SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    937801 9gd3:G (3.0) BS02 dna N/A GO:0000786 ... P06897 39270644
    937802 9gd3:H (3.0) BS01 dna N/A GO:0000786 ... P02281 39270644
    937803 9gd3:W (3.0) BS01 dna N/A GO:0000123 ... P32657 39270644
    937804 9gd3:W (3.0) BS02 dna N/A GO:0000123 ... P32657 39270644
    937805 9gd3:W (3.0) BS03 ADP N/A GO:0000123 ... P32657 39270644
    937806 9gd3:W (3.0) BS04 BEF N/A GO:0000123 ... P32657 39270644
    937807 9gd3:W (3.0) BS05 MG N/A GO:0000123 ... P32657 39270644
    937808 9gd4:A (2.039) BS01 GDP N/A N/A P25342 N/A
    937809 9gd4:A (2.039) BS02 GDP N/A N/A P25342 N/A
    937810 9gd4:B (2.039) BS01 GDP N/A N/A P32457 N/A
    937811 9gd4:B (2.039) BS02 GDP N/A N/A P32457 N/A
    937812 9gd4:C (2.039) BS01 GDP N/A N/A P32468 N/A
    937813 9gd4:C (2.039) BS02 GDP N/A N/A P32468 N/A
    937814 9gd4:D (2.039) BS01 GDP N/A N/A Q07657 N/A
    937815 9gd4:D (2.039) BS02 GDP N/A N/A Q07657 N/A
    937816 9gdi:A (2.81) BS01 A1IJ1 N/A GO:0001779 ... O00329 39635891
    937817 9gdj:A (1.47) BS01 SAH N/A N/A N/A 39926702
    937818 9gdj:B (1.47) BS01 SAH N/A N/A N/A 39926702
    937819 9gdj:C (1.47) BS01 SAH N/A N/A N/A 39926702
    937820 9gdv:A (2.218) BS01 Q6K N/A N/A P00533 39869768
    937821 9gdv:B (2.218) BS01 Q6K N/A N/A P00533 39869768
    937822 9gef:A (2.62) BS01 dna N/A N/A P72525 39361644
    937823 9gef:A (2.62) BS02 dna N/A N/A P72525 39361644
    937824 9gef:A (2.62) BS03 dna N/A N/A P72525 39361644
    937825 9gef:A (2.62) BS04 MG N/A N/A P72525 39361644
    937826 9gef:A (2.62) BS05 TE9 N/A N/A P72525 39361644
    937827 9gef:B (2.62) BS01 dna N/A N/A P72525 39361644
    937828 9gef:B (2.62) BS02 dna N/A N/A P72525 39361644
    937829 9gef:B (2.62) BS03 dna N/A N/A P72525 39361644
    937830 9gef:B (2.62) BS04 MG N/A N/A P72525 39361644
    937831 9gef:B (2.62) BS05 TE9 N/A N/A P72525 39361644
    937832 9gek:A (2.15) BS01 FRU N/A N/A Q969Z0 39727163
    937833 9gek:A (2.15) BS02 GLC N/A N/A Q969Z0 39727163
    937834 9gek:A (2.15) BS03 FRU N/A N/A Q969Z0 39727163
    937835 9gf9:A (1.76) BS01 peptide N/A N/A P61823 39714600
    937836 9gf9:A (1.76) BS02 peptide N/A N/A P61823 39714600
    937837 9gf9:B (1.76) BS01 peptide N/A N/A P61823 39714600
    937838 9gf9:B (1.76) BS02 peptide N/A N/A P61823 39714600
    937839 9gf9:C (1.76) BS01 peptide N/A N/A P61823 39714600
    937840 9gf9:D (1.76) BS01 peptide N/A N/A P61823 39714600
    937841 9gf9:E (1.76) BS01 peptide N/A N/A P61823 39714600
    937842 9gf9:F (1.76) BS01 peptide N/A N/A P61823 39714600
    937843 9gfc:A (2.501) BS01 peptide N/A N/A Q00987 39714600
    937844 9gfc:B (2.501) BS01 peptide N/A N/A Q00987 39714600
    937845 9gfc:C (2.501) BS01 peptide N/A N/A Q00987 39714600
    937846 9gfe:A (1.583) BS01 peptide N/A N/A P10276 39714600
    937847 9gfe:A (1.583) BS02 EQN N/A N/A P10276 39714600
