SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    938401 9go1:A (2.59) BS01 RET N/A N/A Q8RUT8
    Q93WP2
    39680650
    938402 9go2:A (2.7) BS01 RET N/A N/A Q8RUT8
    Q93WP2
    39680650
    938403 9go5:A (2.5) BS01 ADP N/A N/A P60010 39798573
    938404 9go5:B (2.5) BS01 ADP N/A N/A P60010 39798573
    938405 9go5:C (2.5) BS01 ADP N/A N/A P60010 39798573
    938406 9go5:D (2.5) BS01 ADP N/A N/A P60010 39798573
    938407 9go5:E (2.5) BS01 ADP N/A N/A P60010 39798573
    938408 9gob:A (3.2) BS01 ADP N/A N/A N/A 39928047
    938409 9gob:B (3.2) BS01 ADP N/A N/A N/A 39928047
    938410 9gob:C (3.2) BS01 peptide N/A N/A N/A 39928047
    938411 9gob:C (3.2) BS02 ADP N/A N/A N/A 39928047
    938412 9gob:D (3.2) BS01 ADP N/A N/A N/A 39928047
    938413 9gob:E (3.2) BS01 ADP N/A N/A N/A 39928047
    938414 9gob:E (3.2) BS02 MG N/A N/A N/A 39928047
    938415 9gof:A (1.6) BS01 GLY N/A N/A P73510 39827241
    938416 9gof:B (1.6) BS01 GLY N/A N/A P73510 39827241
    938417 9gof:C (1.6) BS01 GLY N/A N/A P73510 39827241
    938418 9gog:AAA (1.24) BS01 VVB N/A GO:0003796 ... P00698 39642703
    938419 9gog:AAA (1.24) BS02 A1IOM N/A GO:0003796 ... P00698 39642703
    938420 9gog:AAA (1.24) BS03 A1IOM N/A GO:0003796 ... P00698 39642703
    938421 9gok:AAA (1.18) BS01 A1ION N/A GO:0003796 ... P00698 39642703
    938422 9gov:A (2.0) BS01 QBF N/A N/A N/A 39870290
    938423 9gov:A (2.0) BS02 FAD N/A N/A N/A 39870290
    938424 9gov:B (2.0) BS01 FAD N/A N/A N/A 39870290
    938425 9gov:B (2.0) BS02 QBF N/A N/A N/A 39870290
    938426 9goz:A (1.4) BS01 FAD N/A N/A N/A 39870290
    938427 9goz:A (1.4) BS02 EOL N/A N/A N/A 39870290
    938428 9goz:B (1.4) BS01 FAD N/A N/A N/A 39870290
    938429 9goz:B (1.4) BS02 EOL N/A N/A N/A 39870290
    938430 9gp0:A (1.75) BS01 FAD N/A N/A N/A 39870290
    938431 9gp0:A (1.75) BS02 V55 N/A N/A N/A 39870290
    938432 9gp0:B (1.75) BS01 FAD N/A N/A N/A 39870290
    938433 9gp0:B (1.75) BS02 V55 N/A N/A N/A 39870290
    938434 9gp1:A (2.21) BS01 ZN N/A N/A O75164 N/A
    938435 9gp1:B (2.21) BS01 ZN N/A N/A O75164 N/A
    938436 9gp1:C (2.21) BS01 ZN N/A N/A O75164 N/A
    938437 9gp1:D (2.21) BS01 ZN N/A N/A O75164 N/A
    938438 9gpb:A (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    938439 9gpb:B (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    938440 9gpb:C (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    938441 9gpb:D (2.9) BS01 PLP 2.4.1.1 GO:0000166 ... P00489 2770867
    938442 9gpj:A (1.53) BS01 dna N/A GO:0003676 ... P09651 N/A
