q13042 39567505
    937499 9gaw:N (2.9) BS01 ZN N/A GO:0005515 ... Q9UJX6 39567505
    937500 9gaw:Q (2.9) BS01 peptide N/A GO:0005515 ... Q13042 39567505
    937501 9gaw:S (2.9) BS01 ZN N/A GO:0001556 ... Q9UKT4 39567505
    937502 9gaw:S (2.9) BS02 ZN N/A GO:0001556 ... Q9UKT4 39567505
    937503 9gax:A (1.93) BS01 A1IJL N/A N/A P28347 39704449
    937504 9gax:B (1.93) BS01 A1IJL N/A N/A P28347 39704449
    937505 9gbe:A (1.58) BS01 A1IJ8 N/A GO:0004672 ... Q9UM73 39269178
    937506 9gbf:A (1.76) BS01 ZN N/A N/A O96028 39656918
    937507 9gbf:A (1.76) BS02 ZN N/A N/A O96028 39656918
    937508 9gbf:A (1.76) BS03 ZN N/A N/A O96028 39656918
    937509 9gbf:A (1.76) BS04 ZN N/A N/A O96028 39656918
    937510 9gbf:B (1.76) BS01 ZN N/A N/A O96028 39656918
    937511 9gbf:B (1.76) BS02 ZN N/A N/A O96028 39656918
    937512 9gbf:B (1.76) BS03 ZN N/A N/A O96028 39656918
    937513 9gbf:B (1.76) BS04 ZN N/A N/A O96028 39656918
    937514 9gbh:AAA (2.375) BS01 A1IJV N/A GO:0002003 ... P23946 39541507
    937515 9gbh:AAA (2.375) BS02 ZN N/A GO:0002003 ... P23946 39541507
    937516 9gbl:A (2.4) BS01 ZN N/A N/A P12821 39763019
    937517 9gbl:A (2.4) BS02 A1IJY N/A N/A P12821 39763019
    937518 9gbm:A (1.9) BS01 FUC N/A N/A P12821 39763019
    937519 9gbm:A (1.9) BS02 ZN N/A N/A P12821 39763019
    937520 9gbm:A (1.9) BS03 A1IJW N/A N/A P12821 39763019
    937521 9gbn:A (2.0) BS01 FUC N/A N/A P12821 39763019
    937522 9gbn:A (2.0) BS02 ZN N/A N/A P12821 39763019
    937523 9gbn:A (2.0) BS03 A1IJZ N/A N/A P12821 39763019
    937524 9gbo:A (2.0) BS01 ZN N/A N/A P12821 39763019
    937525 9gbo:A (2.0) BS02 BJ2 N/A N/A P12821 39763019
    937526 9gbp:A (2.0) BS01 A1IJW N/A N/A P12821 39763019
    937527 9gbp:A (2.0) BS02 ZN N/A N/A P12821 39763019
    937528 9gbp:A (2.0) BS03 MG N/A N/A P12821 39763019
    937529 9gbp:B (2.0) BS01 A1IJW N/A N/A P12821 39763019
    937530 9gbp:B (2.0) BS02 ZN N/A N/A P12821 39763019
    937531 9gbp:B (2.0) BS03 MG N/A N/A P12821 39763019
    937532 9gbq:A (1.9) BS01 ZN N/A N/A P12821 39763019
    937533 9gbq:A (1.9) BS02 A1IJZ N/A N/A P12821 39763019
    937534 9gbq:B (1.9) BS01 ZN N/A N/A P12821 39763019
    937535 9gbq:B (1.9) BS02 MG N/A N/A P12821 39763019
    937536 9gbq:B (1.9) BS03 A1IJZ N/A N/A P12821 39763019
    937537 9gbr:A (1.9) BS01 ZN N/A N/A P12821 39763019
    937538 9gbr:A (1.9) BS02 A1IJX N/A N/A P12821 39763019
    937539 9gbr:B (1.9) BS01 ZN N/A N/A P12821 39763019
    937540 9gbr:B (1.9) BS02 A1IJX N/A N/A P12821 39763019
    937541 9gbs:A (1.9) BS01 FUC N/A N/A P12821 39763019
    937542 9gbs:A (1.9) BS02 A1IJY N/A N/A P12821 39763019
    937543 9gbs:A (1.9) BS03 ZN N/A N/A P12821 39763019
    937544 9gbs:B (1.9) BS01 A1IJY N/A N/A P12821 39763019
    937545 9gbs:B (1.9) BS02 ZN N/A N/A P12821 39763019
    937546 9gbv:A (2.32) BS01 dna N/A GO:0003677 ... P0AES4 N/A
    937547 9gbv:A (2.32) BS02 dna N/A GO:0003677 ... P0AES4 N/A
    937548 9gbv:B (2.32) BS01 dna N/A GO:0003677 ... P0AES6 N/A
    937549 9gbv:B (2.32) BS02 dna N/A GO:0003677 ... P0AES6 N/A