    937848 9gfi:A (2.1) BS01 peptide N/A N/A P10276 39714600
    937849 9gfi:A (2.1) BS02 EQN N/A N/A P10276 39714600
    937850 9gft:1 (3.1) BS01 rna N/A N/A N/A 39922193
    937851 9gft:2 (3.1) BS01 rna N/A N/A N/A 39922193
    937852 9gft:2 (3.1) BS02 rna N/A N/A N/A 39922193
    937853 9gft:3 (3.1) BS01 rna N/A N/A N/A 39922193
    937854 9gft:4 (3.1) BS01 rna N/A N/A N/A 39922193
    937855 9gft:4 (3.1) BS02 rna N/A N/A N/A 39922193
    937856 9gft:5 (3.1) BS01 rna N/A N/A N/A 39922193
    937857 9gft:6 (3.1) BS01 rna N/A N/A N/A 39922193
    937858 9gft:7 (3.1) BS01 rna N/A N/A N/A 39922193
    937859 9gft:8 (3.1) BS01 rna N/A N/A N/A 39922193
    937860 9gft:8 (3.1) BS02 rna N/A N/A N/A 39922193
    937861 9gft:9 (3.1) BS01 rna N/A N/A N/A 39922193
    937862 9gft:A1 (3.1) BS01 rna N/A N/A N/A 39922193
    937863 9gft:AB (3.1) BS01 rna N/A N/A N/A 39922193
    937864 9gft:AC (3.1) BS01 rna N/A N/A N/A 39922193
    937865 9gft:AC (3.1) BS02 rna N/A N/A N/A 39922193
    937866 9gft:AD (3.1) BS01 rna N/A N/A N/A 39922193
    937867 9gft:AE (3.1) BS01 rna N/A N/A N/A 39922193
    937868 9gft:AE (3.1) BS02 rna N/A N/A N/A 39922193
    937869 9gft:AF (3.1) BS01 rna N/A N/A N/A 39922193
    937870 9gft:AG (3.1) BS01 rna N/A N/A N/A 39922193
    937871 9gft:AH (3.1) BS01 rna N/A N/A N/A 39922193
    937872 9gft:AI (3.1) BS01 rna N/A N/A N/A 39922193
    937873 9gft:AJ (3.1) BS01 rna N/A N/A N/A 39922193
    937874 9gft:AK (3.1) BS01 rna N/A N/A N/A 39922193
    937875 9gft:AL (3.1) BS01 rna N/A N/A N/A 39922193
    937876 9gft:AM (3.1) BS01 rna N/A N/A N/A 39922193
    937877 9gft:AN (3.1) BS01 rna N/A N/A N/A 39922193
    937878 9gft:AN (3.1) BS02 rna N/A N/A N/A 39922193
    937879 9gft:AO (3.1) BS01 rna N/A N/A N/A 39922193
    937880 9gft:AP (3.1) BS01 rna N/A N/A N/A 39922193
    937881 9gft:AQ (3.1) BS01 rna N/A N/A N/A 39922193
    937882 9gft:AR (3.1) BS01 rna N/A N/A N/A 39922193
    937883 9gft:AS (3.1) BS01 rna N/A N/A N/A 39922193
    937884 9gft:AT (3.1) BS01 rna N/A N/A N/A 39922193
    937885 9gft:AT (3.1) BS02 rna N/A N/A N/A 39922193
    937886 9gft:AX (3.1) BS01 rna N/A N/A N/A 39922193
    937887 9gft:AY (3.1) BS01 rna N/A N/A N/A 39922193
    937888 9gft:AZ (3.1) BS01 rna N/A N/A N/A 39922193
    937889 9gft:Aa (3.1) BS01 rna N/A N/A N/A 39922193
    937890 9gft:Aa (3.1) BS02 rna N/A N/A N/A 39922193
    937891 9gft:Aa (3.1) BS03 rna N/A N/A N/A 39922193
    937892 9gft:Ab (3.1) BS01 rna N/A N/A N/A 39922193
    937893 9gft:Ac (3.1) BS01 rna N/A N/A N/A 39922193
    937894 9gft:Ad (3.1) BS01 rna N/A N/A N/A 39922193
    937895 9gft:Ae (3.1) BS01 rna N/A N/A N/A 39922193
    937896 9gft:Af (3.1) BS01 rna N/A N/A N/A 39922193
    937897 9gft:Af (3.1) BS02 rna N/A N/A N/A 39922193
    937898 9gft:Ag (3.1) BS01 rna N/A N/A N/A 39922193