    938443 9gpk:A (1.75) BS01 A1INK N/A N/A Q13451 39749563
    938444 9gpk:B (1.75) BS01 A1INK N/A N/A Q13451 39749563
    938445 9gpl:A (1.8) BS01 A1INL N/A N/A Q13451 39749563
    938446 9gpl:B (1.8) BS01 A1INL N/A N/A Q13451 39749563
    938447 9gpm:A (1.55) BS01 A1INM N/A N/A Q13451 39749563
    938448 9gpm:B (1.55) BS01 A1INM N/A N/A Q13451 39749563
    938449 9gpn:A (1.8) BS01 A1INN N/A N/A Q13451 39749563
    938450 9gpn:B (1.8) BS01 A1INN N/A N/A Q13451 39749563
    938451 9gpo:A (1.68) BS01 A1INU N/A N/A Q13451 39749563
    938452 9gpo:B (1.68) BS01 A1INU N/A N/A Q13451 39749563
    938453 9gpp:A (2.1) BS01 A1INO N/A N/A Q13451 39749563
    938454 9gpp:B (2.1) BS01 A1INO N/A N/A Q13451 39749563
    938455 9gpq:A (1.35) BS01 A1INQ N/A N/A Q13451 39749563
    938456 9gpq:B (1.35) BS01 A1INQ N/A N/A Q13451 39749563
    938457 9gpr:A (1.75) BS01 A1INP N/A N/A Q13451 39749563
    938458 9gpr:B (1.75) BS01 A1INP N/A N/A Q13451 39749563
    938459 9gps:A (1.9) BS01 A1INV N/A N/A Q13451 39749563
    938460 9gps:B (1.9) BS01 A1INV N/A N/A Q13451 39749563
    938461 9gpt:A (2.0) BS01 A1INR N/A N/A Q13451 39749563
    938462 9gpt:B (2.0) BS01 A1INR N/A N/A Q13451 39749563
    938463 9gpu:A (1.36) BS01 A1INS N/A N/A Q13451 39749563
    938464 9gpu:B (1.36) BS01 A1INS N/A N/A Q13451 39749563
    938465 9gpv:A (1.7) BS01 A1INT N/A N/A Q13451 39749563
    938466 9gpv:B (1.7) BS01 A1INT N/A N/A Q13451 39749563
    938467 9gpw:A (1.74) BS01 A1INW N/A N/A Q13451 39749563
    938468 9gpw:B (1.74) BS01 A1INW N/A N/A Q13451 39749563
    938469 9gpx:A (1.8) BS01 A1INX N/A N/A Q13451 39749563
    938470 9gpx:B (1.8) BS01 A1INX N/A N/A Q13451 39749563
    938471 9gpy:A (1.5) BS01 A1INZ N/A N/A Q13451 39749563
    938472 9gpy:B (1.5) BS01 A1INZ N/A N/A Q13451 39749563
    938473 9gpy:C (1.5) BS01 A1INZ N/A N/A Q13451 39749563
    938474 9gpz:A (1.8) BS01 A1INY N/A N/A Q13451 39749563
    938475 9gpz:B (1.8) BS01 A1INY N/A N/A Q13451 39749563
    938476 9gq2:A (2.301) BS01 A1IN0 N/A N/A Q13451 39752587
    938477 9gq2:B (2.301) BS01 A1IN0 N/A N/A Q13451 39752587
    938478 9gq3:A (2.3) BS01 A1IN1 N/A N/A Q13451 39752587
    938479 9gq3:B (2.3) BS01 A1IN1 N/A N/A Q13451 39752587
    938480 9gq4:A (1.8) BS01 A1IN2 N/A N/A Q13451 39752587
    938481 9gq4:B (1.8) BS01 A1IN2 N/A N/A Q13451 39752587
    938482 9gq5:A (1.93) BS01 A1IN3 N/A N/A Q13451 39752587
    938483 9gq5:B (1.93) BS01 A1IN3 N/A N/A Q13451 39752587
    938484 9gq6:A (1.88) BS01 A1IN4 N/A N/A Q13451 39752587