    937550 9gbv:C (2.32) BS01 dna N/A GO:0003677 ... P0AES4 N/A
    937551 9gbv:C (2.32) BS02 dna N/A GO:0003677 ... P0AES4 N/A
    937552 9gbv:D (2.32) BS01 dna N/A GO:0003677 ... P0AES6 N/A
    937553 9gbv:D (2.32) BS02 dna N/A GO:0003677 ... P0AES6 N/A
    937554 9gbw:B (3.5) BS01 rna N/A N/A N/A 39809272
    937555 9gbw:C (3.5) BS01 rna N/A N/A N/A 39809272
    937556 9gbw:C (3.5) BS02 rna N/A N/A N/A 39809272
    937557 9gbw:D (3.5) BS01 rna N/A N/A N/A 39809272
    937558 9gbw:E (3.5) BS01 rna N/A N/A N/A 39809272
    937559 9gbw:E (3.5) BS02 rna N/A N/A N/A 39809272
    937560 9gbw:F (3.5) BS01 rna N/A N/A N/A 39809272
    937561 9gbw:F (3.5) BS02 rna N/A N/A N/A 39809272
    937562 9gbw:h (3.5) BS01 rna N/A N/A N/A 39809272
    937563 9gbw:i (3.5) BS01 rna N/A N/A N/A 39809272
    937564 9gbw:j (3.5) BS01 rna N/A N/A N/A 39809272
    937565 9gbw:k (3.5) BS01 rna N/A N/A N/A 39809272
    937566 9gbw:l (3.5) BS01 rna N/A N/A N/A 39809272
    937567 9gbw:m (3.5) BS01 rna N/A N/A N/A 39809272
    937568 9gbw:n (3.5) BS01 rna N/A N/A N/A 39809272
    937569 9gbz:B (3.4) BS01 rna N/A N/A N/A 39809272
    937570 9gbz:C (3.4) BS01 rna N/A N/A N/A 39809272
    937571 9gbz:C (3.4) BS02 rna N/A N/A N/A 39809272
    937572 9gc0:D (3.2) BS01 rna N/A N/A N/A 39809272
    937573 9gc0:F (3.2) BS01 rna N/A N/A N/A 39809272
    937574 9gc0:h (3.2) BS01 rna N/A N/A N/A 39809272
    937575 9gc0:i (3.2) BS01 rna N/A N/A N/A 39809272
    937576 9gc0:j (3.2) BS01 rna N/A N/A N/A 39809272
    937577 9gc0:k (3.2) BS01 rna N/A N/A N/A 39809272
    937578 9gc0:l (3.2) BS01 rna N/A N/A N/A 39809272
    937579 9gc0:m (3.2) BS01 rna N/A N/A N/A 39809272
    937580 9gc0:n (3.2) BS01 rna N/A N/A N/A 39809272
    937581 9gc1:AAA (1.987) BS01 A1IJO N/A GO:0002003 ... P23946 39541507
    937582 9gc1:AAA (1.987) BS02 ZN N/A GO:0002003 ... P23946 39541507
    937583 9gc1:AAA (1.987) BS03 ZN N/A GO:0002003 ... P23946 39541507
    937584 9gc3:A (2.46) BS01 dna N/A GO:0000127 ... P34111 39657784
    937585 9gc3:A (2.46) BS02 dna N/A GO:0000127 ... P34111 39657784
    937586 9gc3:B (2.46) BS01 dna N/A GO:0000127 ... Q06339 39657784
    937587 9gc3:B (2.46) BS02 dna N/A GO:0000127 ... Q06339 39657784
    937588 9gc3:C (2.46) BS01 dna N/A GO:0000127 ... Q12308 39657784
    937589 9gc4:A (2.415) BS01 peptide N/A N/A P00533 39869768
    937590 9gc4:A (2.415) BS02 A1IZ7 N/A N/A P00533 39869768
    937591 9gc4:B (2.415) BS01 peptide N/A N/A P00533 39869768
    937592 9gc4:B (2.415) BS02 A1IZ7 N/A N/A P00533 39869768
    937593 9gc5:A (1.909) BS01 A1IZ8 N/A N/A P00533 39869768
    937594 9gc5:B (1.909) BS01 A1IZ8 N/A N/A P00533 39869768
    937595 9gc6:A (1.901) BS01 A1IZ9 N/A N/A P00533 39869768
    937596 9gc6:B (1.901) BS01 A1IZ9 N/A N/A P00533 39869768
    937597 9gc9:AAA (2.203) BS01 A1IJ3 N/A GO:0002003 ... P23946 39541507
    937598 9gc9:AAA (2.203) BS02 ZN N/A GO:0002003 ... P23946 39541507
    937599 9gcc:AAA (1.793) BS01 A1IJ0 N/A GO:0002003 ... P23946 39541507
    937600 9gcc:AAA (1.793) BS02 ZN N/A GO:0002003 ... P23946 39541507

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).