    937899 9gft:Ah (3.1) BS01 rna N/A N/A N/A 39922193
    937900 9gft:Ai (3.1) BS01 rna N/A N/A N/A 39922193
    937901 9gft:Aj (3.1) BS01 rna N/A N/A N/A 39922193
    937902 9gft:Aj (3.1) BS02 rna N/A N/A N/A 39922193
    937903 9gft:Ak (3.1) BS01 rna N/A N/A N/A 39922193
    937904 9gft:Ak (3.1) BS02 rna N/A N/A N/A 39922193
    937905 9gft:Al (3.1) BS01 rna N/A N/A N/A 39922193
    937906 9gft:Am (3.1) BS01 rna N/A N/A N/A 39922193
    937907 9gft:An (3.1) BS01 rna N/A N/A N/A 39922193
    937908 9gft:Ao (3.1) BS01 rna N/A N/A N/A 39922193
    937909 9gft:Ap (3.1) BS01 rna N/A N/A N/A 39922193
    937910 9gft:Aq (3.1) BS01 rna N/A N/A N/A 39922193
    937911 9gft:Aq (3.1) BS02 rna N/A N/A N/A 39922193
    937912 9gft:Ar (3.1) BS01 rna N/A N/A N/A 39922193
    937913 9gft:Ar (3.1) BS02 rna N/A N/A N/A 39922193
    937914 9gft:As (3.1) BS01 rna N/A N/A N/A 39922193
    937915 9gft:At (3.1) BS01 rna N/A N/A N/A 39922193
    937916 9gft:Au (3.1) BS01 rna N/A N/A N/A 39922193
    937917 9gft:Av (3.1) BS01 rna N/A N/A N/A 39922193
    937918 9gft:Aw (3.1) BS01 rna N/A N/A N/A 39922193
    937919 9gft:Ax (3.1) BS01 rna N/A N/A N/A 39922193
    937920 9gft:Ay (3.1) BS01 rna N/A N/A N/A 39922193
    937921 9gft:Az (3.1) BS01 rna N/A N/A N/A 39922193
    937922 9gft:B (3.1) BS01 rna N/A N/A N/A 39922193
    937923 9gft:B (3.1) BS02 rna N/A N/A N/A 39922193
    937924 9gft:B (3.1) BS03 rna N/A N/A N/A 39922193
    937925 9gft:C (3.1) BS01 rna N/A N/A N/A 39922193
    937926 9gft:D (3.1) BS01 rna N/A N/A N/A 39922193
    937927 9gft:E (3.1) BS01 rna N/A N/A N/A 39922193
    937928 9gft:F (3.1) BS01 rna N/A N/A N/A 39922193
    937929 9gft:G (3.1) BS01 rna N/A N/A N/A 39922193
    937930 9gft:H (3.1) BS01 rna N/A N/A N/A 39922193
    937931 9gft:H (3.1) BS02 rna N/A N/A N/A 39922193
    937932 9gft:I (3.1) BS01 rna N/A N/A N/A 39922193
    937933 9gft:J (3.1) BS01 rna N/A N/A N/A 39922193
    937934 9gft:K (3.1) BS01 rna N/A N/A N/A 39922193
    937935 9gft:L (3.1) BS01 rna N/A N/A N/A 39922193
    937936 9gft:L (3.1) BS02 rna N/A N/A N/A 39922193
    937937 9gft:P (3.1) BS01 rna N/A N/A N/A 39922193
    937938 9gft:P (3.1) BS02 rna N/A N/A N/A 39922193
    937939 9gft:Q (3.1) BS01 rna N/A N/A N/A 39922193
    937940 9gft:R (3.1) BS01 rna N/A N/A N/A 39922193
    937941 9gft:S (3.1) BS01 rna N/A N/A N/A 39922193
    937942 9gft:S (3.1) BS02 rna N/A N/A N/A 39922193
    937943 9gft:S (3.1) BS03 rna N/A N/A N/A 39922193
    937944 9gft:T (3.1) BS01 rna N/A N/A N/A 39922193
    937945 9gft:U (3.1) BS01 rna N/A N/A N/A 39922193
    937946 9gft:U (3.1) BS02 rna N/A N/A N/A 39922193
    937947 9gft:V (3.1) BS01 rna N/A N/A N/A 39922193
    937948 9gft:W (3.1) BS01 rna N/A N/A N/A 39922193
    937949 9gft:X (3.1) BS01 rna N/A N/A N/A 39922193
    937950 9gft:X (3.1) BS02 rna N/A N/A N/A 39922193
    937951 9gft:Y (3.1) BS01 rna N/A N/A N/A 39922193