    938485 9gq6:B (1.88) BS01 A1IN4 N/A N/A Q13451 39752587
    938486 9gq7:A (2.3) BS01 A1IN5 N/A N/A Q13451 39752587
    938487 9gq7:B (2.3) BS01 A1IN5 N/A N/A Q13451 39752587
    938488 9gq8:A (2.16) BS01 A1IN6 N/A N/A Q13451 39752587
    938489 9gq8:B (2.16) BS01 A1IN6 N/A N/A Q13451 39752587
    938490 9gq9:A (2.0) BS01 A1IN3 N/A N/A Q13451 39752587
    938491 9gq9:B (2.0) BS01 A1IN3 N/A N/A Q13451 39752587
    938492 9gqa:A (1.93) BS01 A1IN7 N/A N/A Q13451 39752587
    938493 9gqa:B (1.93) BS01 A1IN7 N/A N/A Q13451 39752587
    938494 9gqb:A (2.0) BS01 A1IN8 N/A N/A Q13451 39752587
    938495 9gqb:B (2.0) BS01 A1IN8 N/A N/A Q13451 39752587
    938496 9gqc:A (2.5) BS01 A1IN9 N/A N/A Q13451 39752587
    938497 9gqc:B (2.5) BS01 A1IN9 N/A N/A Q13451 39752587
    938498 9gqd:A (2.5) BS01 A1IOA N/A N/A Q13451 39752587
    938499 9gqd:B (2.5) BS01 A1IOA N/A N/A Q13451 39752587
    938500 9gqe:A (2.5) BS01 A1IOB N/A N/A Q13451 39752587
    938501 9gqe:B (2.5) BS01 A1IOB N/A N/A Q13451 39752587
    938502 9gqf:A (1.8) BS01 A1IOC N/A N/A Q13451 39752587
    938503 9gqf:B (1.8) BS01 A1IOC N/A N/A Q13451 39752587
    938504 9gqg:A (2.0) BS01 A1IOG N/A N/A Q13451 39752587
    938505 9gqg:B (2.0) BS01 A1IOG N/A N/A Q13451 39752587
    938506 9gqh:A (2.6) BS01 A1IOH N/A N/A Q13451 39752587
    938507 9gqh:B (2.6) BS01 A1IOH N/A N/A Q13451 39752587
    938508 9gqi:A (1.5) BS01 A1IOF N/A N/A Q13451 39752587
    938509 9gqi:B (1.5) BS01 A1IOF N/A N/A Q13451 39752587
    938510 9gqj:A (1.65) BS01 A1IOD N/A N/A Q13451 39752587
    938511 9gqj:B (1.65) BS01 A1IOD N/A N/A Q13451 39752587
    938512 9gqk:A (1.7) BS01 A1IOE N/A N/A Q13451 39752587
    938513 9gqk:B (1.7) BS01 A1IOE N/A N/A Q13451 39752587
    938514 9gqo:A (3.46) BS01 CA N/A GO:0005388 ... Q8Y8Q5 N/A
    938515 9gqo:A (3.46) BS02 PO3 N/A GO:0005388 ... Q8Y8Q5 N/A
    938516 9gqo:A (3.46) BS03 MG N/A GO:0005388 ... Q8Y8Q5 N/A
    938517 9gr1:0 (3.17) BS01 rna N/A GO:0003735 ... P0A7N9 39607923
    938518 9gr1:1 (3.17) BS01 rna N/A GO:0005840 ... P0A7P5 39607923
    938519 9gr1:2 (3.17) BS01 rna N/A GO:0003735 ... P0A7Q1 39607923
    938520 9gr1:3 (3.17) BS01 rna N/A GO:0005737 ... P0A7Q6 39607923
    938521 9gr1:3 (3.17) BS02 ZN N/A GO:0005737 ... P0A7Q6 39607923
    938522 9gr1:B (3.17) BS01 rna N/A GO:0003735 ... P0A7V0 39607923
    938523 9gr1:C (3.17) BS01 rna N/A GO:0003729 ... P0A7V3 39607923
    938524 9gr1:D (3.17) BS01 rna N/A GO:0003735 ... P0A7V8 39607923
    938525 9gr1:E (3.17) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    938526 9gr1:E (3.17) BS02 rna N/A GO:0000028 ... P0A7W1 39607923