    937952 9gft:Z (3.1) BS01 rna N/A N/A N/A 39922193
    937953 9gft:Z (3.1) BS02 rna N/A N/A N/A 39922193
    937954 9gft:a (3.1) BS01 rna N/A N/A N/A 39922193
    937955 9gft:b (3.1) BS01 rna N/A N/A N/A 39922193
    937956 9gft:b (3.1) BS02 rna N/A N/A N/A 39922193
    937957 9gft:c (3.1) BS01 rna N/A N/A N/A 39922193
    937958 9gft:c (3.1) BS02 rna N/A N/A N/A 39922193
    937959 9gft:d (3.1) BS01 rna N/A N/A N/A 39922193
    937960 9gft:e (3.1) BS01 rna N/A N/A N/A 39922193
    937961 9gft:f (3.1) BS01 rna N/A N/A N/A 39922193
    937962 9gft:g (3.1) BS01 rna N/A N/A N/A 39922193
    937963 9gft:h (3.1) BS01 rna N/A N/A N/A 39922193
    937964 9gft:i (3.1) BS01 rna N/A N/A N/A 39922193
    937965 9gft:i (3.1) BS02 rna N/A N/A N/A 39922193
    937966 9gft:j (3.1) BS01 rna N/A N/A N/A 39922193
    937967 9gft:j (3.1) BS02 rna N/A N/A N/A 39922193
    937968 9gft:k (3.1) BS01 rna N/A N/A N/A 39922193
    937969 9gft:l (3.1) BS01 rna N/A N/A N/A 39922193
    937970 9gft:m (3.1) BS01 rna N/A N/A N/A 39922193
    937971 9gft:n (3.1) BS01 rna N/A N/A N/A 39922193
    937972 9gft:o (3.1) BS01 rna N/A N/A N/A 39922193
    937973 9gft:p (3.1) BS01 rna N/A N/A N/A 39922193
    937974 9gft:q (3.1) BS01 rna N/A N/A N/A 39922193
    937975 9gft:r (3.1) BS01 rna N/A N/A N/A 39922193
    937976 9gft:s (3.1) BS01 rna N/A N/A N/A 39922193
    937977 9gft:t (3.1) BS01 rna N/A N/A N/A 39922193
    937978 9gft:u (3.1) BS01 rna N/A N/A N/A 39922193
    937979 9gft:v (3.1) BS01 rna N/A N/A N/A 39922193
    937980 9gft:v (3.1) BS02 rna N/A N/A N/A 39922193
    937981 9gft:x (3.1) BS01 rna N/A N/A N/A 39922193
    937982 9gft:y (3.1) BS01 rna N/A N/A N/A 39922193
    937983 9gft:z (3.1) BS01 rna N/A N/A N/A 39922193
    937984 9gfv:A (1.14) BS01 ZN N/A GO:0002009 ... P00918 39454912
    937985 9gfv:A (1.14) BS02 A1IKU N/A GO:0002009 ... P00918 39454912
    937986 9gfw:A (1.07) BS01 ZN N/A GO:0002009 ... P00918 39454912
    937987 9gfw:A (1.07) BS02 A1IKU N/A GO:0002009 ... P00918 39454912
    937988 9gfx:A (1.35) BS01 ZN N/A GO:0002009 ... P00918 39454912
    937989 9gfx:A (1.35) BS02 A1IKR N/A GO:0002009 ... P00918 39454912
    937990 9gfz:A (2.5) BS01 ANP N/A N/A Q6UD73 N/A
    937991 9gg9:A (3.0) BS01 A1IKW N/A N/A P48736 39635891
    937992 9ggh:A (2.14) BS01 A1IKY N/A N/A F8W4B7 39602240
    937993 9ggh:A (2.14) BS02 ZN N/A N/A F8W4B7 39602240
    937994 9ggh:A (2.14) BS03 ZN N/A N/A F8W4B7 39602240
    937995 9ggh:A (2.14) BS04 ZN N/A N/A F8W4B7 39602240
    937996 9ggh:A (2.14) BS05 ZN N/A N/A F8W4B7 39602240
    937997 9ggj:A (2.0) BS01 AS1 N/A N/A Q9LEU8 39384000
    937998 9ggj:A (2.0) BS02 FUM N/A N/A Q9LEU8 39384000
    937999 9ggj:B (2.0) BS01 AS1 N/A N/A Q9LEU8 39384000
    938000 9ggj:B (2.0) BS02 FUM N/A N/A Q9LEU8 39384000

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).