    938527 9gr1:F (3.17) BS01 rna N/A GO:0002181 ... P02358 39607923
    938528 9gr1:G (3.17) BS01 rna N/A GO:0000049 ... P02359 39607923
    938529 9gr1:G (3.17) BS02 rna N/A GO:0000049 ... P02359 39607923
    938530 9gr1:G (3.17) BS03 rna N/A GO:0000049 ... P02359 39607923
    938531 9gr1:H (3.17) BS01 rna N/A GO:0005840 ... P0A7W7 39607923
    938532 9gr1:I (3.17) BS01 rna N/A GO:0003723 ... P0A7X3 39607923
    938533 9gr1:I (3.17) BS02 rna N/A GO:0003723 ... P0A7X3 39607923
    938534 9gr1:J (3.17) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    938535 9gr1:K (3.17) BS01 rna N/A GO:0005840 ... P0A7R9 39607923
    938536 9gr1:L (3.17) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    938537 9gr1:M (3.17) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    938538 9gr1:N (3.17) BS01 rna N/A GO:0003735 ... P0AG59 39607923
    938539 9gr1:O (3.17) BS01 rna N/A GO:0005737 ... P0ADZ4 39607923
    938540 9gr1:O (3.17) BS02 rna N/A GO:0005737 ... P0ADZ4 39607923
    938541 9gr1:P (3.17) BS01 rna N/A GO:0003735 ... P0A7T3 39607923
    938542 9gr1:Q (3.17) BS01 rna N/A GO:0003735 ... P0AG63 39607923
    938543 9gr1:R (3.17) BS01 rna N/A GO:0003735 ... P0A7T7 39607923
    938544 9gr1:S (3.17) BS01 rna N/A GO:0000028 ... P0A7U3 39607923
    938545 9gr1:T (3.17) BS01 rna N/A GO:0005829 ... P0A7U7 39607923
    938546 9gr1:U (3.17) BS01 rna N/A GO:0005840 ... P68679 39607923
    938547 9gr1:c (3.17) BS01 rna N/A GO:0002181 ... P60422 39607923
    938548 9gr1:c (3.17) BS02 rna N/A GO:0002181 ... P60422 39607923
    938549 9gr1:d (3.17) BS01 rna N/A GO:0003735 ... P60438 39607923
    938550 9gr1:e (3.17) BS01 rna N/A GO:0003735 ... P60723 39607923
    938551 9gr1:f (3.17) BS01 rna N/A GO:0000049 ... P62399 39607923
    938552 9gr1:f (3.17) BS02 rna N/A GO:0000049 ... P62399 39607923
    938553 9gr1:f (3.17) BS03 rna N/A GO:0000049 ... P62399 39607923
    938554 9gr1:g (3.17) BS01 rna N/A GO:0002181 ... P0AG55 39607923
    938555 9gr1:h (3.17) BS01 rna N/A GO:0005840 ... P0A7R1 39607923
    938556 9gr1:i (3.17) BS01 rna N/A GO:0003729 ... P0AA10 39607923
    938557 9gr1:j (3.17) BS01 rna N/A GO:0003735 ... P0ADY3 39607923
    938558 9gr1:j (3.17) BS02 rna N/A GO:0003735 ... P0ADY3 39607923
    938559 9gr1:k (3.17) BS01 rna N/A GO:0003735 ... P02413 39607923
    938560 9gr1:l (3.17) BS01 rna N/A GO:0000049 ... P0ADY7 39607923
    938561 9gr1:l (3.17) BS02 rna N/A GO:0000049 ... P0ADY7 39607923
    938562 9gr1:m (3.17) BS01 rna N/A GO:0003735 ... P0AG44 39607923
    938563 9gr1:n (3.17) BS01 rna N/A GO:0005737 ... P0C018 39607923
    938564 9gr1:n (3.17) BS02 rna N/A GO:0005737 ... P0C018 39607923
    938565 9gr1:o (3.17) BS01 rna N/A GO:0003735 ... P0A7K6 39607923
    938566 9gr1:o (3.17) BS02 rna N/A GO:0003735 ... P0A7K6 39607923
    938567 9gr1:p (3.17) BS01 rna N/A GO:0000027 ... P0A7L3 39607923
    938568 9gr1:q (3.17) BS01 rna N/A GO:0003735 ... P0AG48 39607923
    938569 9gr1:r (3.17) BS01 rna N/A GO:0003735 ... P61175 39607923
    938570 9gr1:s (3.17) BS01 rna N/A GO:0005840 ... P0ADZ0 39607923
    938571 9gr1:t (3.17) BS01 rna N/A GO:0005829 ... P60624 39607923
    938572 9gr1:u (3.17) BS01 rna N/A GO:0003723 ... P68919 39607923
    938573 9gr1:v (3.17) BS01 rna N/A GO:0003735 ... P0A7L8 39607923
    938574 9gr1:v (3.17) BS02 rna N/A GO:0003735 ... P0A7L8 39607923
    938575 9gr1:w (3.17) BS01 rna N/A GO:0003735 ... P0A7M2 39607923
    938576 9gr1:x (3.17) BS01 rna N/A GO:0005840 ... P0A7M6 39607923
    938577 9gr1:y (3.17) BS01 rna N/A GO:0005840 ... P0AG51 39607923
    938578 9gr1:y (3.17) BS02 rna N/A GO:0005840 ... P0AG51 39607923
    938579 9gr1:z (3.17) BS01 rna N/A GO:0005840 ... P0A7N4 39607923
    938580 9gr6:A (0.93) BS01 SAH N/A N/A P0DPA9 N/A
    938581 9gr7:A (1.04) BS01 SFG N/A N/A P0DPA9 N/A
    938582 9grc:C (3.5) BS01 Z41 N/A N/A P0ADC3 39725716
    938583 9grc:E (3.5) BS01 peptide N/A N/A P75958 39725716
    938584 9grd:A (1.99) BS01 CO N/A GO:0000287 ... P24300 N/A
    938585 9grd:A (1.99) BS02 CO N/A GO:0000287 ... P24300 N/A
    938586 9grd:B (1.99) BS01 CO N/A GO:0000287 ... P24300 N/A
    938587 9grd:B (1.99) BS02 CO N/A GO:0000287 ... P24300 N/A
    938588 9grd:C (1.99) BS01 CO N/A GO:0000287 ... P24300 N/A
    938589 9grd:C (1.99) BS02 CO N/A GO:0000287 ... P24300 N/A
    938590 9grd:D (1.99) BS01 CO N/A GO:0000287 ... P24300 N/A
    938591 9grd:D (1.99) BS02 CO N/A GO:0000287 ... P24300 N/A
    938592 9gre:A (2.0) BS01 MG N/A GO:0000287 ... P24300 N/A
    938593 9gre:A (2.0) BS02 MG N/A GO:0000287 ... P24300 N/A
    938594 9gre:B (2.0) BS01 MG N/A GO:0000287 ... P24300 N/A
    938595 9gre:B (2.0) BS02 MG N/A GO:0000287 ... P24300 N/A
    938596 9gre:C (2.0) BS01 MG N/A GO:0000287 ... P24300 N/A
    938597 9gre:C (2.0) BS02 MG N/A GO:0000287 ... P24300 N/A
    938598 9gre:D (2.0) BS01 MG N/A GO:0000287 ... P24300 N/A
    938599 9gre:D (2.0) BS02 MG N/A GO:0000287 ... P24300 N/A
    938600 9grp:A (2.1) BS01 SAM N/A GO:0004483 ... P0DTD1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).